Query psy719
Match_columns 45
No_of_seqs 100 out of 342
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:27:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idb_B CAMP-dependent protein 98.1 4.1E-06 1.4E-10 44.5 3.5 42 4-45 29-70 (161)
2 3pna_A CAMP-dependent protein 98.0 8.3E-06 2.8E-10 43.1 4.6 42 4-45 29-70 (154)
3 3ocp_A PRKG1 protein; serine/t 98.0 8.2E-06 2.8E-10 42.2 4.3 41 5-45 15-55 (139)
4 1vp6_A CNBD, cyclic-nucleotide 97.8 4.2E-05 1.4E-09 39.2 4.4 37 9-45 7-43 (138)
5 2z69_A DNR protein; beta barre 97.8 2.9E-05 9.9E-10 40.3 3.8 40 6-45 5-44 (154)
6 4f8a_A Potassium voltage-gated 97.8 3.3E-05 1.1E-09 40.4 3.9 38 8-45 22-59 (160)
7 3gyd_A CNMP-BD protein, cyclic 97.7 2.8E-05 9.6E-10 42.5 3.5 40 6-45 32-71 (187)
8 2ptm_A Hyperpolarization-activ 97.7 3.6E-05 1.2E-09 42.1 3.8 38 8-45 66-103 (198)
9 3shr_A CGMP-dependent protein 97.6 8.1E-05 2.8E-09 42.7 4.5 41 5-45 31-71 (299)
10 3of1_A CAMP-dependent protein 97.6 6.9E-05 2.4E-09 41.4 3.9 37 9-45 3-39 (246)
11 2qcs_B CAMP-dependent protein 97.6 5.3E-05 1.8E-09 43.2 3.4 42 4-45 30-71 (291)
12 3of1_A CAMP-dependent protein 97.6 7E-05 2.4E-09 41.4 3.8 40 6-45 118-157 (246)
13 3mdp_A Cyclic nucleotide-bindi 97.6 2.4E-05 8.3E-10 40.1 1.6 34 12-45 5-38 (142)
14 3bpz_A Potassium/sodium hyperp 97.6 4.4E-05 1.5E-09 41.9 2.7 37 9-45 68-104 (202)
15 4din_B CAMP-dependent protein 97.6 6.7E-05 2.3E-09 45.3 3.6 42 4-45 239-280 (381)
16 4ava_A Lysine acetyltransferas 97.6 7.5E-05 2.6E-09 43.5 3.7 34 12-45 12-45 (333)
17 3dv8_A Transcriptional regulat 97.6 4.6E-05 1.6E-09 41.7 2.5 34 12-45 2-35 (220)
18 2d93_A RAP guanine nucleotide 97.5 7.6E-05 2.6E-09 38.4 3.0 38 8-45 11-49 (134)
19 2pqq_A Putative transcriptiona 97.5 5E-05 1.7E-09 39.1 2.2 34 12-45 4-37 (149)
20 3e97_A Transcriptional regulat 97.5 0.00011 3.8E-09 40.6 3.6 34 12-45 5-38 (231)
21 4din_B CAMP-dependent protein 97.5 0.00017 6E-09 43.4 4.5 41 5-45 122-162 (381)
22 1wgp_A Probable cyclic nucleot 97.4 3.3E-05 1.1E-09 39.6 0.8 33 13-45 6-38 (137)
23 3fx3_A Cyclic nucleotide-bindi 97.4 7.5E-05 2.6E-09 41.4 2.2 38 8-45 6-43 (237)
24 3tnp_B CAMP-dependent protein 97.4 0.00013 4.4E-09 44.6 3.4 42 4-45 136-177 (416)
25 3dkw_A DNR protein; CRP-FNR, H 97.4 0.00011 3.7E-09 40.4 2.8 36 10-45 6-41 (227)
26 3shr_A CGMP-dependent protein 97.4 0.00011 3.8E-09 42.1 2.7 41 5-45 149-189 (299)
27 3d0s_A Transcriptional regulat 97.3 8.8E-05 3E-09 40.9 1.7 35 11-45 4-38 (227)
28 4ev0_A Transcription regulator 97.3 0.00019 6.4E-09 39.2 2.8 31 15-45 1-31 (216)
29 3dn7_A Cyclic nucleotide bindi 97.2 0.00013 4.4E-09 39.4 1.4 36 10-45 4-39 (194)
30 1zyb_A Transcription regulator 97.1 0.00044 1.5E-08 38.5 3.1 37 9-45 14-52 (232)
31 1o7f_A CAMP-dependent RAP1 gua 97.1 0.0009 3.1E-08 40.5 4.5 40 6-45 35-74 (469)
32 3ukn_A Novel protein similar t 97.0 0.00063 2.1E-08 37.4 3.3 32 14-45 76-107 (212)
33 2qcs_B CAMP-dependent protein 97.0 0.0014 4.8E-08 37.2 4.8 40 6-45 150-189 (291)
34 3tnp_B CAMP-dependent protein 96.9 0.00018 6E-09 44.1 0.2 39 7-45 261-299 (416)
35 3iwz_A CAP-like, catabolite ac 96.8 0.00073 2.5E-08 37.1 2.3 35 11-45 9-43 (230)
36 2fmy_A COOA, carbon monoxide o 96.7 0.0002 7E-09 39.3 -0.3 33 13-45 4-36 (220)
37 1ft9_A Carbon monoxide oxidati 96.6 0.00015 5.1E-09 40.0 -1.3 32 14-45 1-32 (222)
38 1o7f_A CAMP-dependent RAP1 gua 96.6 0.0034 1.2E-07 38.0 4.5 37 9-45 333-370 (469)
39 4f7z_A RAP guanine nucleotide 96.2 0.0066 2.2E-07 40.4 4.5 38 8-45 37-74 (999)
40 4f7z_A RAP guanine nucleotide 96.2 0.0064 2.2E-07 40.5 4.2 40 6-45 330-370 (999)
41 3cf6_E RAP guanine nucleotide 95.8 0.012 4.3E-07 38.4 4.3 38 8-45 27-65 (694)
42 3beh_A MLL3241 protein; transm 95.8 0.0041 1.4E-07 36.9 1.7 34 12-45 227-260 (355)
43 2gau_A Transcriptional regulat 95.6 0.005 1.7E-07 33.8 1.7 29 17-45 14-42 (232)
44 3ryp_A Catabolite gene activat 93.5 0.039 1.3E-06 29.6 1.9 28 18-45 1-28 (210)
45 3e6c_C CPRK, cyclic nucleotide 90.0 0.15 5.1E-06 28.3 1.7 32 14-45 10-41 (250)
46 2oz6_A Virulence factor regula 83.3 0.82 2.8E-05 24.2 2.3 22 24-45 1-22 (207)
47 1o5l_A Transcriptional regulat 82.1 0.46 1.6E-05 25.7 0.9 29 17-45 3-31 (213)
48 3kcc_A Catabolite gene activat 79.4 0.93 3.2E-05 25.4 1.6 25 21-45 54-78 (260)
49 2bgc_A PRFA; bacterial infecti 59.0 5 0.00017 21.9 1.7 24 22-45 2-27 (238)
50 3khi_A Putative metal-dependen 57.2 11 0.00038 22.5 3.0 23 11-34 21-43 (267)
51 3cqv_A Nuclear receptor subfam 53.2 13 0.00044 20.2 2.7 24 9-32 34-57 (199)
52 2p1t_A Retinoic acid receptor 51.5 18 0.00063 20.0 3.2 25 8-32 54-78 (240)
53 3vi8_A Peroxisome proliferator 48.3 20 0.00067 20.8 3.1 25 8-32 89-113 (273)
54 2nxx_A Ultraspiracle (USP, NR2 48.2 24 0.00082 19.5 3.4 25 8-32 50-74 (235)
55 1xpc_A Estrogen receptor; nucl 47.7 20 0.00069 20.0 3.0 25 8-32 48-72 (248)
56 1osh_A BIle acid receptor; nuc 47.5 23 0.00079 19.5 3.2 25 8-32 55-79 (232)
57 1jyo_E Protein tyrosine phosph 46.5 2.5 8.7E-05 22.2 -0.8 16 12-27 16-31 (105)
58 2iz2_A FTZ-F1 alpha, nuclear h 46.1 29 0.00099 19.4 3.5 25 8-32 59-83 (243)
59 2nxx_E Ecdysone receptor (ECR, 46.0 18 0.00061 20.4 2.6 24 9-32 66-89 (248)
60 3k6p_A Steroid hormone recepto 45.6 25 0.00086 19.8 3.2 25 8-32 61-85 (248)
61 1fcy_A RAR-gamma-1, retinoic a 45.2 26 0.0009 19.4 3.2 24 9-32 58-81 (236)
62 3u9q_A Peroxisome proliferator 45.1 18 0.00063 20.8 2.6 23 10-32 88-110 (269)
63 3n00_A REV-ERBA-alpha; reverba 44.9 17 0.00058 20.6 2.4 24 9-32 79-102 (245)
64 1n83_A Nuclear receptor ROR-al 44.7 20 0.00069 20.6 2.7 24 9-32 79-102 (270)
65 3ltx_A Estrogen receptor; cons 44.6 27 0.00093 19.5 3.2 25 8-32 49-73 (243)
66 1pdu_A DHR38, nuclear hormone 44.1 20 0.00068 20.3 2.6 24 9-32 61-84 (244)
67 3cjw_A COUP transcription fact 43.8 25 0.00086 19.6 3.0 25 8-32 50-74 (244)
68 2e2r_A Estrogen-related recept 43.6 29 0.00098 19.4 3.2 25 8-32 61-85 (244)
69 3p0u_A Nuclear receptor subfam 43.5 24 0.00084 19.8 2.9 25 8-32 47-71 (249)
70 1l2j_A Estrogen receptor beta; 43.5 28 0.00096 19.9 3.2 25 8-32 72-96 (271)
71 3b0t_A Vitamin D3 receptor; nu 43.0 26 0.0009 19.6 3.0 24 9-32 70-93 (254)
72 3oll_A Estrogen receptor beta; 42.9 30 0.001 19.2 3.2 25 8-32 46-70 (240)
73 1xdk_B RAR-beta, retinoic acid 42.7 35 0.0012 19.8 3.6 24 9-32 85-108 (303)
74 3kmr_A Retinoic acid receptor 42.6 30 0.001 19.8 3.2 25 8-32 81-105 (266)
75 1yye_A ER-beta, estrogen recep 42.3 30 0.001 19.8 3.2 25 8-32 44-68 (268)
76 3f5c_B Nuclear receptor subfam 42.0 19 0.00066 20.7 2.4 26 7-32 59-84 (268)
77 3plz_A FTZ-F1 related protein; 41.9 28 0.00095 19.8 3.0 25 8-32 69-93 (257)
78 1okr_A MECI, methicillin resis 41.7 30 0.001 16.8 2.8 19 19-37 101-121 (123)
79 3l0l_A Nuclear receptor ROR-ga 41.4 21 0.00071 20.2 2.4 24 9-32 70-93 (248)
80 1ymt_A Steroidogenic factor 1; 41.4 29 0.001 19.4 3.0 25 8-32 58-82 (246)
81 1lbd_A RXR_LBD, retinoid X rec 41.2 29 0.00098 19.8 3.0 25 8-32 96-120 (282)
82 3ipq_A Oxysterols receptor LXR 40.9 21 0.00072 20.5 2.4 24 9-32 102-125 (283)
83 1t7r_A Androgen receptor; nucl 40.6 33 0.0011 19.5 3.2 25 8-32 62-86 (269)
84 2r40_D Ecdysone receptor, 20-h 40.5 30 0.001 19.7 3.0 25 8-32 81-105 (266)
85 2hc4_A Vitamin D receptor; alp 39.9 40 0.0014 19.7 3.6 24 9-32 116-139 (302)
86 2d0s_A Cytochrome C, cytochrom 39.7 20 0.00069 16.1 1.9 21 18-38 57-77 (79)
87 1hg4_A Ultraspiracle; nuclear 39.4 36 0.0012 19.3 3.2 25 8-32 60-84 (279)
88 1g2n_A Ultraspiracle protein; 39.0 33 0.0011 19.4 3.0 25 8-32 55-79 (264)
89 2q2k_A Hypothetical protein; p 38.8 14 0.00048 17.5 1.2 12 10-21 38-49 (70)
90 3bjd_A Putative 3-oxoacyl-(acy 38.8 5.2 0.00018 24.0 -0.4 23 17-39 9-31 (332)
91 2o4j_A Vitamin D3 receptor; nu 38.6 22 0.00074 20.6 2.2 24 9-32 73-96 (292)
92 1nq7_A Nuclear receptor ROR-be 38.3 17 0.0006 20.4 1.8 24 9-32 64-87 (244)
93 3bpj_A Eukaryotic translation 37.7 17 0.00057 17.8 1.4 28 11-38 36-65 (80)
94 1ovl_A Orphan nuclear receptor 37.6 29 0.00098 19.7 2.6 24 9-32 88-111 (271)
95 1pzl_A Hepatocyte nuclear fact 37.4 17 0.00058 19.9 1.6 25 9-33 55-79 (237)
96 1z5x_E Ecdysone receptor ligan 37.3 39 0.0013 19.9 3.2 24 9-32 130-153 (310)
97 3vhv_A Mineralocorticoid recep 37.3 40 0.0014 19.1 3.2 25 8-32 53-77 (260)
98 1sqn_A PR, progesterone recept 36.8 37 0.0013 19.2 3.0 25 8-32 54-78 (261)
99 2ocf_A Estrogen receptor; estr 36.4 37 0.0013 19.9 3.0 25 8-32 57-81 (298)
100 3mnp_A Glucocorticoid receptor 36.4 42 0.0015 19.1 3.2 24 9-32 56-79 (261)
101 3gyt_A Nuclear hormone recepto 36.1 32 0.0011 19.7 2.7 24 9-32 55-78 (244)
102 3vhu_A Mineralocorticoid recep 35.8 51 0.0017 19.3 3.5 25 8-32 87-111 (294)
103 3v3e_B Nuclear receptor subfam 34.9 33 0.0011 19.5 2.6 24 9-32 66-89 (257)
104 1vk5_A Expressed protein; stru 34.0 29 0.001 19.2 2.1 20 4-23 38-57 (157)
105 3ilz_A Thyroid hormone recepto 32.6 24 0.00083 20.1 1.8 24 9-32 84-107 (267)
106 1a56_A C-551, ferricytochrome 32.4 27 0.00093 15.7 1.7 20 18-37 59-78 (81)
107 1xvp_B Orphan nuclear receptor 32.0 26 0.00089 19.5 1.8 25 8-32 67-91 (246)
108 4hbl_A Transcriptional regulat 32.0 52 0.0018 16.4 4.2 30 7-37 108-137 (149)
109 3ry0_A Putative tautomerase; o 32.0 24 0.00082 15.7 1.4 22 17-38 4-25 (65)
110 3up3_A Acedaf-12; ligand bindi 31.8 23 0.00078 20.1 1.6 24 9-32 55-78 (243)
111 1f9f_A Regulatory protein E2; 31.0 24 0.00082 17.5 1.4 16 9-24 59-74 (83)
112 2wjn_C Photosynthetic reaction 30.7 26 0.0009 21.7 1.7 23 15-37 56-78 (336)
113 2exv_A Cytochrome C-551; alpha 30.4 34 0.0012 15.2 1.8 20 18-38 61-80 (82)
114 3dzy_A Retinoic acid receptor 30.4 40 0.0014 21.1 2.6 24 10-33 283-306 (467)
115 1p3q_Q VPS9P, vacuolar protein 30.1 46 0.0016 15.2 2.4 28 7-34 8-36 (54)
116 3dzy_D Peroxisome proliferator 29.8 51 0.0017 20.2 2.9 22 11-32 238-259 (419)
117 3nyt_A Aminotransferase WBPE; 29.8 28 0.00097 19.9 1.7 22 17-38 338-359 (367)
118 3ju7_A Putative PLP-dependent 29.6 29 0.00099 20.4 1.8 23 17-39 349-371 (377)
119 2q79_A Regulatory protein E2; 29.6 26 0.0009 17.8 1.4 16 9-24 57-72 (93)
120 1a7g_E E2 DBD, regulatory prot 29.4 27 0.00092 17.2 1.4 16 9-24 58-73 (82)
121 3b8x_A WBDK, pyridoxamine 5-ph 29.4 28 0.00097 20.0 1.7 21 17-37 370-390 (390)
122 2bop_A Protein (E2); protein-D 29.3 28 0.00096 17.3 1.5 16 9-24 59-74 (85)
123 1nrl_A Orphan nuclear receptor 28.9 37 0.0013 20.1 2.2 24 9-32 134-157 (316)
124 1c75_A Cytochrome C-553; heme, 28.4 45 0.0015 14.6 3.1 19 18-37 50-68 (71)
125 1r8h_A Regulatory protein E2; 27.9 30 0.001 17.3 1.4 16 9-24 60-75 (87)
126 1eys_C Photosynthetic reaction 27.8 31 0.0011 21.8 1.7 23 15-37 54-76 (382)
127 1cch_A Cytochrome C551; electr 27.7 45 0.0015 14.8 2.0 19 18-37 61-79 (82)
128 1mz4_A Cytochrome C550; PSII a 27.5 64 0.0022 16.1 3.5 21 18-38 101-121 (137)
129 1ayg_A Cytochrome C-552; elect 27.1 42 0.0014 15.0 1.8 19 18-37 59-77 (80)
130 1m3w_A H10H24; four-helix bund 27.0 4.1 0.00014 16.8 -1.6 23 9-31 8-30 (32)
131 1e29_A Cytochrome C549; electr 26.7 47 0.0016 16.9 2.1 19 19-37 102-120 (135)
132 2l09_A ASR4154 protein; proto- 26.7 25 0.00087 16.6 1.0 11 11-21 9-19 (62)
133 1yj7_A ESCJ; mixed alpha/beta, 25.0 17 0.00059 20.0 0.2 23 17-39 2-24 (171)
134 3tx7_B Nuclear receptor subfam 24.3 40 0.0014 20.3 1.8 25 8-32 164-188 (352)
135 3la7_A Global nitrogen regulat 24.1 27 0.00091 19.0 0.9 20 26-45 30-52 (243)
136 3ph2_B Cytochrome C6; photosyn 23.6 57 0.0019 14.4 1.9 21 17-37 58-79 (86)
137 2a1j_A DNA repair endonuclease 23.1 41 0.0014 15.3 1.3 29 4-32 13-41 (63)
138 1p32_A Mitochondrial matrix pr 22.7 29 0.001 19.4 0.9 17 5-21 189-205 (209)
139 1h32_B Cytochrome C, SOXX; ele 22.6 55 0.0019 16.4 1.9 17 22-38 119-135 (138)
140 2xrh_A Protein HP0721; unknown 22.5 29 0.001 18.0 0.8 22 20-41 10-31 (100)
141 1ucr_A Protein DSVD; dissimila 22.4 81 0.0028 15.6 2.4 18 20-37 30-47 (78)
142 3rzi_A Probable 3-deoxy-D-arab 22.1 60 0.002 21.0 2.3 30 11-40 292-327 (462)
143 2kru_A Light-independent proto 22.1 25 0.00084 16.7 0.4 10 12-21 11-20 (63)
144 3frk_A QDTB; aminotransferase, 22.0 45 0.0015 19.0 1.6 23 17-39 342-364 (373)
145 2yu0_A Interferon-activable pr 21.9 20 0.00067 18.3 0.0 18 23-40 39-56 (94)
146 3mop_K IRAK-2, interleukin-1 r 21.9 42 0.0014 17.4 1.3 18 21-38 4-21 (111)
147 2zxy_A Cytochrome C552, cytoch 21.7 57 0.002 14.4 1.7 16 22-37 69-84 (87)
148 1dbd_A Regulatory protein E2; 21.5 43 0.0015 17.1 1.3 17 9-25 74-90 (100)
149 1zav_U 50S ribosomal protein L 21.4 15 0.00053 14.9 -0.3 19 21-39 10-28 (30)
150 1f1c_A Cytochrome C549; dimeri 21.4 73 0.0025 15.4 2.2 21 18-38 99-119 (129)
151 2x4k_A 4-oxalocrotonate tautom 21.3 50 0.0017 13.9 1.4 20 18-37 8-27 (63)
152 1wve_C 4-cresol dehydrogenase 21.2 68 0.0023 14.4 1.9 22 17-38 49-72 (80)
153 3qwl_A TBC1 domain family memb 21.2 45 0.0015 19.6 1.5 21 5-25 80-100 (294)
154 3dr0_A Cytochrome C6; photosyn 21.1 59 0.002 14.5 1.7 20 18-37 65-85 (93)
155 2kke_A Uncharacterized protein 21.1 71 0.0024 14.3 1.9 29 10-38 24-52 (53)
156 2ld7_B Paired amphipathic heli 20.9 49 0.0017 15.8 1.4 31 5-35 22-54 (75)
157 1dd4_C 50S ribosomal protein L 20.8 35 0.0012 14.6 0.8 20 20-39 9-28 (40)
158 1otf_A 4-oxalocrotonate tautom 20.6 52 0.0018 14.0 1.4 21 18-38 5-25 (62)
159 3mlc_A FG41 malonate semialdeh 20.3 39 0.0013 17.6 1.0 22 17-38 4-25 (136)
160 1pu1_A Hypothetical protein MT 20.0 69 0.0024 16.4 1.9 17 21-37 6-22 (94)
No 1
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=98.06 E-value=4.1e-06 Score=44.46 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
+..+++.+.++|+++|+|++|++.++..|+..++...|.+|+
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~ 70 (161)
T 3idb_B 29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGE 70 (161)
T ss_dssp CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTC
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCC
Confidence 456677889999999999999999999999999999999986
No 2
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=98.05 E-value=8.3e-06 Score=43.05 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
....++.+..+|+++|+|..|++.++..|+..++...|.+|+
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 70 (154)
T 3pna_A 29 DYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGE 70 (154)
T ss_dssp CHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred CHHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCC
Confidence 445677889999999999999999999999999999999986
No 3
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=98.03 E-value=8.2e-06 Score=42.24 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...++.+..+|+++|+|++|++.++..|+..++...|.+|+
T Consensus 15 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 55 (139)
T 3ocp_A 15 PQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDS 55 (139)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCC
Confidence 45667789999999999999999999999999999999986
No 4
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=97.79 E-value=4.2e-05 Score=39.21 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=34.3
Q ss_pred HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
....++|+++|+|..|++.++..++..++...|.+|+
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 43 (138)
T 1vp6_A 7 VRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 43 (138)
T ss_dssp HHHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCC
Confidence 4467899999999999999999999999999999986
No 5
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=97.79 E-value=2.9e-05 Score=40.29 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.......++|+++|+|..|++.++..++..+....|.+|+
T Consensus 5 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 44 (154)
T 2z69_A 5 EFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGA 44 (154)
T ss_dssp HHHHHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTC
T ss_pred CCChhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCC
Confidence 3445678899999999999999999999999999999986
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=97.77 E-value=3.3e-05 Score=40.38 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...+..+|+++|+|++|++.++..++..++...|.+|+
T Consensus 22 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 59 (160)
T 4f8a_A 22 VHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGD 59 (160)
T ss_dssp HHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTC
T ss_pred HHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCC
Confidence 34567899999999999999999999999999999986
No 7
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=97.75 E-value=2.8e-05 Score=42.51 Aligned_cols=40 Identities=5% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...+.+.++|+++|+|++|++.++..++..+....|.+|+
T Consensus 32 ~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge 71 (187)
T 3gyd_A 32 KYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDC 71 (187)
T ss_dssp GGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTC
T ss_pred HHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCC
Confidence 3456789999999999999999999999999999999986
No 8
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=97.73 E-value=3.6e-05 Score=42.06 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...+..+|+++|+|+++++..+..|+..+++..|.+|+
T Consensus 66 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge 103 (198)
T 2ptm_A 66 NYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPAD 103 (198)
T ss_dssp HHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCC
Confidence 34567899999999999999999999999999999986
No 9
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=97.64 E-value=8.1e-05 Score=42.72 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...++...++|+++|+|++|++.++..|++++....|.+|+
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 71 (299)
T 3shr_A 31 ERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDS 71 (299)
T ss_dssp HHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCC
Confidence 35567789999999999999999999999999999999986
No 10
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=97.62 E-value=6.9e-05 Score=41.44 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
+...++|+++|+|++|++.++..++.+++...|.+|+
T Consensus 3 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 39 (246)
T 3of1_A 3 QRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGA 39 (246)
T ss_dssp HHHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTC
T ss_pred HHHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCC
Confidence 3467899999999999999999999999999999986
No 11
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=97.62 E-value=5.3e-05 Score=43.18 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
+.+.++...++|+++|+|+.|++.++..|+..+....|.+|+
T Consensus 30 s~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 71 (291)
T 2qcs_B 30 DYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGE 71 (291)
T ss_dssp CHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTC
T ss_pred CHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCC
Confidence 456677899999999999999999999999999999999986
No 12
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=97.60 E-value=7e-05 Score=41.42 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.++..+..+++++|+|+++++.++.+++++++...|.+|+
T Consensus 118 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~ 157 (246)
T 3of1_A 118 KKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGE 157 (246)
T ss_dssp HHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTC
T ss_pred HHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCC
Confidence 4567788999999999999999999999999999999986
No 13
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=97.59 E-value=2.4e-05 Score=40.10 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=32.0
Q ss_pred HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.++|+++|+|++|++.++..++..++...|.+|+
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 38 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGS 38 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTC
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCC
Confidence 4689999999999999999999999999999986
No 14
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=97.58 E-value=4.4e-05 Score=41.92 Aligned_cols=37 Identities=3% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
..+..+|+++|+|+++++..+..|+..+++..|.+|+
T Consensus 68 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge 104 (202)
T 3bpz_A 68 FNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGD 104 (202)
T ss_dssp HHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCC
Confidence 5567899999999999999999999999999999986
No 15
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=97.57 E-value=6.7e-05 Score=45.26 Aligned_cols=42 Identities=48% Similarity=0.581 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...++..+..|++++|+|.+|+++++.+|++++....|.+|+
T Consensus 239 ~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge 280 (381)
T 4din_B 239 TLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280 (381)
T ss_dssp HHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSC
T ss_pred hHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCC
Confidence 345677889999999999999999999999999999999986
No 16
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=97.57 E-value=7.5e-05 Score=43.51 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.++|+++|+|++|++.++..|+.+++...|++|+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 45 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQ 45 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCC
Confidence 5799999999999999999999999999999986
No 17
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=97.55 E-value=4.6e-05 Score=41.72 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.+||+++|+|.+|++.++..++..++...|.+|+
T Consensus 2 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 35 (220)
T 3dv8_A 2 MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGT 35 (220)
T ss_dssp ---CCSCGGGGTSCHHHHHHHHTTCEEEEECTTC
T ss_pred cchHHhChhhhcCCHHHHHHHHhhCceEEeCCCC
Confidence 3689999999999999999999999999999996
No 18
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=97.53 E-value=7.6e-05 Score=38.37 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeec-CCC
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVE-KGE 45 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~-~Ge 45 (45)
.+....+|+++|+|..|++.++..|+..+....|. +|+
T Consensus 11 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~ 49 (134)
T 2d93_A 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGA 49 (134)
T ss_dssp HHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSC
T ss_pred HHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCC
Confidence 44678899999999999999999999999999999 886
No 19
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=97.50 E-value=5e-05 Score=39.06 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.++|+++|+|.+|++.++..++..++...|.+|+
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 37 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGD 37 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCC
Confidence 5689999999999999999999999999999986
No 20
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=97.49 E-value=0.00011 Score=40.61 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=32.3
Q ss_pred HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.++|+++|+|.+|++.++..++..++...|.+|+
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 38 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDE 38 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTC
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCC
Confidence 5799999999999999999999999999999986
No 21
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=97.47 E-value=0.00017 Score=43.45 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...++...++|+++|+|++|++.++..|++++....|.+|+
T Consensus 122 ~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge 162 (381)
T 4din_B 122 YKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGE 162 (381)
T ss_dssp HHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTC
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCC
Confidence 34566788999999999999999999999999999999986
No 22
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=97.42 E-value=3.3e-05 Score=39.63 Aligned_cols=33 Identities=6% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 13 EFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 13 ~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
++|+++|+|..|++.++..|+..+....|.+|+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 38 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKS 38 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTE
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCC
Confidence 579999999999999999999999999999985
No 23
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=97.41 E-value=7.5e-05 Score=41.45 Aligned_cols=38 Identities=5% Similarity=0.128 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
+....++|+++|+|..|++.++..++..++...|.+|+
T Consensus 6 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 43 (237)
T 3fx3_A 6 HEAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGE 43 (237)
T ss_dssp CHHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTC
T ss_pred hHHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCC
Confidence 34578999999999999999999999999999999986
No 24
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=97.41 E-value=0.00013 Score=44.64 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
+...++...++|+++|+|++|++.++..|++++....|.+|+
T Consensus 136 s~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge 177 (416)
T 3tnp_B 136 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGE 177 (416)
T ss_dssp CHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTC
T ss_pred CHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCC
Confidence 446677889999999999999999999999999999999986
No 25
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=97.40 E-value=0.00011 Score=40.38 Aligned_cols=36 Identities=8% Similarity=0.163 Sum_probs=33.4
Q ss_pred HHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 10 LYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 10 ~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...++|+++|+|++|++.++..++..++...|.+|+
T Consensus 6 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 41 (227)
T 3dkw_A 6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGA 41 (227)
T ss_dssp SSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTE
T ss_pred hHHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCC
Confidence 356899999999999999999999999999999985
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=97.38 E-value=0.00011 Score=42.13 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
..++..+..+|+++|+|..|++.++..++..++...|.+|+
T Consensus 149 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~ 189 (299)
T 3shr_A 149 LIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGE 189 (299)
T ss_dssp HHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTC
T ss_pred HHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCC
Confidence 45677899999999999999999999999999999999986
No 27
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=97.31 E-value=8.8e-05 Score=40.92 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=32.7
Q ss_pred HHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 11 YEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 11 ~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
..++|+++|+|..|++.++..++..+....|.+|+
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 38 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGH 38 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCC
Confidence 45789999999999999999999999999999986
No 28
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=97.28 E-value=0.00019 Score=39.16 Aligned_cols=31 Identities=3% Similarity=0.153 Sum_probs=27.2
Q ss_pred hhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 15 LSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 15 L~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
|+++|+|++|++.++..++..++...|.+|+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 31 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGK 31 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTC
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCC
Confidence 6789999999999999999999999999986
No 29
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=97.17 E-value=0.00013 Score=39.39 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=33.4
Q ss_pred HHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 10 LYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 10 ~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
++..+++.+|.|.+|++.++..++..++...|++|+
T Consensus 4 m~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 39 (194)
T 3dn7_A 4 MHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKE 39 (194)
T ss_dssp CCHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCC
Confidence 356799999999999999999999999999999996
No 30
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=97.09 E-value=0.00044 Score=38.50 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=33.6
Q ss_pred HHHHHHhhcCcccCCCChHHHhhHhhh--hheeeecCCC
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIVAKH--VTCAMVEKGE 45 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~kiad~--l~~~~y~~Ge 45 (45)
.....+|+++|+|..|++.++..++.. .....|.+|+
T Consensus 14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge 52 (232)
T 1zyb_A 14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGE 52 (232)
T ss_dssp HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTC
T ss_pred HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCC
Confidence 345778999999999999999999998 9999999986
No 31
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=97.07 E-value=0.0009 Score=40.54 Aligned_cols=40 Identities=13% Similarity=0.030 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...+...++|+++|+|++|++.++..|+..+....|.+|+
T Consensus 35 ~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 74 (469)
T 1o7f_A 35 EDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGI 74 (469)
T ss_dssp HHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCC
Confidence 4456688999999999999999999999999999999986
No 32
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=97.03 E-value=0.00063 Score=37.40 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=29.4
Q ss_pred HhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 14 FLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 14 fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.|.++|+|+++++..+..|+..+++..|.+|+
T Consensus 76 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge 107 (212)
T 3ukn_A 76 ELLQLPLFESASRGCLRSLSLIIKTSFCAPGE 107 (212)
T ss_dssp GGGGSGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHhcHHhhcCCHHHHHHHHHHhheEEeCCCC
Confidence 34589999999999999999999999999996
No 33
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=97.01 E-value=0.0014 Score=37.23 Aligned_cols=40 Identities=45% Similarity=0.557 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
..+..+..+++++++|..++..++..++++++...|.+|+
T Consensus 150 ~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~ 189 (291)
T 2qcs_B 150 RKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQ 189 (291)
T ss_dssp HHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCC
Confidence 3456678999999999999999999999999999999986
No 34
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=96.88 E-value=0.00018 Score=44.06 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 7 KRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 7 kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
++..+..||+++|+|.+|++.++.+|++++....|.+|+
T Consensus 261 ~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge 299 (416)
T 3tnp_B 261 KRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGE 299 (416)
T ss_dssp HSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCC
Confidence 344567799999999999999999999999999999986
No 35
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=96.78 E-value=0.00073 Score=37.07 Aligned_cols=35 Identities=3% Similarity=-0.081 Sum_probs=21.2
Q ss_pred HHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 11 YEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 11 ~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...+|+++|+|..|++.++..++...+...|++|+
T Consensus 9 ~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~ 43 (230)
T 3iwz_A 9 VTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRT 43 (230)
T ss_dssp -------------CCHHHHHHHHTTSEEEEECTTC
T ss_pred ehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCC
Confidence 46789999999999999999999999999999986
No 36
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=96.72 E-value=0.0002 Score=39.34 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=31.2
Q ss_pred HHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 13 EFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 13 ~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.||+++|+|..|++.++..++..+....|.+|+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 36 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKA 36 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTC
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCC
Confidence 579999999999999999999999999999986
No 37
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=96.63 E-value=0.00015 Score=40.05 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=29.8
Q ss_pred HhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 14 FLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 14 fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
||+++|+|..|++.++..++.......|.+|+
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 32 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGS 32 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTC
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCC
Confidence 68999999999999999999999999999986
No 38
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=96.60 E-value=0.0034 Score=37.98 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=32.7
Q ss_pred HHHHHHhhcCcccCCCChHHHhhHhhhhhe-eeecCCC
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTC-AMVEKGE 45 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~-~~y~~Ge 45 (45)
+...++|+++|+|..|++.++..+++++.. .+|.+|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~ 370 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT 370 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCC
Confidence 456789999999999999999999999985 4898886
No 39
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=96.25 E-value=0.0066 Score=40.41 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.+.....|++|++|++|++.++..||.++..+.|++|+
T Consensus 37 l~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge 74 (999)
T 4f7z_A 37 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGI 74 (999)
T ss_dssp HHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCC
Confidence 34567789999999999999999999999999999996
No 40
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=96.19 E-value=0.0064 Score=40.47 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCcccCCCChHHHhhHhhhhhee-eecCCC
Q psy719 6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCA-MVEKGE 45 (45)
Q Consensus 6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~-~y~~Ge 45 (45)
...+...+||.++|+|++|+..++..+|+++... +|++|+
T Consensus 330 ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGt 370 (999)
T 4f7z_A 330 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT 370 (999)
T ss_dssp HHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTC
T ss_pred HHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCC
Confidence 4456788999999999999999999999999854 456664
No 41
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=95.83 E-value=0.012 Score=38.42 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhHhhhhh-eeeecCCC
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVT-CAMVEKGE 45 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~-~~~y~~Ge 45 (45)
.+...++|+++|+|..|++.++..|+.++. ...|.+|+
T Consensus 27 ~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe 65 (694)
T 3cf6_E 27 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT 65 (694)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTC
T ss_pred HHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCC
Confidence 445788999999999999999999999998 78999986
No 42
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=95.75 E-value=0.0041 Score=36.94 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=1.0
Q ss_pred HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
.++++++|+|+++++.++..++..++...|.+||
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp HC--------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 4589999999999999999999999999999986
No 43
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=95.62 E-value=0.005 Score=33.85 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=27.6
Q ss_pred cCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 17 RVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
++|+|..|++.++..++.......|.+|+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~ 42 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKAS 42 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCC
Confidence 68999999999999999999999999986
No 44
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=93.52 E-value=0.039 Score=29.62 Aligned_cols=28 Identities=4% Similarity=-0.083 Sum_probs=21.2
Q ss_pred CcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 18 VSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
+++.+.|++.++..++..++...|.+|+
T Consensus 1 ~~l~~~l~~~~l~~l~~~~~~~~~~~g~ 28 (210)
T 3ryp_A 1 MVLGKPQTDPTLEWFLSHCHIHKYPSKS 28 (210)
T ss_dssp ------CCCHHHHHHHTTSEEEEECTTC
T ss_pred CcCCCcCCHHHHHHHHHhcEEEEeCCCC
Confidence 3677889999999999999999999986
No 45
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=90.04 E-value=0.15 Score=28.31 Aligned_cols=32 Identities=13% Similarity=-0.050 Sum_probs=26.8
Q ss_pred HhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 14 FLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 14 fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
|+.++.-+..|++.++..++.......|.+|+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~ 41 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGS 41 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTC
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCC
Confidence 44444445899999999999999999999986
No 46
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=83.34 E-value=0.82 Score=24.22 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=20.3
Q ss_pred CChHHHhhHhhhhheeeecCCC
Q psy719 24 CGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 24 L~~~~l~kiad~l~~~~y~~Ge 45 (45)
|++.++..++..+....|.+|+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~ 22 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKS 22 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTC
T ss_pred CCHHHHHHHHhhcceEEECCCC
Confidence 6889999999999999999986
No 47
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=82.09 E-value=0.46 Score=25.71 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=18.2
Q ss_pred cCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719 17 RVSILVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
+=|++.+.++.+...++.......|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 31 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGE 31 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTC
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCC
Confidence 45889999999999999999999999996
No 48
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=79.45 E-value=0.93 Score=25.37 Aligned_cols=25 Identities=4% Similarity=-0.138 Sum_probs=19.2
Q ss_pred cCCCChHHHhhHhhhhheeeecCCC
Q psy719 21 LVQCGSKKMGIVAKHVTCAMVEKGE 45 (45)
Q Consensus 21 lk~L~~~~l~kiad~l~~~~y~~Ge 45 (45)
...|++.++..++..++...|.+|+
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge 78 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKS 78 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTC
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCC
Confidence 3568999999999999999999986
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=59.01 E-value=5 Score=21.86 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=18.6
Q ss_pred CCCChHHHhhHhh--hhheeeecCCC
Q psy719 22 VQCGSKKMGIVAK--HVTCAMVEKGE 45 (45)
Q Consensus 22 k~L~~~~l~kiad--~l~~~~y~~Ge 45 (45)
++|++.++..+.. ......|.+|+
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge 27 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKE 27 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTC
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCC
Confidence 4688999999885 48889999886
No 50
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Probab=57.24 E-value=11 Score=22.48 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.3
Q ss_pred HHHHhhcCcccCCCChHHHhhHhh
Q psy719 11 YEEFLSRVSILVQCGSKKMGIVAK 34 (45)
Q Consensus 11 ~~~fL~~V~ilk~L~~~~l~kiad 34 (45)
....| .+|+++.|++.++.++-.
T Consensus 21 W~~~l-~~p~y~~L~~~e~~~L~~ 43 (267)
T 3khi_A 21 WEQAL-AIPVLAHLSSTEQHKLTQ 43 (267)
T ss_dssp HHHHH-CSGGGTTCCHHHHHHHHH
T ss_pred HHHHh-cCHHHhcCCHHHHHHHHH
Confidence 46778 999999999999888744
No 51
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=53.18 E-value=13 Score=20.18 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=19.8
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+...+
T Consensus 34 ~~~V~waK~lp~F~~L~~~DQ~~L 57 (199)
T 3cqv_A 34 KEVVEFAKRIPGFRDLSQHDQVNL 57 (199)
T ss_dssp HHHHHHHHTSGGGGGSCHHHHHHH
T ss_pred HHHHHHHhcCCChhhCCHHHHHHH
Confidence 456899999999999998776554
No 52
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=51.45 E-value=18 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|..|+..+...+
T Consensus 54 l~~~vewak~ip~F~~L~~~DQ~~L 78 (240)
T 2p1t_A 54 LFTLVEWAKRIPHFSELPLDDQVIL 78 (240)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCcChhcCCHHHHHHH
Confidence 3446899999999999998776554
No 53
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=48.26 E-value=20 Score=20.76 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-+...+|-|++|-|.+|+..+-..+
T Consensus 89 v~~iVewAK~iPgF~~L~~~DQi~L 113 (273)
T 3vi8_A 89 VTELTEFAKAIPGFANLDLNDQVTL 113 (273)
T ss_dssp HHHHHHHGGGSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHccCcCcccCCHHHHHHH
Confidence 3457899999999999998775555
No 54
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=48.18 E-value=24 Score=19.53 Aligned_cols=25 Identities=4% Similarity=-0.160 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|..|+..+...+
T Consensus 50 l~~~vewaK~ip~F~~L~~~DQ~~L 74 (235)
T 2nxx_A 50 LFQLVQWAKLVPHFTSLPLTDQVQL 74 (235)
T ss_dssp HHHHHHHHHHSTTSTTSCHHHHHHH
T ss_pred HHHHHHHHHcCCChhhCCHHHHHHH
Confidence 3456899999999999998776554
No 55
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=47.73 E-value=20 Score=20.04 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 48 l~~~VewaK~lp~F~~L~~~DQ~~L 72 (248)
T 1xpc_A 48 LVHMINWAKRVPGFVDLTLHDQVHL 72 (248)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCccccCCHHHHHHH
Confidence 3456899999999999998776554
No 56
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=47.54 E-value=23 Score=19.51 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 55 l~~~vewaK~lp~F~~L~~~DQ~~L 79 (232)
T 1osh_A 55 VQVLVEFTKKLPGFQTLDHEDQIAL 79 (232)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHhcCCchhhCCHHHHHHH
Confidence 3456899999999999998776554
No 57
>1jyo_E Protein tyrosine phosphatase SPTP; bacterial pathogenesis, infectious disease, virulence factor, type III secretion, chaperone, unfolded; 1.90A {Salmonella typhimurium} SCOP: d.184.1.2
Probab=46.46 E-value=2.5 Score=22.21 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=12.4
Q ss_pred HHHhhcCcccCCCChH
Q psy719 12 EEFLSRVSILVQCGSK 27 (45)
Q Consensus 12 ~~fL~~V~ilk~L~~~ 27 (45)
..||.+||+|++++.-
T Consensus 16 lt~L~~~PLLkN~~AV 31 (105)
T 1jyo_E 16 LTWLGKMPLFKNTEVV 31 (105)
T ss_dssp EEEEECCCCTTCHHHH
T ss_pred HHHHHhCccccchHHH
Confidence 3578999999996553
No 58
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=46.11 E-value=29 Score=19.45 Aligned_cols=25 Identities=0% Similarity=-0.160 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 59 l~~~VewaK~lp~F~~L~~~DQ~~L 83 (243)
T 2iz2_A 59 LFSQVDWARNTVFFKDLKVDDQMKL 83 (243)
T ss_dssp HHHHHHHHHTCTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhChhHhhCChHHHHHH
Confidence 3456899999999999998775544
No 59
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=45.99 E-value=18 Score=20.37 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=19.6
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 66 ~~~VewaK~lp~F~~L~~~DQ~~L 89 (248)
T 2nxx_E 66 QLIVEFAKRLPGFDKLLREDQIAL 89 (248)
T ss_dssp HHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHcCCchhhCCHHHHHHH
Confidence 456899999999999998775554
No 60
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=45.62 E-value=25 Score=19.76 Aligned_cols=25 Identities=4% Similarity=-0.126 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|..|+..+...+
T Consensus 61 l~~~VewaK~ip~F~~L~~~DQ~~L 85 (248)
T 3k6p_A 61 IVVTISWAKSIPGFSSLSLSDQMSV 85 (248)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHhcCcccccCCHHHHHHH
Confidence 4456899999999999998876555
No 61
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=45.20 E-value=26 Score=19.42 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.|++|.|.+|+..+-..+
T Consensus 58 ~~~VewaK~lp~F~~L~~~DQ~~L 81 (236)
T 1fcy_A 58 IKIVEFAKRLPGFTGLSIADQITL 81 (236)
T ss_dssp HHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHhcCCCcccCCHHHHHHH
Confidence 446899999999999998775544
No 62
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=45.09 E-value=18 Score=20.79 Aligned_cols=23 Identities=9% Similarity=0.054 Sum_probs=19.4
Q ss_pred HHHHHhhcCcccCCCChHHHhhH
Q psy719 10 LYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 10 ~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
...+|.+++|.|.+|+..+-..+
T Consensus 88 ~~VewAK~iP~F~~L~~~DQi~L 110 (269)
T 3u9q_A 88 EITEYAKSIPGFVNLDLNDQVTL 110 (269)
T ss_dssp HHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHcCCCChhhcCHHHHHHH
Confidence 47899999999999998776554
No 63
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=44.92 E-value=17 Score=20.61 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+...+
T Consensus 79 ~~~VewAK~lP~F~~L~~~DQ~~L 102 (245)
T 3n00_A 79 REVVEFAKHIPGFRDLSQHDQVTL 102 (245)
T ss_dssp HHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHcCCChhhCCHHHHHHH
Confidence 446889999999999998876655
No 64
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=44.71 E-value=20 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.|++|.|.+|+..+-..+
T Consensus 79 ~~~VewaK~lP~F~~L~~~DQi~L 102 (270)
T 1n83_A 79 QYVVEFAKRIDGFMELCQNDQIVL 102 (270)
T ss_dssp HHHHHHHHHSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHcCCChhhcCHHHHHHH
Confidence 446799999999999998775554
No 65
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=44.58 E-value=27 Score=19.52 Aligned_cols=25 Identities=4% Similarity=-0.156 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|..|+..+...+
T Consensus 49 l~~~VewaK~ip~F~~L~~~DQ~~L 73 (243)
T 3ltx_A 49 LVHLINWAKNVPGYTDLSLSDQVHL 73 (243)
T ss_dssp HHHHHHHHTTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCcchhcCCHHHHHHH
Confidence 3446899999999999998776554
No 66
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=44.10 E-value=20 Score=20.27 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=19.2
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 61 ~~~VewAK~lP~F~~L~~~DQi~L 84 (244)
T 1pdu_A 61 DVIKQFAEKIPGYFDLLPEDQELL 84 (244)
T ss_dssp HHHHHHHTTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHcCCCcccCCHHHHHHH
Confidence 346789999999999998775544
No 67
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=43.81 E-value=25 Score=19.55 Aligned_cols=25 Identities=4% Similarity=-0.091 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 50 l~~~VewaK~lp~F~~L~~~DQ~~L 74 (244)
T 3cjw_A 50 LFSAVEWARNIPFFPDLQITDQVAL 74 (244)
T ss_dssp HHHHHHHHHHSSSGGGSCHHHHHHH
T ss_pred HHHHHhHHHhCCChhcCCHHHHHHH
Confidence 3456899999999999998776555
No 68
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=43.56 E-value=29 Score=19.43 Aligned_cols=25 Identities=0% Similarity=-0.141 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+...+
T Consensus 61 l~~~VewaK~ip~F~~L~~~DQ~~L 85 (244)
T 2e2r_A 61 LVVIIGWAKHIPGFSTLSLADQMSL 85 (244)
T ss_dssp HHHHHHHHTTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCChhhCCHHHHHHH
Confidence 3456899999999999998776554
No 69
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=43.51 E-value=24 Score=19.83 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
--...+|.+++|.|..|+..+-..+
T Consensus 47 L~~~VewaK~iP~F~~L~~~DQ~~L 71 (249)
T 3p0u_A 47 LFLSMHWARSIPAFQALGQDCNTSL 71 (249)
T ss_dssp HHHHHHHHHTCTTTGGGCHHHHHHH
T ss_pred HHHHHHHHHcCcchhcCCHHHHHHH
Confidence 3456899999999999998776554
No 70
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=43.47 E-value=28 Score=19.91 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 72 l~~~VewAK~lP~F~~L~~~DQi~L 96 (271)
T 1l2j_A 72 LVHMISWAKKIPGFVELSLFDQVRL 96 (271)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCcccccCCHHHHHHH
Confidence 3456899999999999998775554
No 71
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=43.03 E-value=26 Score=19.59 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=19.6
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 70 ~~~VewaK~ip~F~~L~~~DQ~~L 93 (254)
T 3b0t_A 70 QKVIGFAKMIPGFRDLTSEDQIVL 93 (254)
T ss_dssp HHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHhhCCCCcccCCHHHHHHH
Confidence 456899999999999998775554
No 72
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=42.93 E-value=30 Score=19.19 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+...+
T Consensus 46 l~~~vewaK~lp~F~~L~~~DQ~~L 70 (240)
T 3oll_A 46 LVHMISWAKKIPGFVELSLFDQVRL 70 (240)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCcCcccCCHHHHHHH
Confidence 3456899999999999998776555
No 73
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=42.68 E-value=35 Score=19.83 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.7
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 85 ~~~VewaK~iP~F~~L~~~DQi~L 108 (303)
T 1xdk_B 85 IKIVEFAKRLPGFTGLTIADQITL 108 (303)
T ss_dssp HHHHHHHHTSTTTSSSCHHHHHHH
T ss_pred HHHHHHHHcCcccccCCHHHHHHH
Confidence 456899999999999998775554
No 74
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=42.55 E-value=30 Score=19.79 Aligned_cols=25 Identities=8% Similarity=-0.108 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+...+
T Consensus 81 l~~~VewaK~lP~F~~L~~~DQi~L 105 (266)
T 3kmr_A 81 IIKTVEFAKQLPGFTTLTIADQITL 105 (266)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCcChhhCCHHHHHHH
Confidence 3456899999999999998776554
No 75
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=42.32 E-value=30 Score=19.75 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 44 l~~~VewAK~lp~F~~L~~~DQi~L 68 (268)
T 1yye_A 44 LVHMISWAKKIPGFVELSLFDQVRL 68 (268)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHhcCcchhcCCHHHHHHH
Confidence 3457899999999999998775554
No 76
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=42.03 E-value=19 Score=20.74 Aligned_cols=26 Identities=4% Similarity=-0.109 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCcccCCCChHHHhhH
Q psy719 7 KRKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 7 kr~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
.-....+|.|++|.|.+|+..+-..+
T Consensus 59 ~L~~~V~wAK~iP~F~~L~~~DQv~L 84 (268)
T 3f5c_B 59 GLLKTLRFVKYLPCFQILPLDQQLVL 84 (268)
T ss_dssp HHHHHHHHHHTCHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccCCCcccCCHHHHHHH
Confidence 34456899999999999997765554
No 77
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=41.92 E-value=28 Score=19.77 Aligned_cols=25 Identities=4% Similarity=-0.158 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 69 l~~~VewaK~ip~F~~L~~~DQ~~L 93 (257)
T 3plz_A 69 LFSIVEWARSSIFFRELKVDDQMKL 93 (257)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCcChhcCCHHHHHHH
Confidence 3446899999999999998776554
No 78
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=41.71 E-value=30 Score=16.83 Aligned_cols=19 Identities=0% Similarity=0.083 Sum_probs=16.1
Q ss_pred ccc--CCCChHHHhhHhhhhh
Q psy719 19 SIL--VQCGSKKMGIVAKHVT 37 (45)
Q Consensus 19 ~il--k~L~~~~l~kiad~l~ 37 (45)
.++ ..|++.++..+...|.
T Consensus 101 ~~~~~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 101 NFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 566 8999999999988875
No 79
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=41.43 E-value=21 Score=20.17 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 70 ~~~VewaK~iP~F~~L~~~DQi~L 93 (248)
T 3l0l_A 70 QYVVEFAKRLSGFMELCQNDQIVL 93 (248)
T ss_dssp HHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHhcCCCcccCCHHHHHHH
Confidence 346899999999999998775554
No 80
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=41.38 E-value=29 Score=19.35 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 58 l~~~V~waK~lp~F~~L~~~DQ~~L 82 (246)
T 1ymt_A 58 FISIVDWARRCMVFKELEVADQMTL 82 (246)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhChhHHhCCHHHHHHH
Confidence 3457899999999999998776554
No 81
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=41.24 E-value=29 Score=19.79 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|..|+..+...+
T Consensus 96 l~~~vewaK~ip~F~~L~~~DQ~~L 120 (282)
T 1lbd_A 96 LFTLVEWAKRIPHFSELPLDDQVIL 120 (282)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCcChhcCCHHHHHHH
Confidence 3456899999999999998776554
No 82
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=40.87 E-value=21 Score=20.54 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=19.9
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|..|+..+...+
T Consensus 102 ~~~VewaK~lP~F~~L~~~DQ~~L 125 (283)
T 3ipq_A 102 QEIVDFAKQLPGFLQLSREDQIAL 125 (283)
T ss_dssp HHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHhcCcChhhCCHHHHHHH
Confidence 346899999999999998876655
No 83
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=40.62 E-value=33 Score=19.54 Aligned_cols=25 Identities=4% Similarity=-0.158 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 62 l~~~VewAK~ip~F~~L~~~DQv~L 86 (269)
T 1t7r_A 62 LVHVVKWAKALPGFRNLHVDDQMAV 86 (269)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCccHhhCCHHHHHHH
Confidence 3456899999999999998775544
No 84
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=40.51 E-value=30 Score=19.69 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 81 l~~~VewaK~lp~F~~L~~~DQi~L 105 (266)
T 2r40_D 81 VQLIVEFAKGLPGFAKISQSDQITL 105 (266)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHhcCcccccCCHHHHHHH
Confidence 3456899999999999998775554
No 85
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=39.90 E-value=40 Score=19.67 Aligned_cols=24 Identities=4% Similarity=-0.072 Sum_probs=19.7
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|..|+..+-..+
T Consensus 116 ~~~VewAK~iP~F~~L~~~DQi~L 139 (302)
T 2hc4_A 116 QKVIGFAKMIPGFRDLTAEDQIAL 139 (302)
T ss_dssp HHHHHHHTTSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHcCCChhhCCHHHHHHH
Confidence 457899999999999998775554
No 86
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=39.75 E-value=20 Score=16.09 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=16.9
Q ss_pred CcccCCCChHHHhhHhhhhhe
Q psy719 18 VSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~~ 38 (45)
.|-+..|++.++..|++.+..
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHh
Confidence 565678999999999987753
No 87
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=39.43 E-value=36 Score=19.33 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|..|+..+...+
T Consensus 60 l~~~VewaK~lp~F~~L~~~DQ~~L 84 (279)
T 1hg4_A 60 LFQMVEYARMMPHFAQVPLDDQVIL 84 (279)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHhcCCChhhCCHHHHHHH
Confidence 3456899999999999998775544
No 88
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=39.00 E-value=33 Score=19.38 Aligned_cols=25 Identities=4% Similarity=-0.048 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|..|+..+...+
T Consensus 55 l~~~VewaK~lp~F~~L~~~DQ~~L 79 (264)
T 1g2n_A 55 IAALVVWARDIPHFSQLEMEDQILL 79 (264)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCChhcCCHHHHHHH
Confidence 3456899999999999998775554
No 89
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=38.84 E-value=14 Score=17.52 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=9.4
Q ss_pred HHHHHhhcCccc
Q psy719 10 LYEEFLSRVSIL 21 (45)
Q Consensus 10 ~~~~fL~~V~il 21 (45)
+..+||.+||--
T Consensus 38 qifdflenvprg 49 (70)
T 2q2k_A 38 QIFDFLENVPRG 49 (70)
T ss_dssp HHHHHHTTSCTT
T ss_pred HHHHHHHcCCCc
Confidence 467899999853
No 90
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=38.75 E-value=5.2 Score=24.00 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.9
Q ss_pred cCcccCCCChHHHhhHhhhhhee
Q psy719 17 RVSILVQCGSKKMGIVAKHVTCA 39 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~~ 39 (45)
++|-|++|+-.+-.-+||+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (332)
T 3bjd_A 9 SLPQLQNLPIEEARIVADALAVH 31 (332)
T ss_dssp HHHHHHTCCSHHHHHHHHHHSTT
T ss_pred cchhhhccchHHHHHHHHHhCcC
Confidence 56889999999999999999764
No 91
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=38.56 E-value=22 Score=20.65 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 73 ~~~VewAK~iP~F~~L~~~DQi~L 96 (292)
T 2o4j_A 73 QKVIGFAKMIPGFRDLTSDDQIVL 96 (292)
T ss_dssp HHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHcCcchhhccHHHHHHH
Confidence 346899999999999998775544
No 92
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=38.26 E-value=17 Score=20.35 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 64 ~~~VewaK~lp~F~~L~~~DQ~~L 87 (244)
T 1nq7_A 64 QYVVEFAKRITGFMELCQNDQILL 87 (244)
T ss_dssp HHHHHHHHTCHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCcccCCHHHHHHH
Confidence 346799999999999998775554
No 93
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=37.67 E-value=17 Score=17.77 Aligned_cols=28 Identities=14% Similarity=0.352 Sum_probs=19.3
Q ss_pred HHHHhhcC--cccCCCChHHHhhHhhhhhe
Q psy719 11 YEEFLSRV--SILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 11 ~~~fL~~V--~ilk~L~~~~l~kiad~l~~ 38 (45)
|..|+..+ .+..+|+..++.+|+..|..
T Consensus 36 y~~f~~~lir~l~~~L~~~dikkv~s~l~~ 65 (80)
T 3bpj_A 36 YASFLEVLVRDVCISLEIDDLKKITNSLTV 65 (80)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 44444443 45678999999999887753
No 94
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=37.57 E-value=29 Score=19.69 Aligned_cols=24 Identities=0% Similarity=0.155 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 88 ~~~v~waK~ip~F~~L~~~DQ~~L 111 (271)
T 1ovl_A 88 EIIRGWAEKIPGFADLPKADQDLL 111 (271)
T ss_dssp HHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHcCCCcccCChHHHHHH
Confidence 446799999999999998775554
No 95
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=37.38 E-value=17 Score=19.92 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=20.1
Q ss_pred HHHHHHhhcCcccCCCChHHHhhHh
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIVA 33 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~kia 33 (45)
....+|.+++|.|..|+..+...+.
T Consensus 55 ~~~v~wak~~p~F~~L~~~DQ~~LL 79 (237)
T 1pzl_A 55 LVLVEWAKYIPAFCELPLDDQVALL 79 (237)
T ss_dssp HHHHHHHTTCHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhCcCcccCCHHHHHHHH
Confidence 3468999999999999987765553
No 96
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=37.33 E-value=39 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=19.7
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 130 ~~~VewAK~lP~F~~L~~~DQi~L 153 (310)
T 1z5x_E 130 QLIVEFSKRLPGFDKLIREDQIAL 153 (310)
T ss_dssp HHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHcCcchhhCCHHHHHHH
Confidence 457899999999999998775554
No 97
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=37.31 E-value=40 Score=19.12 Aligned_cols=25 Identities=0% Similarity=-0.207 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+...+
T Consensus 53 l~~~VewaK~lp~F~~L~~~DQ~~L 77 (260)
T 3vhv_A 53 MIQVVKWAKVLPGFKNLPLEDQITL 77 (260)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhChHHhcCCHHHHHHH
Confidence 3456899999999999998775554
No 98
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=36.76 E-value=37 Score=19.22 Aligned_cols=25 Identities=0% Similarity=-0.215 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 54 l~~~VewaK~ip~F~~L~~~DQ~~L 78 (261)
T 1sqn_A 54 LLSVVKWSKSLPGFRNLHIDDQITL 78 (261)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCccHhhCCHHHHHHH
Confidence 3456899999999999998775544
No 99
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=36.44 E-value=37 Score=19.85 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+-..+
T Consensus 57 L~~~VewAK~lP~F~~L~~~DQi~L 81 (298)
T 2ocf_A 57 LVHMINWAKRVPGFVDLTLHDQVHL 81 (298)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCcchhcCCHHHHHHH
Confidence 3456899999999999998776554
No 100
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=36.36 E-value=42 Score=19.07 Aligned_cols=24 Identities=0% Similarity=-0.162 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+-..+
T Consensus 56 ~~~VewaK~iP~F~~L~~~DQ~~L 79 (261)
T 3mnp_A 56 IAAVKWAKAIPGFRNLHLDDQMTL 79 (261)
T ss_dssp HHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHhCcChhcCCHHHHHHH
Confidence 345899999999999998776554
No 101
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=36.12 E-value=32 Score=19.67 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=19.1
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|-|++|-|.+|+..+-..+
T Consensus 55 ~~iVefAK~iPgF~~L~~~DQi~L 78 (244)
T 3gyt_A 55 RRLVKMAKRLGAFNEISEAGKFSL 78 (244)
T ss_dssp HHHHHHHHTCGGGGGSCHHHHHHH
T ss_pred HHHHHHHccCCCcccCCHHHHHHH
Confidence 346899999999999988764444
No 102
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=35.79 E-value=51 Score=19.26 Aligned_cols=25 Identities=0% Similarity=-0.207 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.+++|.|.+|+..+...+
T Consensus 87 l~~~VewAK~lP~F~~L~~~DQi~L 111 (294)
T 3vhu_A 87 MIQVVKWAKVLPGFKNLPLEDQITL 111 (294)
T ss_dssp HHHHHHHHHTCTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCcchhhCCHHHHHHH
Confidence 3456899999999999998776554
No 103
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=34.90 E-value=33 Score=19.55 Aligned_cols=24 Identities=0% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
+...+|-|+||-|.+|+-.+-..+
T Consensus 66 ~~iV~wAK~iP~F~~L~~~DQi~L 89 (257)
T 3v3e_B 66 EVIRKWAEKIPGFAELSPADQDLL 89 (257)
T ss_dssp HHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHcCCCcccCCHHHHHHH
Confidence 446899999999999998775554
No 104
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=34.05 E-value=29 Score=19.16 Aligned_cols=20 Identities=20% Similarity=0.670 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhcCcccCC
Q psy719 4 TIRKRKLYEEFLSRVSILVQ 23 (45)
Q Consensus 4 ~~~kr~~~~~fL~~V~ilk~ 23 (45)
-++|-++|.++.+.+||=..
T Consensus 38 liRrAEmYQ~YMK~iPIP~~ 57 (157)
T 1vk5_A 38 LLRRAEMYQDYMKQVPIPTN 57 (157)
T ss_dssp THHHHHHHHHHHHTSCCCSS
T ss_pred hhhHHHHHHHHHHhCCCCcc
Confidence 46788999999999998654
No 105
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=32.64 E-value=24 Score=20.09 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=19.7
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|.+|+..+...+
T Consensus 84 ~~~VewaK~lP~F~~L~~~DQ~~L 107 (267)
T 3ilz_A 84 TRVVDFAKKLPMFSELPXEDQIIL 107 (267)
T ss_dssp HHHHHHHHTSHHHHTSCHHHHHHH
T ss_pred HHHHHHHhcCcchhhCCHhHHHHH
Confidence 446899999999999998776555
No 106
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=32.40 E-value=27 Score=15.70 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=16.2
Q ss_pred CcccCCCChHHHhhHhhhhh
Q psy719 18 VSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~ 37 (45)
.|-+..|++.++..|++.+.
T Consensus 59 Mp~~~~Ls~~ei~~l~~yl~ 78 (81)
T 1a56_A 59 MPPNVNVSDADAKALADWIL 78 (81)
T ss_dssp BCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 56567899999999998764
No 107
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=32.00 E-value=26 Score=19.53 Aligned_cols=25 Identities=4% Similarity=-0.077 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.|++|.|.+|+..+-..+
T Consensus 67 l~~~VewaK~lp~F~~L~~~DQ~~L 91 (246)
T 1xvp_B 67 VLQVIKFTKDLPVFRSLPIEDQISL 91 (246)
T ss_dssp HHHHHHHHTTCHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCcchhhCCHHHHHHH
Confidence 3457899999999999998775544
No 108
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=31.99 E-value=52 Score=16.42 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCcccCCCChHHHhhHhhhhh
Q psy719 7 KRKLYEEFLSRVSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 7 kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~ 37 (45)
-.+.....+..+ ++..|++.++..+...|.
T Consensus 108 ~~~~~~~~~~~~-~~~~l~~~e~~~l~~~l~ 137 (149)
T 4hbl_A 108 QQEAVFEAISSC-LPQEFDTTEYDETKYVFE 137 (149)
T ss_dssp HHHHHHHHHHTT-SCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhhCCHHHHHHHHHHHH
Confidence 334455555566 899999999988887764
No 109
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=31.98 E-value=24 Score=15.65 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=16.4
Q ss_pred cCcccCCCChHHHhhHhhhhhe
Q psy719 17 RVSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~ 38 (45)
+|.++...++.+..+|++++..
T Consensus 4 ~I~~~~Grs~eqk~~L~~~it~ 25 (65)
T 3ry0_A 4 RVTLLEGRSPQEVAALGEALTA 25 (65)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHH
Confidence 4567778888888888877653
No 110
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=31.84 E-value=23 Score=20.07 Aligned_cols=24 Identities=4% Similarity=0.073 Sum_probs=19.4
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|-|++|.|.+|+..+-..+
T Consensus 55 ~~~VewAK~iP~F~~L~~~DQi~L 78 (243)
T 3up3_A 55 RRFVKMAKRLPAFNDLSQDGKFAL 78 (243)
T ss_dssp HHHHHHHHHCHHHHTSCHHHHHHH
T ss_pred HHHHHHHhcCCCcccCCHHHHHHH
Confidence 456899999999999988765544
No 111
>1f9f_A Regulatory protein E2; dimeric beta barrel, activator, DNA-binding, trans-acting factor, transcription; 1.90A {Human papillomavirus type 18} SCOP: d.58.8.1 PDB: 1jj4_A
Probab=31.03 E-value=24 Score=17.47 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=11.8
Q ss_pred HHHHHHhhcCcccCCC
Q psy719 9 KLYEEFLSRVSILVQC 24 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L 24 (45)
++...||+.|++=++.
T Consensus 59 ~QR~~FL~~V~lP~gv 74 (83)
T 1f9f_A 59 TQRTKFLNTVAIPDSV 74 (83)
T ss_dssp HHHHHHHHHCCCCTTS
T ss_pred HHHHHHHhcCCCCCCe
Confidence 3467899999986654
No 112
>2wjn_C Photosynthetic reaction center cytochrome C subun; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C* 2prc_C* 2i5n_C* 2wjm_C* 2x5u_C* 2x5v_C* 3d38_C* 3g7f_C* 3prc_C* 4ac5_C* 5prc_C* 6prc_C* 7prc_C* 3t6e_C* 2jbl_C* 1vrn_C* 3t6d_C*
Probab=30.66 E-value=26 Score=21.73 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.0
Q ss_pred hhcCcccCCCChHHHhhHhhhhh
Q psy719 15 LSRVSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 15 L~~V~ilk~L~~~~l~kiad~l~ 37 (45)
-++|..|++|+..+..++-+++.
T Consensus 56 y~NvqVL~dls~~ef~rlM~amt 78 (336)
T 2wjn_C 56 YKNVKVLGNLTEAEFLRTMTAIT 78 (336)
T ss_dssp SSSCSSSTTSBHHHHHHHHHHHH
T ss_pred hhhhhhhcCCCHHHHHHHHHHHH
Confidence 37889999999999999888775
No 113
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=30.39 E-value=34 Score=15.24 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=15.9
Q ss_pred CcccCCCChHHHhhHhhhhhe
Q psy719 18 VSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~~ 38 (45)
.|-+ .|++.++..|++.|..
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 61 MPPN-AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp BCCC-CCCHHHHHHHHHHHHT
T ss_pred CCCC-CCCHHHHHHHHHHHHh
Confidence 5656 8999999999987753
No 114
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=30.37 E-value=40 Score=21.11 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=19.6
Q ss_pred HHHHHhhcCcccCCCChHHHhhHh
Q psy719 10 LYEEFLSRVSILVQCGSKKMGIVA 33 (45)
Q Consensus 10 ~~~~fL~~V~ilk~L~~~~l~kia 33 (45)
...+|.+++|.|..|+..+...|.
T Consensus 283 ~vVeWAK~iP~F~~L~~~DQi~LL 306 (467)
T 3dzy_A 283 TLVEWAKRIPHFSELPLDDQVILL 306 (467)
T ss_dssp HHHHHHHHSTTSTTSCHHHHHHHH
T ss_pred HHHHHHHhCcchhcCCHHHHHHHH
Confidence 457999999999999988765553
No 115
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=30.11 E-value=46 Score=15.23 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcC-cccCCCChHHHhhHhh
Q psy719 7 KRKLYEEFLSRV-SILVQCGSKKMGIVAK 34 (45)
Q Consensus 7 kr~~~~~fL~~V-~ilk~L~~~~l~kiad 34 (45)
+|.++.+.++.+ ..|.+|+...+.-+..
T Consensus 8 ~~~e~~~~~~~L~~MFP~lD~evI~~Vl~ 36 (54)
T 1p3q_Q 8 EENERKDTLNTLQNMFPDMDPSLIEDVCI 36 (54)
T ss_dssp HHHHHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 455677777776 6899999888665543
No 116
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=29.79 E-value=51 Score=20.23 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=18.2
Q ss_pred HHHHhhcCcccCCCChHHHhhH
Q psy719 11 YEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 11 ~~~fL~~V~ilk~L~~~~l~ki 32 (45)
..+|-+++|.|.+|+..+-..+
T Consensus 238 ~VewAK~iP~F~~L~~~DQi~L 259 (419)
T 3dzy_D 238 ITEYAKSIPGFVNLDLNDQVTL 259 (419)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHH
T ss_pred HHHHhccCCCcccCCHHHHHHH
Confidence 5799999999999998765444
No 117
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=29.75 E-value=28 Score=19.90 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.9
Q ss_pred cCcccCCCChHHHhhHhhhhhe
Q psy719 17 RVSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~ 38 (45)
++|+-..+++.++..|++++..
T Consensus 338 ~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 338 SLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp EECCCTTCCHHHHHHHHHHHHC
T ss_pred EccCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999864
No 118
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.59 E-value=29 Score=20.40 Aligned_cols=23 Identities=0% Similarity=-0.070 Sum_probs=19.8
Q ss_pred cCcccCCCChHHHhhHhhhhhee
Q psy719 17 RVSILVQCGSKKMGIVAKHVTCA 39 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~~ 39 (45)
++|+...|++.++..|++++...
T Consensus 349 ~lp~~~~~t~~di~~v~~~l~~~ 371 (377)
T 3ju7_A 349 SLPLWEGMTKEIVEQIVICLGQK 371 (377)
T ss_dssp EECCCTTCCHHHHHHHHHHHTC-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999998754
No 119
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=29.57 E-value=26 Score=17.78 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHhhcCcccCCC
Q psy719 9 KLYEEFLSRVSILVQC 24 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L 24 (45)
++...||+.|++=+..
T Consensus 57 ~QR~~FL~tVklPkgv 72 (93)
T 2q79_A 57 WQRDQFLSQVKIPKTI 72 (93)
T ss_dssp HHHHHHHHHSCCCTTS
T ss_pred HHHHHHHhcCCCCCCe
Confidence 4467899999986654
No 120
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=29.39 E-value=27 Score=17.23 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=11.8
Q ss_pred HHHHHHhhcCcccCCC
Q psy719 9 KLYEEFLSRVSILVQC 24 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L 24 (45)
++...||+.|++=++.
T Consensus 58 ~QR~~FL~~V~lP~gv 73 (82)
T 1a7g_E 58 SQRDDFLNTVVIPNTV 73 (82)
T ss_dssp HHHHHHHHHSCCCTTS
T ss_pred HHHHHHHhcCCCCCCe
Confidence 3467899999986654
No 121
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=29.37 E-value=28 Score=20.05 Aligned_cols=21 Identities=5% Similarity=-0.184 Sum_probs=18.6
Q ss_pred cCcccCCCChHHHhhHhhhhh
Q psy719 17 RVSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~ 37 (45)
++|+...+++.++.+++++|+
T Consensus 370 ~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 370 FVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp EEECCSSCCHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHhhC
Confidence 688999999999999999873
No 122
>2bop_A Protein (E2); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.70A {Bovine papillomavirus type 1} SCOP: d.58.8.1 PDB: 1jjh_A
Probab=29.27 E-value=28 Score=17.29 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=11.9
Q ss_pred HHHHHHhhcCcccCCC
Q psy719 9 KLYEEFLSRVSILVQC 24 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L 24 (45)
++...||+.|++=++.
T Consensus 59 ~QR~~FL~tV~lPkgv 74 (85)
T 2bop_A 59 SQRQDFLKHVPLPPGM 74 (85)
T ss_dssp HHHHHHHHHSCCCTTC
T ss_pred HHHHHHHhcCCCCCCe
Confidence 4467899999986654
No 123
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=28.95 E-value=37 Score=20.13 Aligned_cols=24 Identities=13% Similarity=-0.049 Sum_probs=19.6
Q ss_pred HHHHHHhhcCcccCCCChHHHhhH
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
....+|.+++|.|..|+..+-..+
T Consensus 134 ~~~VewAK~lP~F~~L~~~DQi~L 157 (316)
T 1nrl_A 134 KGIISFAKVISYFRDLPIEDQISL 157 (316)
T ss_dssp HHHHHHHHHCHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhCcchhhcCHHHHHHH
Confidence 446899999999999998775554
No 124
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=28.38 E-value=45 Score=14.57 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=15.6
Q ss_pred CcccCCCChHHHhhHhhhhh
Q psy719 18 VSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~ 37 (45)
.|- ..|++.++..|++.+.
T Consensus 50 Mp~-~~ls~~ei~~l~~yl~ 68 (71)
T 1c75_A 50 MPG-GIAKGAEAEAVAAWLA 68 (71)
T ss_dssp BCS-CSSCHHHHHHHHHHHH
T ss_pred CCC-CCCCHHHHHHHHHHHH
Confidence 666 7899999999988764
No 125
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=27.86 E-value=30 Score=17.26 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=11.9
Q ss_pred HHHHHHhhcCcccCCC
Q psy719 9 KLYEEFLSRVSILVQC 24 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L 24 (45)
++...||+.|++=++.
T Consensus 60 ~QR~~FL~~V~lPkgv 75 (87)
T 1r8h_A 60 EQRQQFLNVVKIPPTI 75 (87)
T ss_dssp HHHHHHHHHCCCCTTC
T ss_pred HHHHHHHhcCCCCCCe
Confidence 3467899999986654
No 126
>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2
Probab=27.82 E-value=31 Score=21.76 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.0
Q ss_pred hhcCcccCCCChHHHhhHhhhhh
Q psy719 15 LSRVSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 15 L~~V~ilk~L~~~~l~kiad~l~ 37 (45)
-++|..|++|+..+..++-+++.
T Consensus 54 y~NvqVLgdls~~ef~rlM~amt 76 (382)
T 1eys_C 54 YQSVQVLKDLSVGEFTRTMVAVT 76 (382)
T ss_dssp CSSCSSSTTSBHHHHHHHHHHHH
T ss_pred hhhhhhhcCCCHHHHHHHHHHHH
Confidence 37899999999999999887775
No 127
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=27.73 E-value=45 Score=14.78 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=15.6
Q ss_pred CcccCCCChHHHhhHhhhhh
Q psy719 18 VSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~ 37 (45)
.|-+ .|++.++..|++.|.
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 61 MPPN-PVTEEEAKILAEWVL 79 (82)
T ss_dssp CCCC-SCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 5666 899999999988775
No 128
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=27.54 E-value=64 Score=16.06 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=16.8
Q ss_pred CcccCCCChHHHhhHhhhhhe
Q psy719 18 VSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~~ 38 (45)
.|-+..|++.++..|+..|..
T Consensus 101 MP~~~~Lsd~ei~alaaYl~~ 121 (137)
T 1mz4_A 101 FPKMRNLTEKDLVAIAGHILV 121 (137)
T ss_dssp SGGGTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 455677999999999987753
No 129
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=27.09 E-value=42 Score=15.01 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=15.5
Q ss_pred CcccCCCChHHHhhHhhhhh
Q psy719 18 VSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~ 37 (45)
.|-+ .|++.++..|++.+.
T Consensus 59 Mp~~-~Lsd~ei~~l~~yl~ 77 (80)
T 1ayg_A 59 MPPQ-NVTDAEAKQLAQWIL 77 (80)
T ss_dssp BCCC-CCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 5656 799999999998764
No 130
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=27.02 E-value=4.1 Score=16.77 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=12.9
Q ss_pred HHHHHHhhcCcccCCCChHHHhh
Q psy719 9 KLYEEFLSRVSILVQCGSKKMGI 31 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~~~~l~k 31 (45)
..++.||++..-|-.|.+..+.+
T Consensus 8 klheeflkkfeellklheerlkk 30 (32)
T 1m3w_A 8 KLHEEFLKKFEELLKLHEERLKK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677887765554444444433
No 131
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=26.73 E-value=47 Score=16.93 Aligned_cols=19 Identities=11% Similarity=-0.111 Sum_probs=15.5
Q ss_pred cccCCCChHHHhhHhhhhh
Q psy719 19 SILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 19 ~ilk~L~~~~l~kiad~l~ 37 (45)
|-|..|++.++..|+..|.
T Consensus 102 p~~~~Lsd~ei~~laaYl~ 120 (135)
T 1e29_A 102 PEMRNYTEDDIFDVAGYTL 120 (135)
T ss_dssp GGGTTCCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHH
Confidence 4456899999999998875
No 132
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=26.70 E-value=25 Score=16.59 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=7.9
Q ss_pred HHHHhhcCccc
Q psy719 11 YEEFLSRVSIL 21 (45)
Q Consensus 11 ~~~fL~~V~il 21 (45)
-+.-|++||.|
T Consensus 9 Ae~~LkkIP~F 19 (62)
T 2l09_A 9 AKTKLKNIPFF 19 (62)
T ss_dssp HHHHHHTSCGG
T ss_pred HHHHHHhCCHH
Confidence 34568888887
No 133
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=25.01 E-value=17 Score=20.02 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=20.2
Q ss_pred cCcccCCCChHHHhhHhhhhhee
Q psy719 17 RVSILVQCGSKKMGIVAKHVTCA 39 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~~ 39 (45)
+++++.+|++.+...|.+.|...
T Consensus 2 ~~~Ly~~L~~~da~~i~~~L~~~ 24 (171)
T 1yj7_A 2 KEQLYTGLTEKEANQMQALLLSN 24 (171)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHT
T ss_pred CccccCCCCHHHHHHHHHHHHHc
Confidence 46889999999999999999874
No 134
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=24.34 E-value=40 Score=20.34 Aligned_cols=25 Identities=4% Similarity=-0.158 Sum_probs=10.7
Q ss_pred HHHHHHHhhcCcccCCCChHHHhhH
Q psy719 8 RKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 8 r~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
-....+|.|++|.|..|+..+...+
T Consensus 164 L~~~VewAK~iP~F~~L~~~DQi~L 188 (352)
T 3tx7_B 164 LFSIVEWARSSIFFRELKVDDQMKL 188 (352)
T ss_dssp HHHHHHHTCCC----------CHHH
T ss_pred HHHHHHHHHcChhhhhCCHHHHHHH
Confidence 4456899999999999987765544
No 135
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=24.15 E-value=27 Score=18.96 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.0
Q ss_pred hHHHhhHhhhhh---eeeecCCC
Q psy719 26 SKKMGIVAKHVT---CAMVEKGE 45 (45)
Q Consensus 26 ~~~l~kiad~l~---~~~y~~Ge 45 (45)
+..+..++.... ...|.+|+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge 52 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNK 52 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTC
T ss_pred HHHHHHHhhccchheeEEECCCC
Confidence 678888888888 89998886
No 136
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=23.63 E-value=57 Score=14.45 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.5
Q ss_pred cCccc-CCCChHHHhhHhhhhh
Q psy719 17 RVSIL-VQCGSKKMGIVAKHVT 37 (45)
Q Consensus 17 ~V~il-k~L~~~~l~kiad~l~ 37 (45)
..|-+ ..|++.++..|+..|.
T Consensus 58 ~Mp~~~~~ls~~ei~~l~~yl~ 79 (86)
T 3ph2_B 58 GMPAFKGRLTDDQIAAVAAYVL 79 (86)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHH
T ss_pred CCCCcccCCCHHHHHHHHHHHH
Confidence 45666 5799999999988764
No 137
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=23.11 E-value=41 Score=15.28 Aligned_cols=29 Identities=3% Similarity=0.132 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCcccCCCChHHHhhH
Q psy719 4 TIRKRKLYEEFLSRVSILVQCGSKKMGIV 32 (45)
Q Consensus 4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~ki 32 (45)
+.++++.......++.-++..+.++|.++
T Consensus 13 G~kr~~~LL~~Fgs~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 13 NAKNCRSLMHHVKNIAELAALSQDELTSI 41 (63)
T ss_dssp CHHHHHHHHHHCSSHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHCCHHHHHHH
Confidence 34566667777788888888888888776
No 138
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=22.71 E-value=29 Score=19.44 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcCccc
Q psy719 5 IRKRKLYEEFLSRVSIL 21 (45)
Q Consensus 5 ~~kr~~~~~fL~~V~il 21 (45)
.+.+++|..||++|.-|
T Consensus 189 ~KE~~eYi~WL~~lk~F 205 (209)
T 1p32_A 189 ALEHQEYITFLEDLKSF 205 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677899999987543
No 139
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=22.59 E-value=55 Score=16.36 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=13.9
Q ss_pred CCCChHHHhhHhhhhhe
Q psy719 22 VQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 22 k~L~~~~l~kiad~l~~ 38 (45)
+.|++.++..|+..|..
T Consensus 119 ~~Ls~~ei~~l~aYl~s 135 (138)
T 1h32_B 119 PLMTAGQIEDVVAYLMT 135 (138)
T ss_dssp CSSCHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 37999999999987753
No 140
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=22.53 E-value=29 Score=17.97 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=17.0
Q ss_pred ccCCCChHHHhhHhhhhheeee
Q psy719 20 ILVQCGSKKMGIVAKHVTCAMV 41 (45)
Q Consensus 20 ilk~L~~~~l~kiad~l~~~~y 41 (45)
=|+.+++.+|.+||-.+.+..+
T Consensus 10 DFSk~Sd~ELl~mAG~V~p~~~ 31 (100)
T 2xrh_A 10 DFSKTSDEDLAKMAGVVAPQDI 31 (100)
T ss_dssp SSTTSCHHHHHHTTTTSCGGGH
T ss_pred chhhcCHHHHHHHHCcCChhhh
Confidence 3678999999999887766543
No 141
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=22.39 E-value=81 Score=15.57 Aligned_cols=18 Identities=0% Similarity=0.139 Sum_probs=14.1
Q ss_pred ccCCCChHHHhhHhhhhh
Q psy719 20 ILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 20 ilk~L~~~~l~kiad~l~ 37 (45)
+|.+..+-+..+++..|-
T Consensus 30 ~~P~~k~r~vKK~~~~LV 47 (78)
T 1ucr_A 30 LFPDMKQREVKKILTALV 47 (78)
T ss_dssp HCTTSCHHHHHHHHHHHH
T ss_pred HccccCHHHHHHHHHHHH
Confidence 567788888889888764
No 142
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=22.13 E-value=60 Score=21.00 Aligned_cols=30 Identities=3% Similarity=-0.143 Sum_probs=24.8
Q ss_pred HHHHhhcC------cccCCCChHHHhhHhhhhheee
Q psy719 11 YEEFLSRV------SILVQCGSKKMGIVAKHVTCAM 40 (45)
Q Consensus 11 ~~~fL~~V------~ilk~L~~~~l~kiad~l~~~~ 40 (45)
+.+|++.| .+-.+++++++.+++|.|.+..
T Consensus 292 HVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~ 327 (462)
T 3rzi_A 292 HIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHN 327 (462)
T ss_dssp HHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTC
T ss_pred HHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCC
Confidence 56777764 7888999999999999997653
No 143
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=22.10 E-value=25 Score=16.69 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=6.8
Q ss_pred HHHhhcCccc
Q psy719 12 EEFLSRVSIL 21 (45)
Q Consensus 12 ~~fL~~V~il 21 (45)
+.-|++||.|
T Consensus 11 e~~LkkIP~F 20 (63)
T 2kru_A 11 EKMLGKVPFF 20 (63)
T ss_dssp HHHHTTSCHH
T ss_pred HHHHHhCCHH
Confidence 4567778766
No 144
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=22.02 E-value=45 Score=19.01 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=20.2
Q ss_pred cCcccCCCChHHHhhHhhhhhee
Q psy719 17 RVSILVQCGSKKMGIVAKHVTCA 39 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~~ 39 (45)
++|+-..+++.++.++++++...
T Consensus 342 rl~~~~~~t~~di~~~~~~l~~~ 364 (373)
T 3frk_A 342 SIPIWYGMKNEEIEYVIDKINAW 364 (373)
T ss_dssp EECCCTTCCHHHHHHHHHHHHTC
T ss_pred EccCCCCCCHHHHHHHHHHHHHH
Confidence 67888899999999999998754
No 145
>2yu0_A Interferon-activable protein 205; PAAD_dapin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.88 E-value=20 Score=18.28 Aligned_cols=18 Identities=6% Similarity=-0.119 Sum_probs=13.9
Q ss_pred CCChHHHhhHhhhhheee
Q psy719 23 QCGSKKMGIVAKHVTCAM 40 (45)
Q Consensus 23 ~L~~~~l~kiad~l~~~~ 40 (45)
.+..+.+.+|||.|...+
T Consensus 39 ~le~~dridiAdlmv~~y 56 (94)
T 2yu0_A 39 NQEQYTTIQIANMMEEKF 56 (94)
T ss_dssp CSSSCCHHHHHHHHHHHC
T ss_pred HHhhccHHHHHHHHHHHc
Confidence 367888999999887544
No 146
>3mop_K IRAK-2, interleukin-1 receptor-associated kinase-like 2; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=21.87 E-value=42 Score=17.43 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=13.2
Q ss_pred cCCCChHHHhhHhhhhhe
Q psy719 21 LVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 21 lk~L~~~~l~kiad~l~~ 38 (45)
+-+|+...+.++|+.|.+
T Consensus 4 Iy~LP~~v~~~Lc~iLD~ 21 (111)
T 3mop_K 4 IYQLPSWVLDDLCRNMDA 21 (111)
T ss_dssp GGGSCHHHHHHHTTTTTT
T ss_pred hhhCCHHHHHHHHHHcCC
Confidence 446778888888887765
No 147
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=21.68 E-value=57 Score=14.42 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=13.4
Q ss_pred CCCChHHHhhHhhhhh
Q psy719 22 VQCGSKKMGIVAKHVT 37 (45)
Q Consensus 22 k~L~~~~l~kiad~l~ 37 (45)
..|++.++..|++.|.
T Consensus 69 ~~ls~~ei~~l~~yl~ 84 (87)
T 2zxy_A 69 KGLSDAELKALADFIL 84 (87)
T ss_dssp GGCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 5799999999988764
No 148
>1dbd_A Regulatory protein E2; DNA-binding domain, gene regulation; NMR {Bovine papillomavirus type 1} SCOP: d.58.8.1
Probab=21.54 E-value=43 Score=17.15 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=12.3
Q ss_pred HHHHHHhhcCcccCCCC
Q psy719 9 KLYEEFLSRVSILVQCG 25 (45)
Q Consensus 9 ~~~~~fL~~V~ilk~L~ 25 (45)
++...||+.|++=++..
T Consensus 74 ~QR~~FL~tVklPkgv~ 90 (100)
T 1dbd_A 74 SQRQDFLKHVPLPPGMN 90 (100)
T ss_dssp HHHHTHHHHSCCCTTCC
T ss_pred HHHHHHHhcCCCCCCeE
Confidence 34678999999866543
No 149
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.38 E-value=15 Score=14.87 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=12.9
Q ss_pred cCCCChHHHhhHhhhhhee
Q psy719 21 LVQCGSKKMGIVAKHVTCA 39 (45)
Q Consensus 21 lk~L~~~~l~kiad~l~~~ 39 (45)
+++|+--+++.++++++++
T Consensus 10 i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 10 IEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHSBHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHH
Confidence 4456666777788777754
No 150
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=21.35 E-value=73 Score=15.42 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.1
Q ss_pred CcccCCCChHHHhhHhhhhhe
Q psy719 18 VSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~~ 38 (45)
.|-+..|++.++..|++.|..
T Consensus 99 Mp~~~~Ls~~ei~~l~~Yl~~ 119 (129)
T 1f1c_A 99 FPKMRNISEDDLYNVAGYILL 119 (129)
T ss_dssp CGGGSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 344467999999999988754
No 151
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=21.28 E-value=50 Score=13.90 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=13.4
Q ss_pred CcccCCCChHHHhhHhhhhh
Q psy719 18 VSILVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~ 37 (45)
|.++...++.+..+|++++.
T Consensus 8 i~~~~g~s~e~k~~l~~~l~ 27 (63)
T 2x4k_A 8 VKLLEGRSDEQLKNLVSEVT 27 (63)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 44556777777777776654
No 152
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=21.19 E-value=68 Score=14.43 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=17.7
Q ss_pred cCccc--CCCChHHHhhHhhhhhe
Q psy719 17 RVSIL--VQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 17 ~V~il--k~L~~~~l~kiad~l~~ 38 (45)
..|-+ ..|++.++..|++.|..
T Consensus 49 ~Mp~~~~~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 49 AMPAFPASYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TBCCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCcccCCCHHHHHHHHHHHHH
Confidence 47777 47999999999988754
No 153
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=21.18 E-value=45 Score=19.65 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcCcccCCCC
Q psy719 5 IRKRKLYEEFLSRVSILVQCG 25 (45)
Q Consensus 5 ~~kr~~~~~fL~~V~ilk~L~ 25 (45)
.+||++|.++++.+.+.+...
T Consensus 80 ~~kr~eY~~l~~~~~~~r~I~ 100 (294)
T 3qwl_A 80 MYRKEQYLDVLHALKVVRFVS 100 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhhhhhhhhh
Confidence 578999999998877666543
No 154
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=21.15 E-value=59 Score=14.52 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.3
Q ss_pred Cccc-CCCChHHHhhHhhhhh
Q psy719 18 VSIL-VQCGSKKMGIVAKHVT 37 (45)
Q Consensus 18 V~il-k~L~~~~l~kiad~l~ 37 (45)
.|-+ ..|++.++..|+..|.
T Consensus 65 Mp~~~~~ls~~ei~~l~~yl~ 85 (93)
T 3dr0_A 65 MPAFGGRLSDADIANVAAYIA 85 (93)
T ss_dssp BCCCBTTBCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 6766 5799999999988774
No 155
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=21.10 E-value=71 Score=14.27 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=23.3
Q ss_pred HHHHHhhcCcccCCCChHHHhhHhhhhhe
Q psy719 10 LYEEFLSRVSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 10 ~~~~fL~~V~ilk~L~~~~l~kiad~l~~ 38 (45)
+.+..-+.||.--+++.|-+.-|.+.|+.
T Consensus 24 eiealksrvpantsmsayirriilnhled 52 (53)
T 2kke_A 24 EIEALKSRVPANTSMSAYIRRIILNHLED 52 (53)
T ss_dssp HHHHHHTTCCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcccHHHHHHHHHHhhhcc
Confidence 45666678999999999999888888764
No 156
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=20.89 E-value=49 Score=15.83 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcCcccCC--CChHHHhhHhhh
Q psy719 5 IRKRKLYEEFLSRVSILVQ--CGSKKMGIVAKH 35 (45)
Q Consensus 5 ~~kr~~~~~fL~~V~ilk~--L~~~~l~kiad~ 35 (45)
+..++.|.+||+=+.+++. ++..++...+..
T Consensus 22 l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~ 54 (75)
T 2ld7_B 22 LRSAEAYENFLRCLVIFNQEVISRAELVQLVSP 54 (75)
T ss_dssp HCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHH
T ss_pred cCCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHH
Confidence 3346889999998888876 677777665443
No 157
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.80 E-value=35 Score=14.63 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=14.7
Q ss_pred ccCCCChHHHhhHhhhhhee
Q psy719 20 ILVQCGSKKMGIVAKHVTCA 39 (45)
Q Consensus 20 ilk~L~~~~l~kiad~l~~~ 39 (45)
-+++|+--|+..+.+.|+++
T Consensus 9 ~i~~lTvlE~~eLvk~leek 28 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDK 28 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 35667777888888888765
No 158
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=20.61 E-value=52 Score=13.95 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=14.3
Q ss_pred CcccCCCChHHHhhHhhhhhe
Q psy719 18 VSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 18 V~ilk~L~~~~l~kiad~l~~ 38 (45)
|.++...++.+..++++++..
T Consensus 5 I~~~~grs~e~k~~l~~~i~~ 25 (62)
T 1otf_A 5 LYIIEGRTDEQKETLIRQVSE 25 (62)
T ss_dssp EEEESCCCHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHH
Confidence 455667788888887776643
No 159
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=20.30 E-value=39 Score=17.57 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.9
Q ss_pred cCcccCCCChHHHhhHhhhhhe
Q psy719 17 RVSILVQCGSKKMGIVAKHVTC 38 (45)
Q Consensus 17 ~V~ilk~L~~~~l~kiad~l~~ 38 (45)
+|.++++.++.++.+|++++..
T Consensus 4 ~I~l~~Grs~e~k~~L~~~it~ 25 (136)
T 3mlc_A 4 RIDLTSDRSREQRRAIADAVHD 25 (136)
T ss_dssp EEEEETTSCSHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHH
Confidence 4677888999999999888754
No 160
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=20.05 E-value=69 Score=16.37 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=13.9
Q ss_pred cCCCChHHHhhHhhhhh
Q psy719 21 LVQCGSKKMGIVAKHVT 37 (45)
Q Consensus 21 lk~L~~~~l~kiad~l~ 37 (45)
|+.|++.+|..|++...
T Consensus 6 L~kLSe~eL~eIse~~~ 22 (94)
T 1pu1_A 6 LRKLTEGDLDEISSFLH 22 (94)
T ss_dssp CCCCSHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHH
Confidence 67899999999987653
Done!