RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy719
         (45 letters)



>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase
          A {Cow (Bos taurus) [TaxId: 9913]}
          Length = 132

 Score = 23.6 bits (50), Expect = 1.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
          EEFLS+VSIL      +   VA  +     E G+
Sbjct: 1  EEFLSKVSILESLDKWERLTVADALEPVQFEDGQ 34


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 22.4 bits (47), Expect = 3.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 8   RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEK 43
           R +Y EF  R SIL      +  +  K V+  ++  
Sbjct: 662 RLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAG 697


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 22.0 bits (46), Expect = 4.4
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 8   RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEK 43
           R  Y  F +R  +L +         AK  T  ++++
Sbjct: 619 RIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQ 654


>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium
          loti [TaxId: 381]}
          Length = 133

 Score = 20.9 bits (43), Expect = 8.6
 Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 5  IRKRKLYE--EFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
          +R+       + ++ V +  + G   +  + + +    V  G 
Sbjct: 1  VRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 157,429
Number of extensions: 4311
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 4
Length of query: 45
Length of database: 2,407,596
Length adjustment: 17
Effective length of query: 28
Effective length of database: 2,174,186
Effective search space: 60877208
Effective search space used: 60877208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)