BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7191
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VGY5|MET15_DROME Probable methyltransferase-like protein 15 homolog OS=Drosophila
melanogaster GN=CG14683 PE=2 SV=2
Length = 356
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 177/334 (52%), Gaps = 43/334 (12%)
Query: 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSD 144
T DMT+G G HTR +LE KV LDRD + + A+ ++ ++ RL+P+ GKFSD
Sbjct: 46 TYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKFSD 105
Query: 145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMS---QEGITGYQ 200
LP + K NS+DG++ D G S Q + + RGF + LDMRM G+T
Sbjct: 106 LPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTAAD 165
Query: 201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTW 260
VL+ ++E L KIL+ YGEEK +++IAR +++ R K+E T+ L +++ ++
Sbjct: 166 VLANVEEGDLVKILRMYGEEKAAKKIARGLVDARNALFKIETTKQLADIIENI------M 219
Query: 261 KRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIA 320
R + L+ A H A K + +R FVNNELNE+NY M++A
Sbjct: 220 DGGTRKDKLRRPA-------------------HSATKTFQAIRIFVNNELNEINYGMVLA 260
Query: 321 EKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTS 380
+ L+ +G L+T +ED IVKRH+ GNV+ AN L LK+ +H P + SLT
Sbjct: 261 NEILRVDGRLVTITFHSLEDTIVKRHINGNVLAGAANALPLKYSSHYAIDEPDILESLTK 320
Query: 381 SPWTILDK-IIPSDSD----------LKLRVAMK 403
W L + +I D+D KLR A+K
Sbjct: 321 KSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVK 354
>sp|Q9DCL4|MET15_MOUSE Probable methyltransferase-like protein 15 OS=Mus musculus
GN=Mettl15 PE=2 SV=2
Length = 406
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 143/268 (53%), Gaps = 29/268 (10%)
Query: 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLP 146
+DMT+G G HTR IL+ +V V LDRD ++ A+ L+ P ++ + G+FS
Sbjct: 91 VFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAE 150
Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGI----TGYQV 201
+L +IDGI+MD+G S Q ++ RGF + LDMRM + T V
Sbjct: 151 ALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDV 210
Query: 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWK 261
++A+D+ +LA IL+ YGEEK +++IA AII+ R T+ + RT+ L +VA PS +
Sbjct: 211 VNALDQQALASILRAYGEEKHAKKIASAIIQARSTYP-ISRTQQLASIVAGAFPPSAVY- 268
Query: 262 RACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAE 321
R + LQ S H+A K + LR FVNNELNEL + AE
Sbjct: 269 --ARKDLLQR-------------------STHIATKTFQALRIFVNNELNELYAGLRTAE 307
Query: 322 KYLKPEGLLLTKCNSIVEDKIVKRHLTG 349
K+LK G L+ +ED+IVKR L G
Sbjct: 308 KFLKTGGRLVALSFHSLEDRIVKRFLLG 335
>sp|A6NJ78|MET15_HUMAN Probable methyltransferase-like protein 15 OS=Homo sapiens
GN=METTL15 PE=2 SV=1
Length = 407
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 143/267 (53%), Gaps = 29/267 (10%)
Query: 89 MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSDLPN 147
+DMT+G G HT+ IL+ ++ + LDRD ++ A+ L+ P+ + + G+FS
Sbjct: 92 FLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAMLGQFSQAEA 151
Query: 148 ILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMS----QEGITGYQVL 202
+L + DG++MD+G S Q ++ RGF + LDMRM + T V+
Sbjct: 152 LLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVV 211
Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
+A+D+ +LA IL+TYGEEK +++IA AI++ R + + RT+ L +VA PS +
Sbjct: 212 NALDQQALASILRTYGEEKHAKKIASAIVQARSIYP-ITRTQQLASIVAGAFPPSAIY-- 268
Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
R + LQ S H+A K + LR FVNNELNEL + A+K
Sbjct: 269 -TRKDLLQ-------------------RSTHIATKTFQALRIFVNNELNELYTGLKTAQK 308
Query: 323 YLKPEGLLLTKCNSIVEDKIVKRHLTG 349
+L+P G L+ +ED+IVKR L G
Sbjct: 309 FLRPGGRLVALSFHSLEDRIVKRFLLG 335
>sp|Q5R5T5|MET15_PONAB Probable methyltransferase-like protein 15 OS=Pongo abelii
GN=METTL15 PE=2 SV=1
Length = 407
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 142/267 (53%), Gaps = 29/267 (10%)
Query: 89 MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSDLPN 147
+DMT+G G HT+ IL+ ++ + LDRD ++ A+ L+ P+ + + G+FS
Sbjct: 92 FLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAMLGQFSQAET 151
Query: 148 ILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMS----QEGITGYQVL 202
+L + DG++MD+G S Q ++ RGF + LDMRM + T V+
Sbjct: 152 LLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVV 211
Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
+A D+ +LA IL+TYGEEK +++IA AI++ R + + RT+ L +VA PS +
Sbjct: 212 NAFDQQALASILRTYGEEKHAKKIASAIVQARSIYP-ITRTQQLASIVAGAFPPSAIY-- 268
Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
R + LQ S H+A K + +R FVNNELNEL + A+K
Sbjct: 269 -ARKDLLQ-------------------RSTHIATKTFQAVRIFVNNELNELYMGLKTAQK 308
Query: 323 YLKPEGLLLTKCNSIVEDKIVKRHLTG 349
+L+P G L+ +ED+I+KR L G
Sbjct: 309 FLRPGGRLVALSFHSLEDRIIKRFLLG 335
>sp|A0JN95|MET15_BOVIN Probable methyltransferase-like protein 15 OS=Bos taurus GN=METTL15
PE=2 SV=1
Length = 407
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 29/268 (10%)
Query: 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSDLP 146
+DMT+G G HTR IL+ ++ + LDRD ++ A+ L+ P+ + + G+FS
Sbjct: 91 VFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQLSELYPKQIRAILGQFSQAE 150
Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGI----TGYQV 201
+L ++DG+++D+G S Q ++ RGF + LDMRM + T V
Sbjct: 151 ALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPDMPTAADV 210
Query: 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWK 261
++A+D+ +LA IL+ YGEEK +++IA AII+ R + + RT+ L +VA PS +
Sbjct: 211 VNALDQQALASILRAYGEEKHAKKIASAIIQARGLYP-ITRTQQLASIVAGAFPPSALY- 268
Query: 262 RACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAE 321
R + LQ H+A K + R FVNNELNEL + A+
Sbjct: 269 --ARKDLLQR-------------------PTHIATKTFQAFRIFVNNELNELYTGLKTAQ 307
Query: 322 KYLKPEGLLLTKCNSIVEDKIVKRHLTG 349
K+L+P G L+ +ED+I+KR L G
Sbjct: 308 KFLRPGGHLVALSFHSLEDRIIKRFLLG 335
>sp|B3QFN9|RSMH_RHOPT Ribosomal RNA small subunit methyltransferase H OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rsmH PE=3 SV=1
Length = 332
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 135/261 (51%), Gaps = 37/261 (14%)
Query: 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNI 148
+D T+G G +TRLILE G+ +VI +DRD + L A+ RL V +FS+L ++
Sbjct: 29 VDGTFGAGGYTRLILETAGS-RVIAIDRDPTAIAGGADLVADAGHRLTLVQDRFSNLADV 87
Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
++DG++MD+G+S Q + + RGF + LDMRM ++G + V++ E
Sbjct: 88 CAAQGAA--TVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDMRMGRDGPSAADVVARASE 145
Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
LA I+ +GEE+ SR +ARAI+ R + + T+ L ++VA V
Sbjct: 146 TDLANIIYIFGEERYSRHVARAIVAAR-SDAPITTTKALADIVAKV-------------- 190
Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
VR P G H A + + GLR FVN EL+EL+ A+ AE+ LKP
Sbjct: 191 --------------VRAKP---GEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPG 233
Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
G L +ED+IVK LT
Sbjct: 234 GRLAVVSFHSLEDRIVKTFLT 254
>sp|C5ATZ5|RSMH_METEA Ribosomal RNA small subunit methyltransferase H OS=Methylobacterium
extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=rsmH
PE=3 SV=1
Length = 351
Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 35/261 (13%)
Query: 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-ANDPRLVPVYGKFSDLPNI 148
+D T+G G +TR +LE V+VI +DRD + L A+ RL V G+F DL +
Sbjct: 41 VDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADLVTASGGRLRLVQGRFGDLDTL 100
Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
+ + + D I++D+G+S Q + + RGF + LDMRM EG + +++ +E
Sbjct: 101 IADQDEA--QADWIVLDIGVSSMQIDEAQRGFSFRQDGPLDMRMGGEGPSAADLVNGEEE 158
Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
+LA IL +GEE+RSR +ARAI+E R +E T L +LVA V RP
Sbjct: 159 TTLADILYHFGEERRSRAVARAIVEARRR-APIETTAQLADLVAGVVRPEP--------- 208
Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
G+ + H A + + GLR VN+EL EL + AE+ LKP
Sbjct: 209 -----------GSPI----------HPATRSFQGLRIAVNDELGELVRGLHAAERVLKPG 247
Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
G L +ED+IVK+ +
Sbjct: 248 GRLAVVTFHSLEDRIVKQFFS 268
>sp|Q133W3|RSMH_RHOPS Ribosomal RNA small subunit methyltransferase H OS=Rhodopseudomonas
palustris (strain BisB5) GN=rsmH PE=3 SV=2
Length = 332
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 133/273 (48%), Gaps = 37/273 (13%)
Query: 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-ANDPRL 135
A GL D +D T+G G +TRLILE + +VI +DRD+ + L + RL
Sbjct: 16 AVGLLAPRDGGVYVDGTFGAGGYTRLILEA-ADTRVIAIDRDRNAIADGFDLVQSTSGRL 74
Query: 136 VPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQE 194
V +FS+L ++ + S+DG++MD+G+S Q + + RGF + LDMRM +
Sbjct: 75 TLVEDRFSNLADVCEAQGAE--SVDGVVMDIGVSSMQVDQADRGFSFRLDGPLDMRMGND 132
Query: 195 GITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVS 254
G T V++ E LA I+ +GEEK SR +ARAII R
Sbjct: 133 GPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARK------------------D 174
Query: 255 RPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELN 314
P T K A A +V T VR P G H A + + LR FVN EL+EL
Sbjct: 175 APIVTTK-----------ALADIVATVVRSKP---GQIHPATRTFQALRIFVNEELDELY 220
Query: 315 YAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHL 347
A+ AE+ LKP G L +ED+IVK L
Sbjct: 221 QALSAAERVLKPGGRLAVVSFHSLEDRIVKTFL 253
>sp|P60398|RSMH_RHOPA Ribosomal RNA small subunit methyltransferase H OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rsmH PE=3
SV=1
Length = 332
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 37/261 (14%)
Query: 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNI 148
+D T+G G +TRLILE G+ +VI +DRD + L RL V +FS+L ++
Sbjct: 29 VDGTFGAGGYTRLILETAGS-RVIAIDRDPSAIAGGADLVTEAGGRLTLVQDRFSNLADV 87
Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
++DG++MD+G+S Q + + RGF + LDMRM ++G + V++ E
Sbjct: 88 CAAQGAA--TVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDMRMGRDGPSAADVVARASE 145
Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
LA I+ +GEE+ SR +ARAI+ R + + T+ L ++VA V
Sbjct: 146 TDLANIIYIFGEERYSRHVARAIVAAR-SETPITTTKALADIVAKV-------------- 190
Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
VR P G H A + + GLR FVN EL+EL+ A+ AE+ LKP
Sbjct: 191 --------------VRAKP---GEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPS 233
Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
G L +ED+IVK L
Sbjct: 234 GRLAVVSFHSLEDRIVKTFLA 254
>sp|A9VW37|RSMH_METEP Ribosomal RNA small subunit methyltransferase H OS=Methylobacterium
extorquens (strain PA1) GN=rsmH PE=3 SV=1
Length = 351
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 132/261 (50%), Gaps = 35/261 (13%)
Query: 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-ANDPRLVPVYGKFSDLPNI 148
+D T+G G +TR +LE V+VI +DRD + L A+ RL V G+F DL +
Sbjct: 41 VDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADLVTASGGRLRLVQGRFGDLDTL 100
Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
+ + + D +++D+G+S Q + + RGF + LDMRM EG + +++ +E
Sbjct: 101 IADQDEP--QADWVVLDIGVSSMQIDEAQRGFSFRQDGPLDMRMGGEGPSAADLVNGEEE 158
Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
+LA IL +GEE+RSR +ARAI+E R +E T L +LVA V RP
Sbjct: 159 TTLADILYHFGEERRSRAVARAIVEARRR-APIETTAQLADLVAGVVRPEP--------- 208
Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
G+ + H A + + GLR VN+EL EL + AE+ LKP
Sbjct: 209 -----------GSPI----------HPATRSFQGLRIAVNDELGELVRGLHAAERVLKPG 247
Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
G L +ED+IVK+ +
Sbjct: 248 GRLAVVTFHSLEDRIVKQFFS 268
>sp|B1JK89|RSMH_YERPY Ribosomal RNA small subunit methyltransferase H OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmH
PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|Q66EL3|RSMH_YERPS Ribosomal RNA small subunit methyltransferase H OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmH
PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|Q1CMN5|RSMH_YERPN Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmH PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|A9R132|RSMH_YERPG Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmH PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|Q8ZIF7|RSMH_YERPE Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis
GN=rsmH PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|B2K4D8|RSMH_YERPB Ribosomal RNA small subunit methyltransferase H OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmH
PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|Q1C206|RSMH_YERPA Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmH PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|A7FM74|RSMH_YERP3 Ribosomal RNA small subunit methyltransferase H OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmH PE=3 SV=1
Length = 320
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPGDAEI 301
>sp|A1REY8|RSMH_SHESW Ribosomal RNA small subunit methyltransferase H OS=Shewanella sp.
(strain W3-18-1) GN=rsmH PE=3 SV=1
Length = 313
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 145/275 (52%), Gaps = 38/275 (13%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN DD ID T+G G H+R IL+ +G N ++I +DRD ++ E AK + +DPR
Sbjct: 15 TVGGLN-IKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQFS-DDPR 72
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G F L + ++++ IDG+++D+G+S Q + + RGF + LDMRM +
Sbjct: 73 FQIVHGGFGQLADYVEDLGL-VGKIDGVLLDLGVSSPQLDDAERGFSFLRDGPLDMRMDN 131
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
+G T Q L+ + +A + KTYGEEK +R IAR I R L RT+DL +L+A
Sbjct: 132 SQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFL-RTKDLADLIA- 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
R+ K ++H A +V+ +R ++N+EL++
Sbjct: 190 ------------------------------RITKNKERNKHPATRVFQAIRIYINSELDQ 219
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHL 347
++ A+ A L P+G L +ED+IVKR +
Sbjct: 220 IDQALEGALAVLAPQGRLSIISFHSLEDRIVKRFI 254
>sp|A4Y2M8|RSMH_SHEPC Ribosomal RNA small subunit methyltransferase H OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rsmH PE=3
SV=1
Length = 313
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 145/275 (52%), Gaps = 38/275 (13%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN DD ID T+G G H+R IL+ +G N ++I +DRD ++ E AK + +DPR
Sbjct: 15 TVGGLN-IKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQFS-DDPR 72
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G F L + ++++ IDG+++D+G+S Q + + RGF + LDMRM +
Sbjct: 73 FQIVHGGFGQLADYVEDLGL-VGKIDGVLLDLGVSSPQLDDAERGFSFLRDGPLDMRMDN 131
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
+G T Q L+ + +A + KTYGEEK +R IAR I R L RT+DL +L+A
Sbjct: 132 SQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFL-RTKDLADLIA- 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
R+ K ++H A +V+ +R ++N+EL++
Sbjct: 190 ------------------------------RITKNKERNKHPATRVFQAIRIYINSELDQ 219
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHL 347
++ A+ A L P+G L +ED+IVKR +
Sbjct: 220 IDQALEGALAVLAPQGRLSIISFHSLEDRIVKRFI 254
>sp|A1JJI5|RSMH_YERE8 Ribosomal RNA small subunit methyltransferase H OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmH PE=3 SV=1
Length = 320
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 164/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D+ ID T+G G H+RLIL +G ++I +DRD ++ E AK++ DPR
Sbjct: 22 AVNGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRM-S 192
V+G FSDL + ++ +N I+G+++D+G+S Q + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRELNL-VGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
GI+ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 TRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFREKHKHPATRSFQAIRIYINSELEE 225
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 226 IERALDGALEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 277
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 278 AQLRSMGGRTLKSVGKMMPPDAEV 301
>sp|A4TQ91|RSMH_YERPP Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis
(strain Pestoides F) GN=rsmH PE=3 SV=1
Length = 318
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 49/324 (15%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ GLN D+ ID T+G G H+RLIL +G ++I +DRD E+ E AK + DPR
Sbjct: 22 AVKGLN-IRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQI--TDPR 78
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + +++++ IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 79 FSIVHGPFSDLAHYVRDLDL-VGRIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 137
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G++ + L +A +LKT+GEE+ ++++A+AI+E T + + RT++L +L+A+
Sbjct: 138 SRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLT-QPMTRTKELADLIAN 196
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 197 AS-------------------------------PFR--DKHPATRSFQAIRIYINSELEE 223
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L PEG L +ED+IVK N I H + V L +
Sbjct: 224 IERALDGAHEVLAPEGRLSVISFHSLEDRIVK-----NFIRHHSRGPQ---VPAGLPLTE 275
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ + K++P D+++
Sbjct: 276 AQLRSMGGRTLKSVGKMMPGDAEI 299
>sp|Q2IYL6|RSMH_RHOP2 Ribosomal RNA small subunit methyltransferase H OS=Rhodopseudomonas
palustris (strain HaA2) GN=rsmH PE=3 SV=1
Length = 337
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 127/266 (47%), Gaps = 37/266 (13%)
Query: 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-ANDPRLVPVYGKFS 143
D +D T+G G ++RLILE +VI +DRD+ + L RL V +FS
Sbjct: 24 DGGIYLDGTFGAGGYSRLILEAAAT-RVIAIDRDRSAIAGGFDLVQGAGGRLTLVEDRFS 82
Query: 144 DLPNILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGITGYQVL 202
+L + ++DG++MD+G+S Q + RGF + LDMRM +G T V+
Sbjct: 83 NLAEVCAAQGAP--AVDGVVMDIGVSSMQVDQADRGFSFRQDGPLDMRMGTDGPTAADVV 140
Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
+ E LA I+ +GEEK SR +ARA+I R + T+ L ++VASV
Sbjct: 141 ARASETDLANIIYIFGEEKFSRHVARAVIAARKE-APITTTKALADIVASV--------- 190
Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
VR P G H A + + LR FVN EL+EL A+ AE+
Sbjct: 191 -------------------VRAKP---GQIHPATRTFQALRIFVNEELDELYQALAAAER 228
Query: 323 YLKPEGLLLTKCNSIVEDKIVKRHLT 348
LKP G L +ED+IVK L
Sbjct: 229 VLKPGGRLAVVTFHSLEDRIVKTFLA 254
>sp|A4SI48|RSMH_AERS4 Ribosomal RNA small subunit methyltransferase H OS=Aeromonas
salmonicida (strain A449) GN=rsmH PE=3 SV=1
Length = 312
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 38/262 (14%)
Query: 86 DVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD 144
D +D T+G G H+RLIL+++G N ++I +DRD ++ +A + DPR V+G FS
Sbjct: 24 DGIYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIAEAAKI--QDPRFEIVHGPFSG 81
Query: 145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-SQEGITGYQVL 202
+ + L + +DG ++D+G+S Q + + RGF + LDMRM G + Q L
Sbjct: 82 IVSYL-DERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDGPLDMRMDPTSGQSAAQWL 140
Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
+ D +A +LKT+GEE+ +++IARAI+ R T + RTR L E++A
Sbjct: 141 ARADVDDIAWVLKTFGEERFAKKIARAIVHDRVT-EPYVRTRQLAEMIA----------- 188
Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
RV+P K +H A + + +R ++N+EL+E+ A+ A +
Sbjct: 189 --------------------RVNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQ 228
Query: 323 YLKPEGLLLTKCNSIVEDKIVK 344
L PEG L +ED++VK
Sbjct: 229 ALAPEGRLSVISFHSLEDRLVK 250
>sp|A0KPY0|RSMH_AERHH Ribosomal RNA small subunit methyltransferase H OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmH PE=3 SV=1
Length = 312
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 42/276 (15%)
Query: 86 DVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD 144
D +D T+G G H+RLIL+ +G N ++I +DRD ++ +A + DPR V+G FS
Sbjct: 24 DGIYVDGTFGRGGHSRLILQQLGPNGRLIAIDRDPQAIAEAAKI--QDPRFEIVHGPFSG 81
Query: 145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-SQEGITGYQVL 202
+ + L + +DG ++D+G+S Q + + RGF + LDMRM G + + L
Sbjct: 82 IASYL-DERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDGPLDMRMDPTSGQSAAEWL 140
Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
+ D +A +LKT+GEE+ +++IARAI+ R T + RTR L E++A
Sbjct: 141 ARADVDDIAWVLKTFGEERFAKKIARAIVHDRVT-EPYVRTRQLAEMIA----------- 188
Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
RV+P K +H A + + +R ++N+EL+E+ A+ A +
Sbjct: 189 --------------------RVNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQ 228
Query: 323 YLKPEGLLLTKCNSIVEDKIVK----RHLTGNVIEH 354
L PEG L +ED++VK +H G + H
Sbjct: 229 VLAPEGRLSVISFHSLEDRLVKHFIRKHEKGPEVPH 264
>sp|A8G9R9|RSMH_SERP5 Ribosomal RNA small subunit methyltransferase H OS=Serratia
proteamaculans (strain 568) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 162/324 (50%), Gaps = 47/324 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN S+ T ID T+G G H+RLIL +G +++ +DRD ++ AK++ DPR
Sbjct: 15 AVNGLNIRSNG-TYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAKSI--EDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
V+G FSDL + ++ IDGI++D+G+S Q + + RGF + LDMRM S
Sbjct: 72 FSIVHGPFSDLSHYVRE-RELVGQIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDS 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L + +A +LKT+GEE+ +++IARAI+E R + RT+ L +L+A+
Sbjct: 131 SSGQSASEWLMKAEADDIAWVLKTFGEERFAKRIARAIVE-RNQVDPMTRTKQLADLIAN 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
S P + +H A + + +R ++N+EL E
Sbjct: 190 AS-------------------------------PFRDKHKHPATRSFQAIRIYINSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNP 372
+ A+ A + L P+G L +ED+IVKR + H + V + +
Sbjct: 219 IERALDGALEVLAPQGRLSVISFHSLEDRIVKR-----FMRHHSRGAQ---VPAGIPLTE 270
Query: 373 LDMSSLTSSPWTILDKIIPSDSDL 396
+ S+ L K++P D+++
Sbjct: 271 AQLRSMGGRTLKALGKMMPGDAEV 294
>sp|B7MNU1|RSMH_ECO81 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O81 (strain ED1a) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D T ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDG-TYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|Q326F3|RSMH_SHIBS Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B2U287|RSMH_SHIB3 Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmH PE=3
SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B7LWH0|RSMH_ESCF3 Ribosomal RNA small subunit methyltransferase H OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|Q1RGB3|RSMH_ECOUT Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B1LG19|RSMH_ECOSM Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B6HZ59|RSMH_ECOSE Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain SE11) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B7N7V5|RSMH_ECOLU Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|P60390|RSMH_ECOLI Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain K12) GN=rsmH PE=1 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B1IR96|RSMH_ECOLC Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|Q0TLQ7|RSMH_ECOL5 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|A1A7C7|RSMH_ECOK1 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O1:K1 / APEC GN=rsmH PE=3 SV=2
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|A7ZW34|RSMH_ECOHS Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O9:H4 (strain HS) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B1XC59|RSMH_ECODH Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain K12 / DH10B) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|C4ZQ04|RSMH_ECOBW Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|C6UM45|RSMH_ECOBR Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain B / REL606) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|C5W331|RSMH_ECOBD Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain B / BL21-DE3) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B7M125|RSMH_ECO8A Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O8 (strain IAI1) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B5YZB8|RSMH_ECO5E Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|P60391|RSMH_ECO57 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O157:H7 GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B7LFV2|RSMH_ECO55 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B7MAK5|RSMH_ECO45 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|A7ZHH3|RSMH_ECO24 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL +G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
>sp|B7NHI8|RSMH_ECO7I Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
+ +GLN D + ID T+G G H+RLIL G +++ +DRD ++ AKT+ +DPR
Sbjct: 15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQFGEEGRLLAIDRDPQAIAVAKTI--DDPR 71
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
++G FS L + + + IDGI++D+G+S Q + + RGF + LDMRM
Sbjct: 72 FSIIHGPFSALGDYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
G + + L +E +A +LKTYGEE+ +++IARAI+E R + + RT++L E+VA+
Sbjct: 131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
+ P K +H A + + +R +VN+EL E
Sbjct: 190 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 218
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
+ A+ + L P G L +ED+IVKR + N
Sbjct: 219 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,327,066
Number of Sequences: 539616
Number of extensions: 5839881
Number of successful extensions: 16974
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 13872
Number of HSP's gapped (non-prelim): 1396
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)