BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7191
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase
Rsmh From E.Coli
Length = 347
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 49 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 105
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 106 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 164
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 165 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 223
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 224 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 252
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 253 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 290
>pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8.
pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8
Length = 285
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 125/259 (48%), Gaps = 40/259 (15%)
Query: 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL 149
+D T G H R ILE G +VI LD+D E+ +AK L + P L V G F L L
Sbjct: 27 VDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGL--HLPGLTVVQGNFRHLKRHL 82
Query: 150 KNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEV 208
+ +DGI+ D+G+S + +RGF LDMRM EG T +V++ +
Sbjct: 83 AALG--VERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLE 140
Query: 209 SLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTES 268
+LA++L+ GEE ++ +IARAI+ R +E T L E+V R + ++RA
Sbjct: 141 ALARLLRELGEEPQAYRIARAIVAAREK-APIETTTQLAEIV----RKAVGFRRAG---- 191
Query: 269 LQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEG 328
H A+K + LR +VN+ELN L + A + L P G
Sbjct: 192 ------------------------HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGG 227
Query: 329 LLLTKCNSIVEDKIVKRHL 347
L+ +ED++VKR L
Sbjct: 228 RLVVIAFHSLEDRVVKRFL 246
>pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
Length = 301
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 38/264 (14%)
Query: 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAK-TLAANDPRLVPVYGKFS 143
D+ ++D T G+G H+R ILE+ ++I +D D E A+ L R+ +
Sbjct: 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR 85
Query: 144 DLPNILKNMNNNFNSIDGIIMDVGISDSQ-ANSTRGFKPDSNSLLDMRMSQEG-ITGYQV 201
+ +LK + +DGI+ D+G+S Q RGF + LD R E +T +V
Sbjct: 86 EADFLLKTLG--IEKVDGILXDLGVSTYQLKGENRGFTFEREEPLDXRXDLESEVTAQKV 143
Query: 202 LSAIDEVSLAKILKTYGEEKR-SRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTW 260
L+ + E LA+I+ YGEEKR +R+IAR I+E R L T DL + V + PS
Sbjct: 144 LNELPEEELARIIFEYGEEKRFARRIARKIVENR----PLNTTLDLVKAVRE-ALPSYEI 198
Query: 261 KRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIA 320
+R R H A K + +R +VN EL L + A
Sbjct: 199 RRRKR---------------------------HFATKTFQAIRIYVNRELENLKEFLKKA 231
Query: 321 EKYLKPEGLLLTKCNSIVEDKIVK 344
E L P G ++ +ED+IVK
Sbjct: 232 EDLLNPGGRIVVISFHSLEDRIVK 255
>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 275
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 80 LNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFE-----KAKTLAANDPR 134
L+ +T+ + T+ ++ G VK ++ K+S++ + +L P
Sbjct: 140 LDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPA 199
Query: 135 LVPV------------YGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPD 182
+ PV YGK + N + +IDG+ M VG + RG +P
Sbjct: 200 IDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPG 259
Query: 183 SNSLL-DMRMSQEG 195
+ +L ++R + EG
Sbjct: 260 TKQILRELRKNLEG 273
>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 281
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 80 LNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFE-----KAKTLAANDPR 134
L+ +T+ + T+ ++ G VK ++ K+S++ + +L P
Sbjct: 146 LDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPA 205
Query: 135 LVPV------------YGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPD 182
+ PV YGK + N + +IDG+ M VG + RG +P
Sbjct: 206 IDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPG 265
Query: 183 SNSLL-DMRMSQEG 195
+ +L ++R + EG
Sbjct: 266 TKQILRELRKNLEG 279
>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|B Chain B, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|C Chain C, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|D Chain D, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3SEF|A Chain A, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|B Chain B, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|C Chain C, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|D Chain D, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
Length = 302
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 80 LNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFE-----KAKTLAANDPR 134
L+ +T+ + T+ ++ G VK ++ K+S++ + +L P
Sbjct: 167 LDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPA 226
Query: 135 LVPV------------YGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPD 182
+ PV YGK + N + +IDG+ M VG + RG +P
Sbjct: 227 IDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPG 286
Query: 183 SNSLL-DMRMSQEG 195
+ +L ++R + EG
Sbjct: 287 TKQILRELRKNLEG 300
>pdb|3PG8|A Chain A, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
pdb|3PG8|B Chain B, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
Length = 272
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 104 LENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP 146
+ N GN K+I +R +FEKA T D VP+ K S LP
Sbjct: 158 IANSGNTKIILCERGIRTFEKA-TRNTLDISAVPIIRKESHLP 199
>pdb|3MQ2|A Chain A, Crystal Structure Of 16s Rrna Methyltranferase Kamb
pdb|3MQ2|B Chain B, Crystal Structure Of 16s Rrna Methyltranferase Kamb
Length = 218
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 80 LNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEK 124
L DDV ++D+ GDG H + + V+ LD DK EK
Sbjct: 23 LRSQYDDV-VLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEK 66
>pdb|1VR6|A Chain A, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|B Chain B, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|C Chain C, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|D Chain D, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
Length = 350
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 104 LENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP 146
+ N GN K+I +R +FEKA T D VP+ K S LP
Sbjct: 236 IANSGNTKIILCERGIRTFEKA-TRNTLDISAVPIIRKESHLP 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,446,030
Number of Sequences: 62578
Number of extensions: 455618
Number of successful extensions: 1320
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 23
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)