RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy719
         (45 letters)



>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
          HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
          4avb_A* 4avc_A*
          Length = 333

 Score = 25.8 bits (56), Expect = 0.43
 Identities = 7/45 (15%), Positives = 15/45 (33%)

Query: 1  MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
          M           E L+ + +   C ++ +  +A  V       G+
Sbjct: 1  MDGIAELTGARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQ 45


>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
          potassium channel; dimer helical bundle beta barrel
          core with cyclic AMP bound; HET: CMP; 1.70A
          {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A*
          2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
          Length = 138

 Score = 23.8 bits (52), Expect = 2.1
 Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 5  IRKRKLYE--EFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
          +R+       + ++ V +  + G   +  + + +    V  G 
Sbjct: 1  VRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 43


>2z69_A DNR protein; beta barrel, dimerization helix, transcription
          regulator; 2.10A {Pseudomonas aeruginosa}
          Length = 154

 Score = 23.4 bits (51), Expect = 3.0
 Identities = 5/44 (11%), Positives = 18/44 (40%)

Query: 2  GSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
          GS +  ++++++ L    +       ++  +        ++KG 
Sbjct: 1  GSHMEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGA 44


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 648,083
Number of extensions: 22667
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 3
Length of query: 45
Length of database: 6,701,793
Length adjustment: 18
Effective length of query: 27
Effective length of database: 6,199,215
Effective search space: 167378805
Effective search space used: 167378805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)