Query psy7191
Match_columns 413
No_of_seqs 171 out of 1403
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 20:30:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0275 Predicted S-adenosylme 100.0 2E-108 4E-113 806.1 25.4 294 66-405 5-313 (314)
2 PF01795 Methyltransf_5: MraW 100.0 1E-106 3E-111 800.0 20.8 293 66-404 2-310 (310)
3 TIGR00006 S-adenosyl-methyltra 100.0 5E-105 1E-109 788.0 30.1 290 66-404 2-305 (305)
4 PRK00050 16S rRNA m(4)C1402 me 100.0 3.2E-98 7E-103 737.6 31.1 280 67-404 2-295 (296)
5 KOG2782|consensus 100.0 4.2E-76 9.2E-81 556.1 11.1 259 64-351 23-285 (303)
6 PF06962 rRNA_methylase: Putat 98.7 1.4E-08 3.1E-13 91.4 4.0 53 111-168 1-56 (140)
7 PRK14903 16S rRNA methyltransf 98.6 2.9E-07 6.3E-12 95.9 10.0 83 83-171 235-320 (431)
8 TIGR00446 nop2p NOL1/NOP2/sun 98.5 3.9E-07 8.4E-12 88.7 8.7 84 79-170 66-152 (264)
9 COG0144 Sun tRNA and rRNA cyto 98.4 7.3E-07 1.6E-11 90.8 9.4 88 79-171 151-242 (355)
10 PRK14902 16S rRNA methyltransf 98.4 9.7E-07 2.1E-11 91.8 9.5 85 79-170 245-332 (444)
11 PRK10901 16S rRNA methyltransf 98.4 1.7E-06 3.6E-11 89.8 10.2 88 77-170 237-325 (427)
12 PF05175 MTS: Methyltransferas 98.4 5.5E-06 1.2E-10 75.3 12.3 75 85-167 31-107 (170)
13 PRK14901 16S rRNA methyltransf 98.4 1.2E-06 2.6E-11 91.0 9.0 90 78-171 246-338 (434)
14 PRK11933 yebU rRNA (cytosine-C 98.4 1.3E-06 2.9E-11 92.2 9.4 83 83-171 111-196 (470)
15 PF09445 Methyltransf_15: RNA 98.3 7.8E-07 1.7E-11 82.0 6.3 134 87-256 1-138 (163)
16 TIGR00563 rsmB ribosomal RNA s 98.3 1.6E-06 3.6E-11 89.7 9.2 90 77-172 231-323 (426)
17 PF12847 Methyltransf_18: Meth 98.3 6E-06 1.3E-10 68.2 9.7 75 85-166 1-78 (112)
18 TIGR00080 pimt protein-L-isoas 98.3 3E-06 6.6E-11 79.5 8.6 91 70-168 63-156 (215)
19 TIGR02469 CbiT precorrin-6Y C5 98.3 4.9E-06 1.1E-10 69.2 8.7 87 75-168 10-98 (124)
20 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 3.6E-06 7.7E-11 83.2 8.3 89 77-171 78-169 (283)
21 TIGR02752 MenG_heptapren 2-hep 98.2 1.9E-05 4.2E-10 73.9 12.7 87 74-168 35-124 (231)
22 PRK14904 16S rRNA methyltransf 98.2 6.7E-06 1.5E-10 85.7 9.8 84 79-171 245-331 (445)
23 PRK13942 protein-L-isoaspartat 98.1 2.5E-05 5.4E-10 73.7 10.4 92 69-168 61-155 (212)
24 TIGR03534 RF_mod_PrmC protein- 98.1 5.9E-05 1.3E-09 71.0 12.6 88 72-169 76-165 (251)
25 smart00650 rADc Ribosomal RNA 98.0 3.4E-05 7.3E-10 69.8 10.2 87 73-169 2-88 (169)
26 PRK13944 protein-L-isoaspartat 98.0 1.7E-05 3.7E-10 74.2 8.6 91 70-168 58-152 (205)
27 PF13847 Methyltransf_31: Meth 98.0 1.6E-05 3.5E-10 70.1 7.8 79 84-168 2-83 (152)
28 PTZ00338 dimethyladenosine tra 98.0 1.9E-05 4.1E-10 78.8 8.8 95 63-169 12-112 (294)
29 PRK00121 trmB tRNA (guanine-N( 98.0 2E-05 4.3E-10 73.8 8.2 89 71-166 28-119 (202)
30 COG2226 UbiE Methylase involve 98.0 3.1E-05 6.8E-10 75.4 9.8 87 74-168 41-129 (238)
31 PRK07402 precorrin-6B methylas 98.0 2.9E-05 6.3E-10 71.7 9.0 74 69-143 21-100 (196)
32 PRK08287 cobalt-precorrin-6Y C 98.0 4.9E-05 1.1E-09 69.5 9.9 87 68-164 11-103 (187)
33 PRK14896 ksgA 16S ribosomal RN 97.9 4.8E-05 1E-09 73.8 9.7 95 63-169 5-102 (258)
34 PF01209 Ubie_methyltran: ubiE 97.9 3.3E-05 7.1E-10 74.5 8.4 108 50-168 16-126 (233)
35 PF13659 Methyltransf_26: Meth 97.9 1.9E-05 4.2E-10 65.7 6.0 80 86-171 1-83 (117)
36 PLN02233 ubiquinone biosynthes 97.9 0.0001 2.3E-09 71.7 12.0 86 77-170 66-157 (261)
37 PRK00377 cbiT cobalt-precorrin 97.9 5.9E-05 1.3E-09 69.9 9.8 92 67-165 19-118 (198)
38 PRK13168 rumA 23S rRNA m(5)U19 97.9 4.5E-05 9.7E-10 79.5 9.8 94 70-169 283-378 (443)
39 PRK08317 hypothetical protein; 97.9 7.5E-05 1.6E-09 68.6 10.0 93 68-168 3-97 (241)
40 PRK00274 ksgA 16S ribosomal RN 97.9 6.4E-05 1.4E-09 73.6 9.9 97 61-168 16-115 (272)
41 TIGR03533 L3_gln_methyl protei 97.9 7.3E-05 1.6E-09 73.8 10.0 89 71-168 107-199 (284)
42 TIGR00755 ksgA dimethyladenosi 97.9 6.5E-05 1.4E-09 72.4 9.4 81 63-146 5-88 (253)
43 PF13649 Methyltransf_25: Meth 97.9 5E-05 1.1E-09 62.6 7.2 69 89-164 1-73 (101)
44 PLN02244 tocopherol O-methyltr 97.9 0.00015 3.2E-09 73.3 12.0 86 71-165 100-193 (340)
45 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 7.8E-05 1.7E-09 68.3 9.1 89 72-168 27-116 (223)
46 PRK04266 fibrillarin; Provisio 97.8 0.00014 2.9E-09 70.0 10.9 93 68-165 53-148 (226)
47 PRK09328 N5-glutamine S-adenos 97.8 0.00013 2.8E-09 69.9 10.5 86 75-169 99-186 (275)
48 PRK11036 putative S-adenosyl-L 97.8 5.9E-05 1.3E-09 72.5 8.0 106 52-167 4-121 (255)
49 PRK00216 ubiE ubiquinone/menaq 97.8 0.00023 5.1E-09 65.9 11.6 92 68-167 35-130 (239)
50 PF01135 PCMT: Protein-L-isoas 97.8 5.5E-05 1.2E-09 72.1 6.7 92 70-170 58-153 (209)
51 PRK13943 protein-L-isoaspartat 97.8 7.5E-05 1.6E-09 75.5 8.0 93 69-169 65-160 (322)
52 COG2242 CobL Precorrin-6B meth 97.7 0.00011 2.3E-09 69.5 7.9 82 76-165 26-109 (187)
53 PRK14967 putative methyltransf 97.7 0.00017 3.8E-09 68.0 9.2 89 71-169 23-112 (223)
54 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00012 2.7E-09 75.9 8.6 95 67-167 103-201 (390)
55 TIGR03704 PrmC_rel_meth putati 97.7 0.00015 3.2E-09 70.5 8.6 93 71-169 72-164 (251)
56 PRK11805 N5-glutamine S-adenos 97.7 0.0002 4.4E-09 71.7 9.6 74 87-168 135-211 (307)
57 PRK14968 putative methyltransf 97.7 0.0003 6.5E-09 63.1 9.5 81 77-168 16-100 (188)
58 TIGR01177 conserved hypothetic 97.6 0.00018 3.9E-09 72.1 8.7 87 72-168 170-258 (329)
59 PRK00312 pcm protein-L-isoaspa 97.6 0.00036 7.7E-09 65.1 10.1 90 69-168 63-154 (212)
60 TIGR00091 tRNA (guanine-N(7)-) 97.6 0.00015 3.2E-09 67.3 7.4 79 85-167 16-96 (194)
61 PRK01683 trans-aconitate 2-met 97.6 0.00026 5.7E-09 67.6 9.0 84 72-167 19-102 (258)
62 PRK14103 trans-aconitate 2-met 97.6 0.00023 4.9E-09 68.4 8.5 87 68-168 13-99 (255)
63 PRK11188 rrmJ 23S rRNA methylt 97.6 0.00036 7.8E-09 66.0 9.5 72 83-165 49-124 (209)
64 TIGR00479 rumA 23S rRNA (uraci 97.6 0.00032 6.9E-09 72.7 9.6 91 71-167 279-371 (431)
65 TIGR00740 methyltransferase, p 97.6 0.00025 5.4E-09 67.3 8.1 73 84-165 52-129 (239)
66 PRK03522 rumB 23S rRNA methylu 97.6 0.00018 3.8E-09 71.9 7.4 85 72-165 161-247 (315)
67 PRK00107 gidB 16S rRNA methylt 97.6 0.00023 4.9E-09 66.7 7.6 72 85-164 45-118 (187)
68 TIGR00536 hemK_fam HemK family 97.6 0.00044 9.5E-09 68.0 9.8 89 72-168 101-192 (284)
69 PRK14966 unknown domain/N5-glu 97.5 0.00028 6E-09 74.0 8.7 79 84-168 250-329 (423)
70 PRK06202 hypothetical protein; 97.5 0.00064 1.4E-08 64.3 10.4 78 83-168 58-139 (232)
71 TIGR00138 gidB 16S rRNA methyl 97.5 0.00032 6.9E-09 65.0 8.1 97 56-165 16-116 (181)
72 PTZ00146 fibrillarin; Provisio 97.5 0.00048 1E-08 69.1 9.8 80 83-166 130-210 (293)
73 PTZ00098 phosphoethanolamine N 97.5 0.00069 1.5E-08 66.0 10.6 83 73-164 41-123 (263)
74 cd02440 AdoMet_MTases S-adenos 97.5 0.00051 1.1E-08 52.9 7.6 75 89-170 2-78 (107)
75 PHA03411 putative methyltransf 97.5 0.001 2.2E-08 66.4 11.3 129 26-169 9-137 (279)
76 PRK15451 tRNA cmo(5)U34 methyl 97.5 0.00041 9E-09 66.6 8.0 76 84-168 55-135 (247)
77 PF02475 Met_10: Met-10+ like- 97.4 0.00056 1.2E-08 65.0 8.4 83 83-173 99-184 (200)
78 KOG1122|consensus 97.4 0.00023 5E-09 74.4 5.9 87 79-171 236-325 (460)
79 TIGR00537 hemK_rel_arch HemK-r 97.4 0.0007 1.5E-08 61.5 8.5 74 84-168 18-92 (179)
80 PLN02336 phosphoethanolamine N 97.4 0.001 2.2E-08 69.4 10.7 84 73-165 255-339 (475)
81 KOG2730|consensus 97.4 0.00015 3.3E-09 70.4 4.2 81 68-150 73-160 (263)
82 TIGR02021 BchM-ChlM magnesium 97.4 0.0007 1.5E-08 63.3 8.5 96 56-164 26-125 (219)
83 PF02390 Methyltransf_4: Putat 97.4 0.0015 3.3E-08 61.4 10.4 92 65-167 3-97 (195)
84 PF01170 UPF0020: Putative RNA 97.4 0.00043 9.3E-09 64.0 6.6 79 83-168 26-116 (179)
85 PRK06922 hypothetical protein; 97.4 0.00052 1.1E-08 75.5 8.1 79 83-166 416-495 (677)
86 PF08704 GCD14: tRNA methyltra 97.4 0.00095 2.1E-08 65.4 9.2 95 75-174 31-129 (247)
87 TIGR03587 Pse_Me-ase pseudamin 97.4 0.0012 2.6E-08 62.3 9.6 77 73-163 34-110 (204)
88 COG4122 Predicted O-methyltran 97.3 0.002 4.4E-08 62.2 11.3 114 55-172 26-146 (219)
89 PLN02781 Probable caffeoyl-CoA 97.3 0.001 2.2E-08 64.0 9.1 98 68-167 51-153 (234)
90 PRK01544 bifunctional N5-gluta 97.3 0.0008 1.7E-08 71.8 9.0 78 86-171 139-219 (506)
91 COG2890 HemK Methylase of poly 97.3 0.00085 1.8E-08 66.5 8.4 88 88-193 113-203 (280)
92 PRK11207 tellurite resistance 97.3 0.0012 2.6E-08 61.5 8.8 81 74-165 20-102 (197)
93 PRK10909 rsmD 16S rRNA m(2)G96 97.2 0.0016 3.6E-08 61.6 9.1 92 70-168 38-131 (199)
94 TIGR00438 rrmJ cell division p 97.2 0.0016 3.4E-08 59.8 8.8 82 74-166 21-106 (188)
95 PRK11873 arsM arsenite S-adeno 97.2 0.0016 3.5E-08 62.9 9.1 77 83-166 75-154 (272)
96 TIGR02085 meth_trns_rumB 23S r 97.2 0.00086 1.9E-08 68.7 7.3 74 84-165 232-307 (374)
97 PF02353 CMAS: Mycolic acid cy 97.1 0.0016 3.4E-08 64.4 8.4 80 72-163 50-132 (273)
98 PRK11088 rrmA 23S rRNA methylt 97.1 0.0024 5.2E-08 62.2 9.2 70 84-163 84-156 (272)
99 PF08241 Methyltransf_11: Meth 97.1 0.0036 7.9E-08 49.1 8.6 67 90-165 1-67 (95)
100 COG2518 Pcm Protein-L-isoaspar 97.1 0.0032 7E-08 60.5 9.7 98 69-177 57-164 (209)
101 TIGR03438 probable methyltrans 97.1 0.0027 5.8E-08 63.1 9.5 67 84-150 62-132 (301)
102 COG4123 Predicted O-methyltran 97.1 0.0017 3.8E-08 63.8 7.7 81 83-168 42-125 (248)
103 COG2265 TrmA SAM-dependent met 97.1 0.0013 2.8E-08 69.2 7.3 89 70-165 279-369 (432)
104 PRK09489 rsmC 16S ribosomal RN 97.1 0.0032 6.9E-08 64.2 9.8 81 77-167 189-270 (342)
105 PRK05785 hypothetical protein; 97.0 0.0024 5.2E-08 61.0 8.2 146 85-254 51-204 (226)
106 PRK04457 spermidine synthase; 97.0 0.0023 5E-08 62.6 8.1 76 85-166 66-144 (262)
107 TIGR00477 tehB tellurite resis 97.0 0.0039 8.5E-08 57.9 9.3 56 72-130 18-73 (195)
108 TIGR02072 BioC biotin biosynth 97.0 0.0036 7.8E-08 57.7 8.9 75 85-168 34-108 (240)
109 PLN02476 O-methyltransferase 97.0 0.0077 1.7E-07 60.1 11.6 97 69-167 99-203 (278)
110 PRK15001 SAM-dependent 23S rib 97.0 0.0045 9.8E-08 64.1 10.3 76 85-168 228-308 (378)
111 PLN03075 nicotianamine synthas 97.0 0.0021 4.5E-08 64.7 7.4 102 57-165 93-202 (296)
112 TIGR00406 prmA ribosomal prote 96.9 0.0046 9.9E-08 61.1 9.5 73 84-166 158-233 (288)
113 TIGR02716 C20_methyl_CrtF C-20 96.9 0.0034 7.3E-08 62.0 8.3 70 73-144 138-210 (306)
114 PRK12335 tellurite resistance 96.9 0.0036 7.8E-08 61.6 8.4 82 73-165 109-191 (287)
115 COG2263 Predicted RNA methylas 96.9 0.0035 7.6E-08 59.7 7.9 84 83-179 43-129 (198)
116 PF05958 tRNA_U5-meth_tr: tRNA 96.9 0.0016 3.5E-08 66.3 6.1 68 71-142 184-253 (352)
117 PLN02585 magnesium protoporphy 96.8 0.0051 1.1E-07 62.2 9.2 81 71-163 128-217 (315)
118 COG2230 Cfa Cyclopropane fatty 96.8 0.0054 1.2E-07 61.4 8.8 71 74-146 62-135 (283)
119 PRK10742 putative methyltransf 96.8 0.0033 7.1E-08 61.9 7.1 85 76-169 78-175 (250)
120 PRK07580 Mg-protoporphyrin IX 96.8 0.008 1.7E-07 55.9 9.4 82 72-165 48-134 (230)
121 PRK00811 spermidine synthase; 96.8 0.0056 1.2E-07 60.5 8.7 76 85-166 76-158 (283)
122 PRK11705 cyclopropane fatty ac 96.7 0.007 1.5E-07 62.5 9.4 76 75-163 158-233 (383)
123 PLN02589 caffeoyl-CoA O-methyl 96.7 0.0084 1.8E-07 58.8 9.0 112 56-167 45-165 (247)
124 PLN02336 phosphoethanolamine N 96.6 0.0086 1.9E-07 62.6 9.4 86 75-168 28-113 (475)
125 PRK10258 biotin biosynthesis p 96.6 0.0098 2.1E-07 56.7 9.0 82 73-167 31-112 (251)
126 COG2519 GCD14 tRNA(1-methylade 96.6 0.0087 1.9E-07 59.1 8.7 133 16-168 37-173 (256)
127 PF03848 TehB: Tellurite resis 96.6 0.0079 1.7E-07 57.0 8.1 68 74-144 20-88 (192)
128 PRK05031 tRNA (uracil-5-)-meth 96.6 0.0081 1.8E-07 61.5 8.8 69 72-144 195-265 (362)
129 PRK00517 prmA ribosomal protei 96.6 0.0088 1.9E-07 57.7 8.4 48 83-131 117-164 (250)
130 smart00828 PKS_MT Methyltransf 96.6 0.0093 2E-07 55.6 8.2 68 88-163 2-72 (224)
131 PF00398 RrnaAD: Ribosomal RNA 96.6 0.008 1.7E-07 58.5 8.0 82 63-147 6-90 (262)
132 PLN02490 MPBQ/MSBQ methyltrans 96.6 0.011 2.3E-07 60.6 9.1 88 71-166 99-186 (340)
133 PRK15068 tRNA mo(5)U34 methylt 96.5 0.008 1.7E-07 60.6 8.1 80 75-164 113-195 (322)
134 COG4106 Tam Trans-aconitate me 96.5 0.0061 1.3E-07 59.4 6.2 64 74-141 20-83 (257)
135 KOG2198|consensus 96.4 0.0068 1.5E-07 62.6 6.8 89 83-171 153-249 (375)
136 PLN02396 hexaprenyldihydroxybe 96.4 0.0098 2.1E-07 60.3 7.6 73 83-164 129-204 (322)
137 TIGR02143 trmA_only tRNA (urac 96.4 0.013 2.8E-07 59.8 8.3 71 70-144 184-256 (353)
138 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.014 3.1E-07 57.4 8.4 100 69-173 30-140 (311)
139 PRK15128 23S rRNA m(5)C1962 me 96.3 0.018 3.8E-07 60.0 9.0 80 85-168 220-303 (396)
140 PF08242 Methyltransf_12: Meth 96.3 0.00044 9.6E-09 56.3 -2.3 71 90-165 1-73 (99)
141 PRK05134 bifunctional 3-demeth 96.3 0.025 5.4E-07 53.1 9.1 89 69-166 33-122 (233)
142 TIGR00095 RNA methyltransferas 96.2 0.024 5.1E-07 53.0 8.8 82 85-170 49-133 (189)
143 TIGR02081 metW methionine bios 96.2 0.015 3.2E-07 53.6 7.1 80 73-166 4-83 (194)
144 TIGR00452 methyltransferase, p 96.1 0.024 5.1E-07 57.4 8.8 81 74-164 111-194 (314)
145 KOG0820|consensus 96.1 0.027 5.8E-07 56.6 8.8 96 61-168 32-133 (315)
146 COG2520 Predicted methyltransf 96.1 0.016 3.5E-07 59.4 7.4 97 70-174 173-272 (341)
147 PHA03412 putative methyltransf 96.1 0.018 3.9E-07 56.6 7.3 115 42-170 7-126 (241)
148 TIGR03439 methyl_EasF probable 96.1 0.025 5.5E-07 57.4 8.6 130 84-220 75-235 (319)
149 PF04445 SAM_MT: Putative SAM- 96.1 0.011 2.4E-07 57.8 5.7 76 83-166 71-159 (234)
150 PF06325 PrmA: Ribosomal prote 96.0 0.015 3.2E-07 58.5 6.6 72 83-167 159-234 (295)
151 COG2264 PrmA Ribosomal protein 95.9 0.013 2.9E-07 59.1 6.0 76 83-166 160-237 (300)
152 PRK11727 23S rRNA mA1618 methy 95.9 0.048 1E-06 55.5 10.0 81 85-168 114-199 (321)
153 PF01596 Methyltransf_3: O-met 95.9 0.022 4.8E-07 54.3 7.0 84 85-170 45-133 (205)
154 PF01728 FtsJ: FtsJ-like methy 95.9 0.0059 1.3E-07 55.5 2.8 72 83-166 21-99 (181)
155 TIGR00478 tly hemolysin TlyA f 95.8 0.053 1.2E-06 52.6 9.3 68 73-144 63-131 (228)
156 PF03291 Pox_MCEL: mRNA cappin 95.8 0.017 3.7E-07 58.9 6.1 69 56-129 37-105 (331)
157 TIGR01444 fkbM_fam methyltrans 95.8 0.025 5.5E-07 48.8 6.4 57 88-144 1-59 (143)
158 KOG3420|consensus 95.8 0.011 2.4E-07 54.7 4.1 104 67-191 30-135 (185)
159 KOG2915|consensus 95.7 0.035 7.5E-07 55.8 7.8 90 73-168 94-187 (314)
160 COG0293 FtsJ 23S rRNA methylas 95.7 0.041 9E-07 52.9 7.8 70 83-163 43-116 (205)
161 TIGR00417 speE spermidine synt 95.7 0.082 1.8E-06 51.7 10.1 76 86-167 73-154 (270)
162 KOG2904|consensus 95.6 0.042 9.2E-07 55.3 7.9 174 51-234 84-302 (328)
163 TIGR02987 met_A_Alw26 type II 95.6 0.025 5.4E-07 60.4 6.5 90 86-177 32-132 (524)
164 TIGR03840 TMPT_Se_Te thiopurin 95.5 0.054 1.2E-06 51.6 7.9 76 68-146 18-107 (213)
165 COG0030 KsgA Dimethyladenosine 95.5 0.083 1.8E-06 52.5 9.4 95 65-168 8-105 (259)
166 PRK04338 N(2),N(2)-dimethylgua 95.5 0.053 1.1E-06 56.3 8.4 75 85-166 57-133 (382)
167 PRK11524 putative methyltransf 95.5 0.027 5.8E-07 55.6 5.9 55 72-130 197-251 (284)
168 PRK11783 rlmL 23S rRNA m(2)G24 95.4 0.063 1.4E-06 59.7 9.2 77 85-168 538-618 (702)
169 PLN02366 spermidine synthase 95.4 0.066 1.4E-06 54.1 8.4 76 85-166 91-173 (308)
170 PRK01581 speE spermidine synth 95.3 0.046 1E-06 56.8 7.4 75 86-166 151-234 (374)
171 PRK13255 thiopurine S-methyltr 95.3 0.094 2E-06 50.2 9.0 74 47-126 3-76 (218)
172 PF05401 NodS: Nodulation prot 95.2 0.09 1.9E-06 50.5 8.1 68 86-163 44-111 (201)
173 KOG2360|consensus 95.1 0.024 5.2E-07 59.0 4.5 83 83-170 211-296 (413)
174 PRK03612 spermidine synthase; 95.1 0.063 1.4E-06 57.7 7.7 76 85-167 297-382 (521)
175 COG2813 RsmC 16S RNA G1207 met 95.0 0.11 2.3E-06 52.7 8.6 78 77-165 151-231 (300)
176 PLN02672 methionine S-methyltr 95.0 0.076 1.6E-06 61.8 8.5 77 86-168 119-213 (1082)
177 COG0220 Predicted S-adenosylme 95.0 0.059 1.3E-06 52.3 6.5 78 87-168 50-129 (227)
178 KOG1663|consensus 94.9 0.15 3.3E-06 50.0 9.0 81 85-167 73-158 (237)
179 KOG1540|consensus 94.9 0.16 3.5E-06 50.8 9.2 162 76-255 92-274 (296)
180 PF08123 DOT1: Histone methyla 94.8 0.1 2.3E-06 49.8 7.6 98 60-165 18-129 (205)
181 PRK01544 bifunctional N5-gluta 94.8 0.064 1.4E-06 57.5 6.8 80 84-168 346-427 (506)
182 smart00138 MeTrc Methyltransfe 94.7 0.15 3.2E-06 50.1 8.5 62 67-128 78-151 (264)
183 PF03602 Cons_hypoth95: Conser 94.6 0.085 1.8E-06 49.3 6.4 82 85-171 42-127 (183)
184 PRK13256 thiopurine S-methyltr 94.5 0.22 4.8E-06 48.4 9.1 82 40-127 2-83 (226)
185 PF00891 Methyltransf_2: O-met 94.4 0.24 5.2E-06 47.0 9.2 62 76-143 92-153 (241)
186 KOG1541|consensus 94.2 0.066 1.4E-06 52.6 4.8 53 72-127 36-90 (270)
187 PF01555 N6_N4_Mtase: DNA meth 94.2 0.089 1.9E-06 48.0 5.5 53 71-127 179-231 (231)
188 KOG3191|consensus 94.2 0.19 4.2E-06 48.1 7.8 77 84-168 42-120 (209)
189 PF13679 Methyltransf_32: Meth 93.8 0.18 3.9E-06 44.6 6.5 48 83-130 23-74 (141)
190 COG1041 Predicted DNA modifica 93.7 0.17 3.7E-06 52.2 7.0 85 74-168 186-274 (347)
191 PF13489 Methyltransf_23: Meth 93.7 0.21 4.5E-06 43.1 6.5 56 67-124 3-59 (161)
192 PLN02823 spermine synthase 93.5 0.26 5.7E-06 50.4 8.0 74 87-166 105-184 (336)
193 PRK11783 rlmL 23S rRNA m(2)G24 93.5 0.21 4.4E-06 55.7 7.7 54 110-168 257-313 (702)
194 COG0116 Predicted N6-adenine-s 93.0 0.2 4.3E-06 52.3 6.2 77 83-168 189-309 (381)
195 PRK04148 hypothetical protein; 92.8 0.41 8.8E-06 43.2 7.1 44 84-128 15-58 (134)
196 TIGR00308 TRM1 tRNA(guanine-26 92.7 0.27 6E-06 51.0 6.8 77 87-170 46-125 (374)
197 PF11599 AviRa: RRNA methyltra 92.7 0.18 3.9E-06 49.3 5.0 55 73-129 40-97 (246)
198 TIGR01983 UbiG ubiquinone bios 92.4 0.39 8.5E-06 44.5 6.8 73 85-165 45-119 (224)
199 COG0742 N6-adenine-specific me 91.9 1.2 2.6E-05 42.4 9.4 96 71-172 28-128 (187)
200 KOG2187|consensus 91.9 0.26 5.5E-06 53.3 5.4 72 70-144 369-442 (534)
201 PF01564 Spermine_synth: Sperm 91.8 0.89 1.9E-05 44.3 8.7 76 87-167 78-159 (246)
202 COG0421 SpeE Spermidine syntha 91.3 1.4 3.1E-05 44.2 9.7 77 83-166 75-157 (282)
203 KOG2361|consensus 91.3 0.99 2.2E-05 44.9 8.4 151 59-218 44-229 (264)
204 PF02254 TrkA_N: TrkA-N domain 91.0 1 2.2E-05 37.5 7.2 66 94-167 4-71 (116)
205 COG2521 Predicted archaeal met 90.7 0.19 4.1E-06 49.9 2.8 75 83-163 132-210 (287)
206 PF07021 MetW: Methionine bios 90.6 0.87 1.9E-05 43.6 7.1 70 83-163 11-80 (193)
207 PRK11760 putative 23S rRNA C24 89.6 1.3 2.8E-05 46.0 7.9 80 73-167 192-279 (357)
208 PF04672 Methyltransf_19: S-ad 89.2 0.84 1.8E-05 45.7 6.1 78 73-151 56-139 (267)
209 PF07279 DUF1442: Protein of u 88.9 6.7 0.00014 38.3 11.7 112 47-168 7-125 (218)
210 PRK13699 putative methylase; P 88.9 0.95 2.1E-05 43.7 6.1 63 65-131 144-207 (227)
211 PF08003 Methyltransf_9: Prote 87.7 2.1 4.5E-05 43.9 7.8 40 84-124 114-153 (315)
212 KOG3010|consensus 87.6 0.66 1.4E-05 46.1 4.1 70 65-143 15-85 (261)
213 COG2227 UbiG 2-polyprenyl-3-me 87.4 1 2.2E-05 44.5 5.2 44 85-130 59-102 (243)
214 PF05724 TPMT: Thiopurine S-me 87.3 2.4 5.2E-05 40.8 7.7 98 70-190 23-134 (218)
215 PF10672 Methyltrans_SAM: S-ad 87.0 1.8 3.9E-05 43.6 6.9 76 85-166 123-203 (286)
216 PF01209 Ubie_methyltran: ubiE 86.8 0.43 9.4E-06 46.2 2.4 49 299-352 123-171 (233)
217 COG1092 Predicted SAM-dependen 86.5 1.9 4.2E-05 45.3 7.1 76 85-165 217-297 (393)
218 COG3963 Phospholipid N-methylt 86.2 3.6 7.7E-05 39.2 7.9 90 73-168 37-127 (194)
219 PF13578 Methyltransf_24: Meth 84.6 0.77 1.7E-05 37.9 2.5 65 96-167 7-78 (106)
220 PF12836 HHH_3: Helix-hairpin- 84.6 0.26 5.6E-06 38.5 -0.3 42 202-249 8-49 (65)
221 PF06962 rRNA_methylase: Putat 82.6 1.4 3E-05 40.2 3.5 37 315-351 73-114 (140)
222 PRK00536 speE spermidine synth 81.3 4.7 0.0001 40.1 7.0 71 83-166 71-147 (262)
223 PRK12939 short chain dehydroge 80.8 13 0.00029 34.2 9.4 84 86-170 7-96 (250)
224 PRK06194 hypothetical protein; 80.3 10 0.00022 36.1 8.8 85 86-171 6-96 (287)
225 PRK07478 short chain dehydroge 80.3 18 0.0004 33.8 10.3 83 86-169 6-94 (254)
226 KOG2899|consensus 79.7 4 8.8E-05 40.9 5.8 47 86-132 59-105 (288)
227 PRK07666 fabG 3-ketoacyl-(acyl 79.6 9.2 0.0002 35.4 8.0 77 93-169 13-95 (239)
228 KOG1540|consensus 79.5 2.6 5.6E-05 42.5 4.4 43 312-354 192-234 (296)
229 COG2226 UbiE Methylase involve 79.2 2.3 4.9E-05 41.9 3.9 46 301-351 128-173 (238)
230 PRK08226 short chain dehydroge 79.1 15 0.00033 34.4 9.4 82 87-169 7-93 (263)
231 PRK07677 short chain dehydroge 79.1 12 0.00026 35.0 8.7 77 92-168 6-88 (252)
232 cd00315 Cyt_C5_DNA_methylase C 79.0 7 0.00015 38.5 7.4 73 88-170 2-74 (275)
233 PRK08251 short chain dehydroge 78.9 12 0.00027 34.6 8.6 79 92-170 7-93 (248)
234 KOG2651|consensus 78.3 3.2 7E-05 43.9 4.9 75 52-127 117-194 (476)
235 PRK07201 short chain dehydroge 77.6 27 0.00058 37.8 11.9 83 86-169 371-459 (657)
236 KOG4589|consensus 76.8 3.3 7.1E-05 40.2 4.1 70 83-163 67-141 (232)
237 PRK08340 glucose-1-dehydrogena 76.7 13 0.00029 35.0 8.3 77 93-169 6-87 (259)
238 PRK06197 short chain dehydroge 76.3 24 0.00052 34.3 10.2 84 86-170 16-107 (306)
239 TIGR00426 competence protein C 75.9 2.3 5E-05 33.2 2.4 42 202-248 10-51 (69)
240 PRK08217 fabG 3-ketoacyl-(acyl 75.7 22 0.00049 32.6 9.4 84 86-170 5-94 (253)
241 PF05185 PRMT5: PRMT5 arginine 75.7 8.4 0.00018 41.1 7.3 70 86-163 187-263 (448)
242 PRK08643 acetoin reductase; Va 75.6 19 0.00042 33.5 9.0 77 92-168 7-89 (256)
243 PRK05867 short chain dehydroge 75.0 14 0.00031 34.6 8.0 83 86-169 9-97 (253)
244 PRK07024 short chain dehydroge 74.9 19 0.00041 33.9 8.8 77 93-169 8-89 (257)
245 PRK06949 short chain dehydroge 74.9 13 0.00029 34.5 7.7 78 93-170 15-98 (258)
246 PRK08945 putative oxoacyl-(acy 74.7 8.7 0.00019 35.8 6.4 79 92-170 17-104 (247)
247 PRK06940 short chain dehydroge 74.4 17 0.00037 35.0 8.5 74 95-169 9-87 (275)
248 PRK07063 short chain dehydroge 74.3 23 0.00049 33.2 9.2 83 86-169 7-97 (260)
249 PF03059 NAS: Nicotianamine sy 74.1 30 0.00065 34.9 10.3 102 57-168 90-202 (276)
250 PRK06198 short chain dehydroge 73.8 19 0.00041 33.6 8.4 84 86-170 6-96 (260)
251 PRK13394 3-hydroxybutyrate deh 73.7 22 0.00049 33.0 8.9 83 86-169 7-95 (262)
252 PF04989 CmcI: Cephalosporin h 73.5 10 0.00022 36.7 6.6 91 71-165 22-118 (206)
253 PRK07097 gluconate 5-dehydroge 73.0 19 0.00042 34.0 8.4 80 90-170 16-99 (265)
254 TIGR01963 PHB_DH 3-hydroxybuty 72.8 28 0.00061 32.1 9.3 78 93-170 7-90 (255)
255 PRK05872 short chain dehydroge 72.8 28 0.0006 33.9 9.6 84 86-170 9-97 (296)
256 COG1555 ComEA DNA uptake prote 72.5 3.7 7.9E-05 37.6 3.2 42 202-249 91-132 (149)
257 PLN02232 ubiquinone biosynthes 72.2 3.7 7.9E-05 37.0 3.1 37 312-349 59-95 (160)
258 PRK06124 gluconate 5-dehydroge 72.2 19 0.00041 33.6 8.0 83 86-169 11-99 (256)
259 PRK06181 short chain dehydroge 71.8 44 0.00095 31.3 10.4 79 92-170 6-90 (263)
260 PF08241 Methyltransf_11: Meth 71.7 2.8 6.1E-05 32.5 2.0 22 311-332 74-95 (95)
261 PRK12429 3-hydroxybutyrate deh 71.5 21 0.00046 33.0 8.1 78 92-169 9-92 (258)
262 PRK12829 short chain dehydroge 71.4 30 0.00065 32.2 9.2 82 86-169 11-97 (264)
263 TIGR00446 nop2p NOL1/NOP2/sun 71.3 7.6 0.00016 38.0 5.3 36 315-350 180-218 (264)
264 PRK05866 short chain dehydroge 71.1 19 0.00041 35.2 8.1 78 92-169 45-128 (293)
265 KOG1499|consensus 71.0 11 0.00024 39.1 6.6 70 85-163 60-132 (346)
266 PRK07890 short chain dehydroge 70.3 29 0.00062 32.3 8.8 78 92-169 10-93 (258)
267 PRK12826 3-ketoacyl-(acyl-carr 69.9 32 0.0007 31.6 8.9 78 92-169 11-94 (251)
268 PRK11188 rrmJ 23S rRNA methylt 69.5 6 0.00013 37.4 4.1 26 313-338 144-169 (209)
269 PRK07814 short chain dehydroge 69.4 24 0.00053 33.3 8.2 78 92-169 15-98 (263)
270 TIGR01934 MenG_MenH_UbiE ubiqu 69.2 5.4 0.00012 36.4 3.6 34 312-345 121-154 (223)
271 PRK08277 D-mannonate oxidoredu 69.2 25 0.00054 33.4 8.2 79 92-170 15-99 (278)
272 PRK08339 short chain dehydroge 69.0 39 0.00085 32.2 9.6 81 86-168 8-95 (263)
273 PRK05876 short chain dehydroge 68.6 54 0.0012 31.6 10.5 83 86-169 6-94 (275)
274 TIGR00438 rrmJ cell division p 68.5 6.9 0.00015 35.8 4.1 25 312-336 124-148 (188)
275 PRK06172 short chain dehydroge 68.3 20 0.00043 33.4 7.3 77 93-169 13-95 (253)
276 PRK07326 short chain dehydroge 68.1 31 0.00067 31.6 8.4 76 93-168 12-92 (237)
277 KOG1500|consensus 68.1 18 0.00038 38.1 7.3 69 85-163 177-248 (517)
278 PRK07523 gluconate 5-dehydroge 67.9 42 0.00091 31.4 9.4 83 86-169 10-98 (255)
279 PF12847 Methyltransf_18: Meth 67.7 4.8 0.0001 32.8 2.6 24 311-334 88-111 (112)
280 PRK07454 short chain dehydroge 67.6 28 0.0006 32.2 8.0 76 93-168 12-93 (241)
281 PRK09072 short chain dehydroge 67.5 26 0.00057 33.0 8.0 78 92-170 10-92 (263)
282 TIGR00537 hemK_rel_arch HemK-r 66.2 11 0.00024 34.1 4.9 41 308-349 114-155 (179)
283 PRK05786 fabG 3-ketoacyl-(acyl 66.1 31 0.00067 31.6 8.0 78 92-169 10-92 (238)
284 PLN02232 ubiquinone biosynthes 65.8 11 0.00024 33.9 4.9 51 113-170 1-56 (160)
285 PF12147 Methyltransf_20: Puta 65.4 18 0.00039 37.1 6.6 83 66-148 116-203 (311)
286 TIGR02469 CbiT precorrin-6Y C5 65.2 3.8 8.1E-05 33.7 1.6 25 311-336 99-123 (124)
287 PRK09291 short chain dehydroge 65.1 45 0.00098 31.0 9.0 75 92-169 7-84 (257)
288 PRK06196 oxidoreductase; Provi 64.3 21 0.00045 35.0 6.8 75 92-169 31-110 (315)
289 PRK05653 fabG 3-ketoacyl-(acyl 64.2 49 0.0011 30.1 8.8 77 92-168 10-92 (246)
290 PLN03209 translocon at the inn 63.9 52 0.0011 36.5 10.3 81 84-169 78-170 (576)
291 PF00145 DNA_methylase: C-5 cy 63.8 10 0.00022 36.6 4.5 70 88-168 2-71 (335)
292 PRK08324 short chain dehydroge 63.8 68 0.0015 35.6 11.4 151 6-170 352-510 (681)
293 PRK11207 tellurite resistance 63.5 7.8 0.00017 36.0 3.5 30 311-340 111-140 (197)
294 PRK07062 short chain dehydroge 63.5 34 0.00073 32.2 7.9 77 92-168 13-97 (265)
295 PRK08263 short chain dehydroge 63.3 39 0.00085 32.2 8.3 76 93-170 9-89 (275)
296 COG4262 Predicted spermidine s 63.2 16 0.00034 38.9 5.9 56 106-167 309-374 (508)
297 PRK12745 3-ketoacyl-(acyl-carr 62.8 37 0.00081 31.5 7.9 79 92-170 7-92 (256)
298 PRK00107 gidB 16S rRNA methylt 62.7 11 0.00023 35.5 4.2 33 311-343 122-154 (187)
299 PRK08213 gluconate 5-dehydroge 62.6 63 0.0014 30.2 9.5 78 92-169 17-100 (259)
300 PRK06114 short chain dehydroge 62.5 50 0.0011 31.0 8.8 83 86-169 8-97 (254)
301 TIGR03206 benzo_BadH 2-hydroxy 62.5 42 0.00091 31.0 8.2 78 93-170 9-92 (250)
302 PRK10538 malonic semialdehyde 62.1 43 0.00093 31.3 8.3 75 93-169 6-85 (248)
303 PRK07109 short chain dehydroge 62.1 37 0.00081 34.0 8.3 79 92-170 13-97 (334)
304 PRK07041 short chain dehydroge 62.0 58 0.0013 29.7 9.0 73 93-169 3-80 (230)
305 PRK08628 short chain dehydroge 62.0 40 0.00087 31.5 8.0 77 92-168 12-93 (258)
306 TIGR00477 tehB tellurite resis 61.6 9.1 0.0002 35.5 3.6 29 311-339 110-138 (195)
307 PF13659 Methyltransf_26: Meth 61.1 6.6 0.00014 32.3 2.3 23 312-334 93-115 (117)
308 TIGR01829 AcAcCoA_reduct aceto 60.9 45 0.00098 30.5 8.0 77 93-169 6-89 (242)
309 PRK05650 short chain dehydroge 60.2 47 0.001 31.4 8.3 77 93-169 6-88 (270)
310 PRK14968 putative methyltransf 60.2 17 0.00037 32.3 5.0 39 311-349 125-163 (188)
311 TIGR03704 PrmC_rel_meth putati 60.1 17 0.00038 35.4 5.4 42 307-349 189-230 (251)
312 PRK05565 fabG 3-ketoacyl-(acyl 59.7 43 0.00092 30.7 7.7 75 95-169 13-94 (247)
313 PRK05717 oxidoreductase; Valid 59.5 67 0.0015 30.0 9.1 82 86-170 10-96 (255)
314 PRK00377 cbiT cobalt-precorrin 59.3 6.2 0.00014 36.5 2.0 38 311-349 122-160 (198)
315 PLN02253 xanthoxin dehydrogena 59.1 45 0.00097 31.7 7.9 78 92-169 23-105 (280)
316 TIGR02415 23BDH acetoin reduct 58.9 52 0.0011 30.5 8.2 75 95-169 8-88 (254)
317 PLN02233 ubiquinone biosynthes 58.7 9.7 0.00021 37.2 3.3 28 312-339 160-187 (261)
318 PRK12384 sorbitol-6-phosphate 58.7 45 0.00097 31.2 7.7 78 93-170 8-93 (259)
319 PRK07576 short chain dehydroge 58.4 45 0.00097 31.7 7.8 76 93-168 15-96 (264)
320 PRK08267 short chain dehydroge 58.2 53 0.0011 30.8 8.2 77 93-170 7-89 (260)
321 PRK07831 short chain dehydroge 57.9 50 0.0011 31.1 8.0 72 98-169 29-108 (262)
322 PRK06500 short chain dehydroge 57.9 55 0.0012 30.1 8.1 78 90-169 9-91 (249)
323 PRK07792 fabG 3-ketoacyl-(acyl 57.9 68 0.0015 31.5 9.2 82 86-169 12-100 (306)
324 PRK12823 benD 1,6-dihydroxycyc 57.9 46 0.00099 31.1 7.7 77 93-169 14-95 (260)
325 PF07091 FmrO: Ribosomal RNA m 57.6 42 0.00092 33.5 7.6 58 73-130 92-150 (251)
326 PRK07102 short chain dehydroge 57.6 43 0.00094 31.0 7.4 74 92-168 6-86 (243)
327 PRK06138 short chain dehydroge 57.6 60 0.0013 30.0 8.3 77 93-169 11-92 (252)
328 PRK05599 hypothetical protein; 57.4 53 0.0011 30.9 8.0 78 92-169 5-88 (246)
329 PRK09242 tropinone reductase; 57.4 55 0.0012 30.6 8.1 78 92-169 14-99 (257)
330 PRK09496 trkA potassium transp 57.4 50 0.0011 34.0 8.5 65 94-164 237-303 (453)
331 COG4798 Predicted methyltransf 57.3 11 0.00023 36.9 3.3 43 75-118 39-82 (238)
332 PRK07774 short chain dehydroge 57.2 79 0.0017 29.2 9.1 78 92-169 11-94 (250)
333 PRK08085 gluconate 5-dehydroge 57.1 63 0.0014 30.2 8.4 78 92-169 14-97 (254)
334 PRK07825 short chain dehydroge 57.0 53 0.0012 31.1 8.0 76 92-170 10-90 (273)
335 KOG1709|consensus 56.5 36 0.00077 33.9 6.7 78 84-167 100-178 (271)
336 PRK06720 hypothetical protein; 56.4 1.2E+02 0.0027 27.6 10.0 81 89-169 18-104 (169)
337 PRK08589 short chain dehydroge 56.0 59 0.0013 31.0 8.2 78 92-169 11-93 (272)
338 PRK06125 short chain dehydroge 55.8 59 0.0013 30.5 8.1 73 92-168 12-91 (259)
339 PRK08278 short chain dehydroge 55.4 59 0.0013 31.1 8.1 83 86-169 6-101 (273)
340 KOG1975|consensus 54.5 13 0.00029 38.7 3.6 46 83-129 115-160 (389)
341 PRK06139 short chain dehydroge 53.6 59 0.0013 32.8 8.1 83 86-169 7-95 (330)
342 PRK05854 short chain dehydroge 53.5 71 0.0015 31.5 8.5 84 86-170 14-105 (313)
343 PF04816 DUF633: Family of unk 53.3 34 0.00073 32.8 6.0 57 89-145 1-61 (205)
344 PRK06914 short chain dehydroge 53.3 69 0.0015 30.3 8.2 78 93-170 9-93 (280)
345 PRK14902 16S rRNA methyltransf 53.3 24 0.00051 37.1 5.4 35 314-349 359-397 (444)
346 PRK06200 2,3-dihydroxy-2,3-dih 53.0 71 0.0015 30.0 8.1 76 92-169 11-91 (263)
347 PRK07231 fabG 3-ketoacyl-(acyl 52.6 76 0.0016 29.2 8.1 77 93-169 11-92 (251)
348 TIGR02752 MenG_heptapren 2-hep 52.3 21 0.00045 33.3 4.4 34 313-346 130-163 (231)
349 PRK06113 7-alpha-hydroxysteroi 51.8 1.2E+02 0.0026 28.3 9.4 78 92-169 16-99 (255)
350 PRK06101 short chain dehydroge 51.5 84 0.0018 29.2 8.3 72 92-169 6-82 (240)
351 COG1189 Predicted rRNA methyla 51.4 30 0.00066 34.4 5.4 46 74-120 68-113 (245)
352 PRK14967 putative methyltransf 51.4 19 0.0004 34.0 3.9 37 311-349 136-174 (223)
353 PF02005 TRM: N2,N2-dimethylgu 51.4 54 0.0012 34.3 7.6 128 87-230 51-189 (377)
354 PRK11805 N5-glutamine S-adenos 51.4 26 0.00057 35.3 5.1 41 307-349 236-276 (307)
355 PF07015 VirC1: VirC1 protein; 51.3 47 0.001 32.8 6.7 79 94-174 10-100 (231)
356 PF08242 Methyltransf_12: Meth 50.7 9.1 0.0002 30.8 1.5 20 311-330 80-99 (99)
357 TIGR03533 L3_gln_methyl protei 50.6 29 0.00063 34.4 5.3 40 308-349 225-264 (284)
358 PRK12481 2-deoxy-D-gluconate 3 50.5 90 0.002 29.4 8.4 81 86-169 8-94 (251)
359 PRK08265 short chain dehydroge 50.3 81 0.0018 29.8 8.1 76 92-169 11-91 (261)
360 PF08660 Alg14: Oligosaccharid 50.3 11 0.00025 34.9 2.2 35 93-127 4-46 (170)
361 PRK06182 short chain dehydroge 50.1 1E+02 0.0023 29.1 8.8 74 92-170 8-86 (273)
362 COG4976 Predicted methyltransf 49.8 13 0.00029 37.2 2.6 58 68-128 109-166 (287)
363 TIGR00138 gidB 16S rRNA methyl 49.4 15 0.00033 34.0 2.9 34 310-343 118-151 (181)
364 COG2242 CobL Precorrin-6B meth 49.1 5.8 0.00012 37.9 0.1 34 303-337 105-140 (187)
365 PRK07424 bifunctional sterol d 48.9 1.4E+02 0.003 31.6 10.2 77 86-169 178-256 (406)
366 PRK04266 fibrillarin; Provisio 48.7 20 0.00043 34.6 3.7 19 314-332 156-174 (226)
367 PRK07074 short chain dehydroge 48.6 1E+02 0.0022 28.7 8.4 77 92-169 7-88 (257)
368 PRK07060 short chain dehydroge 48.5 1.4E+02 0.0031 27.3 9.3 71 92-170 14-89 (245)
369 PRK06079 enoyl-(acyl carrier p 47.8 1.1E+02 0.0025 28.8 8.7 82 86-170 7-95 (252)
370 PRK07453 protochlorophyllide o 47.6 1E+02 0.0023 30.2 8.6 78 92-169 11-94 (322)
371 PRK09328 N5-glutamine S-adenos 47.6 35 0.00075 32.7 5.1 42 307-349 211-252 (275)
372 TIGR03840 TMPT_Se_Te thiopurin 47.6 21 0.00047 34.0 3.7 27 311-337 129-155 (213)
373 PRK07984 enoyl-(acyl carrier p 47.4 90 0.0019 30.0 8.0 80 90-169 9-95 (262)
374 KOG1270|consensus 47.3 34 0.00073 34.7 5.1 42 86-129 90-131 (282)
375 PF13489 Methyltransf_23: Meth 47.2 15 0.00033 31.4 2.4 25 313-337 94-118 (161)
376 COG4076 Predicted RNA methylas 46.6 40 0.00086 33.0 5.2 57 86-144 33-91 (252)
377 COG0500 SmtA SAM-dependent met 46.6 58 0.0013 24.9 5.4 39 89-128 52-91 (257)
378 TIGR03325 BphB_TodD cis-2,3-di 46.3 88 0.0019 29.4 7.6 76 92-169 10-90 (262)
379 PF06859 Bin3: Bicoid-interact 45.8 22 0.00047 31.4 3.1 30 304-333 14-43 (110)
380 PRK07035 short chain dehydroge 45.8 97 0.0021 28.8 7.7 76 93-168 14-95 (252)
381 KOG1271|consensus 45.8 40 0.00086 32.8 5.1 55 87-141 69-126 (227)
382 PTZ00098 phosphoethanolamine N 45.7 24 0.00051 34.5 3.7 25 312-336 134-158 (263)
383 TIGR00091 tRNA (guanine-N(7)-) 45.3 35 0.00077 31.5 4.7 36 314-349 112-147 (194)
384 PF01728 FtsJ: FtsJ-like methy 45.2 40 0.00086 30.5 4.9 33 313-345 118-150 (181)
385 TIGR00406 prmA ribosomal prote 45.0 41 0.00089 33.3 5.3 38 312-349 237-274 (288)
386 PRK08862 short chain dehydroge 45.0 92 0.002 29.3 7.5 77 92-168 10-93 (227)
387 PRK09489 rsmC 16S ribosomal RN 44.8 35 0.00076 35.0 5.0 40 310-349 279-319 (342)
388 PRK06484 short chain dehydroge 44.5 1.3E+02 0.0028 31.6 9.2 81 86-169 269-354 (520)
389 PRK07791 short chain dehydroge 44.3 90 0.002 30.2 7.5 79 91-169 10-103 (286)
390 PRK14904 16S rRNA methyltransf 44.0 33 0.00071 36.2 4.7 36 315-350 358-396 (445)
391 TIGR02716 C20_methyl_CrtF C-20 44.0 26 0.00056 34.6 3.8 26 311-336 231-256 (306)
392 COG0286 HsdM Type I restrictio 43.8 49 0.0011 35.7 6.1 102 69-173 170-279 (489)
393 KOG3339|consensus 43.7 25 0.00055 34.0 3.4 36 92-127 43-85 (211)
394 TIGR02632 RhaD_aldol-ADH rhamn 43.3 1.4E+02 0.0031 33.3 9.8 84 86-170 414-505 (676)
395 TIGR01832 kduD 2-deoxy-D-gluco 43.3 1.1E+02 0.0025 28.1 7.8 76 92-169 10-91 (248)
396 PRK12335 tellurite resistance 43.2 26 0.00057 34.5 3.7 30 311-340 200-229 (287)
397 PRK06180 short chain dehydroge 43.2 1.1E+02 0.0025 29.1 8.0 76 92-169 9-89 (277)
398 KOG2078|consensus 43.2 27 0.00058 37.7 3.8 74 62-141 228-307 (495)
399 PRK07067 sorbitol dehydrogenas 43.1 1.3E+02 0.0029 28.0 8.3 76 92-169 11-91 (257)
400 PRK06057 short chain dehydroge 43.1 1E+02 0.0023 28.8 7.5 79 86-169 7-90 (255)
401 PRK06935 2-deoxy-D-gluconate 3 42.8 1.1E+02 0.0023 28.7 7.6 77 92-169 20-102 (258)
402 PRK07832 short chain dehydroge 42.8 1.7E+02 0.0038 27.7 9.1 78 93-170 6-90 (272)
403 PRK12743 oxidoreductase; Provi 42.7 1.7E+02 0.0037 27.4 9.0 77 93-169 8-91 (256)
404 TIGR00563 rsmB ribosomal RNA s 42.6 37 0.00081 35.5 4.9 36 314-349 348-386 (426)
405 PRK00517 prmA ribosomal protei 42.5 30 0.00064 33.4 3.8 39 311-349 190-228 (250)
406 PRK05855 short chain dehydroge 42.3 1.1E+02 0.0023 32.1 8.2 82 87-169 316-403 (582)
407 TIGR00740 methyltransferase, p 42.3 39 0.00085 32.0 4.6 36 312-347 139-174 (239)
408 PRK11036 putative S-adenosyl-L 42.2 21 0.00046 34.3 2.8 34 314-348 129-162 (255)
409 KOG3115|consensus 42.2 24 0.00052 34.8 3.0 43 87-129 62-104 (249)
410 PRK06841 short chain dehydroge 42.0 1.4E+02 0.0031 27.6 8.2 76 92-169 20-100 (255)
411 PLN02244 tocopherol O-methyltr 42.0 25 0.00054 35.7 3.4 23 314-336 203-225 (340)
412 TIGR01259 comE comEA protein. 41.5 17 0.00037 31.9 1.8 42 201-248 61-102 (120)
413 TIGR03534 RF_mod_PrmC protein- 41.5 56 0.0012 30.6 5.4 42 307-349 190-231 (251)
414 KOG2671|consensus 41.5 18 0.00038 38.1 2.2 38 83-123 206-244 (421)
415 PRK12824 acetoacetyl-CoA reduc 41.3 2.3E+02 0.005 25.8 9.4 75 93-169 8-91 (245)
416 TIGR01289 LPOR light-dependent 41.1 1.5E+02 0.0032 29.3 8.6 77 92-168 8-91 (314)
417 PRK00216 ubiE ubiquinone/menaq 41.0 40 0.00088 31.0 4.4 31 312-342 136-166 (239)
418 PRK10258 biotin biosynthesis p 40.8 27 0.00059 33.2 3.3 25 313-337 119-143 (251)
419 PRK14901 16S rRNA methyltransf 40.8 36 0.00078 35.8 4.4 37 314-350 364-403 (434)
420 PF05148 Methyltransf_8: Hypot 40.8 78 0.0017 31.1 6.3 94 45-166 36-130 (219)
421 PLN00015 protochlorophyllide r 40.6 1.7E+02 0.0038 28.6 9.0 78 93-170 3-87 (308)
422 PF00107 ADH_zinc_N: Zinc-bind 40.1 18 0.00039 30.3 1.7 22 316-337 71-92 (130)
423 PRK06484 short chain dehydroge 40.0 1.7E+02 0.0036 30.8 9.2 82 86-170 5-91 (520)
424 PRK10669 putative cation:proto 39.9 99 0.0022 33.5 7.7 66 94-167 423-490 (558)
425 KOG1208|consensus 39.9 1.7E+02 0.0037 29.8 9.0 81 87-168 38-124 (314)
426 cd01468 trunk_domain trunk dom 39.7 38 0.00082 32.5 4.1 30 307-336 19-50 (239)
427 PRK07856 short chain dehydroge 39.6 1.4E+02 0.003 27.9 7.8 76 86-169 6-86 (252)
428 PRK07402 precorrin-6B methylas 39.5 31 0.00068 31.7 3.4 36 313-349 121-157 (196)
429 PRK07775 short chain dehydroge 39.5 1.6E+02 0.0034 28.1 8.3 79 92-170 15-99 (274)
430 PRK08287 cobalt-precorrin-6Y C 39.4 53 0.0012 29.8 4.8 35 313-349 110-146 (187)
431 smart00828 PKS_MT Methyltransf 39.3 32 0.0007 31.9 3.4 24 313-336 83-106 (224)
432 PRK11933 yebU rRNA (cytosine-C 39.2 27 0.00059 37.6 3.2 41 309-349 216-259 (470)
433 COG1064 AdhP Zn-dependent alco 39.0 1.6E+02 0.0035 30.7 8.7 74 83-167 164-238 (339)
434 PRK08416 7-alpha-hydroxysteroi 38.9 1.9E+02 0.0041 27.2 8.6 84 86-170 8-99 (260)
435 PRK07904 short chain dehydroge 38.5 1.2E+02 0.0025 28.9 7.2 77 92-169 13-98 (253)
436 PF02353 CMAS: Mycolic acid cy 38.4 40 0.00087 33.5 4.1 31 311-341 143-173 (273)
437 PF03853 YjeF_N: YjeF-related 38.4 86 0.0019 28.6 6.0 33 85-117 99-139 (169)
438 PRK09730 putative NAD(P)-bindi 38.4 1.8E+02 0.004 26.6 8.3 77 93-169 7-90 (247)
439 COG0270 Dcm Site-specific DNA 37.7 1.3E+02 0.0028 30.5 7.7 41 87-128 4-44 (328)
440 KOG4300|consensus 37.7 44 0.00095 33.1 4.1 80 86-172 77-159 (252)
441 PRK08703 short chain dehydroge 37.7 92 0.002 28.7 6.2 77 93-169 12-98 (239)
442 PF05971 Methyltransf_10: Prot 37.6 67 0.0015 32.8 5.6 153 87-253 104-273 (299)
443 PRK05993 short chain dehydroge 37.5 2.4E+02 0.0052 26.9 9.2 73 92-169 9-87 (277)
444 COG4123 Predicted O-methyltran 37.5 32 0.00069 34.2 3.2 28 312-339 148-176 (248)
445 PRK11873 arsM arsenite S-adeno 37.5 32 0.0007 33.2 3.2 24 314-337 163-186 (272)
446 TIGR01177 conserved hypothetic 36.9 41 0.00089 33.9 4.0 28 313-340 273-302 (329)
447 PRK06482 short chain dehydroge 36.9 1.9E+02 0.004 27.4 8.3 77 92-170 7-88 (276)
448 PF01269 Fibrillarin: Fibrilla 36.6 1.8E+02 0.0038 28.9 8.1 81 83-167 71-152 (229)
449 PF14350 Beta_protein: Beta pr 36.6 1.7E+02 0.0037 29.6 8.4 74 94-168 76-164 (347)
450 TIGR02072 BioC biotin biosynth 36.6 49 0.0011 30.3 4.2 27 313-339 114-140 (240)
451 KOG1271|consensus 36.5 42 0.0009 32.7 3.7 34 317-350 164-197 (227)
452 PF02086 MethyltransfD12: D12 36.4 50 0.0011 31.2 4.3 55 71-129 7-62 (260)
453 PRK12828 short chain dehydroge 36.1 1E+02 0.0022 27.9 6.1 77 93-170 13-94 (239)
454 PRK07533 enoyl-(acyl carrier p 36.0 1.4E+02 0.0029 28.4 7.2 72 98-169 23-99 (258)
455 PRK04457 spermidine synthase; 35.8 42 0.00091 32.9 3.8 24 314-337 157-180 (262)
456 PRK05693 short chain dehydroge 35.7 1.2E+02 0.0025 28.8 6.7 74 92-170 6-84 (274)
457 PRK09186 flagellin modificatio 35.5 1.7E+02 0.0036 27.1 7.6 77 92-168 9-93 (256)
458 PRK13798 putative OHCU decarbo 35.5 86 0.0019 29.2 5.6 51 199-256 8-58 (166)
459 PRK09496 trkA potassium transp 35.4 1.7E+02 0.0036 30.2 8.2 66 94-166 6-73 (453)
460 TIGR00536 hemK_fam HemK family 35.3 63 0.0014 31.8 4.9 41 307-348 217-257 (284)
461 TIGR00675 dcm DNA-methyltransf 35.0 1.4E+02 0.003 30.1 7.4 69 89-168 1-69 (315)
462 PRK05875 short chain dehydroge 35.0 2E+02 0.0043 27.2 8.1 78 92-169 12-97 (276)
463 cd01478 Sec23-like Sec23-like: 34.9 52 0.0011 32.7 4.2 28 309-336 18-45 (267)
464 PRK08303 short chain dehydroge 34.8 1.3E+02 0.0029 29.7 7.1 80 89-168 10-106 (305)
465 PRK12937 short chain dehydroge 34.6 1.9E+02 0.004 26.5 7.7 80 90-169 8-94 (245)
466 PF12692 Methyltransf_17: S-ad 34.3 53 0.0011 30.8 3.9 38 85-122 28-65 (160)
467 PF02527 GidB: rRNA small subu 34.0 2.2E+02 0.0047 26.8 8.1 67 88-163 51-120 (184)
468 PRK10458 DNA cytosine methylas 33.9 2E+02 0.0043 31.2 8.7 41 87-128 89-129 (467)
469 PLN02896 cinnamyl-alcohol dehy 33.7 2.9E+02 0.0063 27.5 9.4 74 92-169 15-90 (353)
470 PRK00121 trmB tRNA (guanine-N( 33.7 41 0.00088 31.4 3.1 24 313-336 135-158 (202)
471 PRK06953 short chain dehydroge 33.5 2.9E+02 0.0063 25.2 8.7 73 91-169 8-81 (222)
472 PLN02780 ketoreductase/ oxidor 33.1 2.1E+02 0.0046 28.5 8.4 81 86-169 53-143 (320)
473 cd02999 PDI_a_ERp44_like PDIa 33.1 1.3E+02 0.0028 24.8 5.8 46 73-118 6-58 (100)
474 PF09243 Rsm22: Mitochondrial 33.1 1.1E+02 0.0024 30.3 6.2 47 86-132 34-81 (274)
475 PF04811 Sec23_trunk: Sec23/Se 32.9 54 0.0012 31.3 4.0 30 307-336 19-50 (243)
476 PF01234 NNMT_PNMT_TEMT: NNMT/ 32.8 35 0.00077 34.0 2.7 25 310-334 175-199 (256)
477 PRK08063 enoyl-(acyl carrier p 32.7 2.2E+02 0.0047 26.2 7.9 78 92-169 9-93 (250)
478 COG0144 Sun tRNA and rRNA cyto 32.6 43 0.00094 34.5 3.4 42 309-350 262-307 (355)
479 cd02440 AdoMet_MTases S-adenos 32.4 61 0.0013 24.2 3.5 24 310-333 80-103 (107)
480 PRK08159 enoyl-(acyl carrier p 32.0 2.1E+02 0.0046 27.5 7.9 81 90-170 13-100 (272)
481 PF14164 YqzH: YqzH-like prote 32.0 1.1E+02 0.0023 24.8 4.7 44 207-254 7-58 (64)
482 PRK06179 short chain dehydroge 32.0 1.2E+02 0.0026 28.5 6.1 72 92-170 9-85 (270)
483 PLN02396 hexaprenyldihydroxybe 32.0 41 0.00089 34.3 3.1 28 310-337 211-238 (322)
484 PRK07806 short chain dehydroge 31.9 2.3E+02 0.0049 26.1 7.9 77 93-169 12-95 (248)
485 TIGR00197 yjeF_nterm yjeF N-te 31.9 63 0.0014 30.7 4.1 36 84-119 113-156 (205)
486 PF02153 PDH: Prephenate dehyd 31.9 89 0.0019 30.4 5.3 65 102-167 4-79 (258)
487 PRK08575 5-methyltetrahydropte 31.8 40 0.00087 34.2 3.0 44 4-47 132-182 (326)
488 PRK10901 16S rRNA methyltransf 31.7 73 0.0016 33.4 5.0 36 314-349 352-390 (427)
489 PRK08993 2-deoxy-D-gluconate 3 31.6 2.9E+02 0.0062 25.9 8.6 76 92-168 15-95 (253)
490 PRK08219 short chain dehydroge 31.3 2.4E+02 0.0053 25.3 7.8 74 92-169 8-82 (227)
491 PF01739 CheR: CheR methyltran 31.1 51 0.0011 31.3 3.4 61 67-127 10-82 (196)
492 PRK08317 hypothetical protein; 31.0 79 0.0017 28.8 4.6 23 313-335 103-125 (241)
493 PF00107 ADH_zinc_N: Zinc-bind 30.7 2.2E+02 0.0048 23.6 6.9 65 97-167 3-67 (130)
494 PRK06701 short chain dehydroge 30.7 2E+02 0.0044 27.9 7.6 79 92-170 51-136 (290)
495 PRK06603 enoyl-(acyl carrier p 30.7 2.1E+02 0.0046 27.1 7.6 78 92-169 13-97 (260)
496 PRK15451 tRNA cmo(5)U34 methyl 30.4 74 0.0016 30.5 4.4 23 312-334 142-164 (247)
497 TIGR01830 3oxo_ACP_reduc 3-oxo 30.2 2.1E+02 0.0046 25.9 7.2 76 93-168 4-86 (239)
498 PF06080 DUF938: Protein of un 30.1 1.1E+02 0.0023 29.8 5.3 44 84-127 24-67 (204)
499 PRK14103 trans-aconitate 2-met 30.1 50 0.0011 31.6 3.2 24 313-336 105-128 (255)
500 PRK09134 short chain dehydroge 30.0 2.7E+02 0.0059 26.0 8.1 78 92-169 14-98 (258)
No 1
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-108 Score=806.08 Aligned_cols=294 Identities=34% Similarity=0.519 Sum_probs=275.6
Q ss_pred CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCC
Q psy7191 66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFS 143 (413)
Q Consensus 66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs 143 (413)
..|+|||++|++++|. ++|+++|||||||+||||.+||+++|. ++|||+|+||+||+.|++++..|. ||+++|+||+
T Consensus 5 ~~HipVLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 5 FRHIPVLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred CCccchHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 4699999999999998 999999999999999999999999974 889999999999999999998876 9999999999
Q ss_pred ChHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCc
Q psy7191 144 DLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEK 221 (413)
Q Consensus 144 ~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~ 221 (413)
++...+.+.++ ++|||||||||||||||| ++|||||++|||||||||+ +++||+||||+|++++|++||++||||+
T Consensus 84 ~l~~~l~~~~i--~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr 161 (314)
T COG0275 84 NLAEALKELGI--GKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEER 161 (314)
T ss_pred HHHHHHHhcCC--CceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHHHHHHhccHh
Confidence 99999999886 479999999999999999 9999999999999999998 9999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHH
Q psy7191 222 RSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNG 301 (413)
Q Consensus 222 ~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQA 301 (413)
+|++||++||++| +.+||+||.||+++|++++|... ++ +++|||||||||
T Consensus 162 ~arrIA~aIv~~R-~~~pi~tT~eLaeiI~~~~p~~~------~~-----------------------k~~hPAtr~FQA 211 (314)
T COG0275 162 FAKRIARAIVERR-KKKPIETTKELAEIIKSAIPAKE------KR-----------------------KKIHPATRTFQA 211 (314)
T ss_pred hHHHHHHHHHHHh-ccCCCccHHHHHHHHHHhCCchh------cc-----------------------cCCCcchhhhhh
Confidence 9999999999999 89999999999999999999753 22 568999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCC
Q psy7191 302 LRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSS 381 (413)
Q Consensus 302 LRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (413)
|||+||+||++|+.+|..|+++|+|||||+|||||||||||||+||++++..++|..+|++.|++ ..
T Consensus 212 iRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~ff~~~s~~~~p~~lP~~~~~~-------------~~ 278 (314)
T COG0275 212 IRIYVNDELEELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNFFKELSKPGVPKGLPVTEEGP-------------AL 278 (314)
T ss_pred heeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHHHHHhcccCCCCCCCcccccc-------------cc
Confidence 99999999999999999999999999999999999999999999999998877899999876542 12
Q ss_pred Cceeecc--cCCCccce---------eeeeEEeec
Q psy7191 382 PWTILDK--IIPSDSDL---------KLRVAMKKE 405 (413)
Q Consensus 382 ~~~~itk--i~Ps~eEi---------KLRv~~k~~ 405 (413)
.++++|| |+||++|+ ||||++|+.
T Consensus 279 ~~~~itkK~i~ps~~Ei~~NpRsRSAkLRv~ek~~ 313 (314)
T COG0275 279 KFKLITKKPIMPSEEEIEANPRARSAKLRVAEKIE 313 (314)
T ss_pred hhhhccCCCcCCCHHHHHhCcchhhhHHHhhhhhc
Confidence 2688887 99999999 999999874
No 2
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=100.00 E-value=1.4e-106 Score=799.97 Aligned_cols=293 Identities=35% Similarity=0.554 Sum_probs=230.9
Q ss_pred CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191 66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD 144 (413)
Q Consensus 66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~ 144 (413)
..|+|||++||++.|. ++++++|||||||+||||.+||+++|+++|||||+||+|++.|+++++.+. |+.++++||++
T Consensus 2 ~~H~PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 2 FYHIPVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp SS---TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred CceecccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 3699999999999998 999999999999999999999999988999999999999999999988775 99999999999
Q ss_pred hHHHHHhc-CCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCc
Q psy7191 145 LPNILKNM-NNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEK 221 (413)
Q Consensus 145 l~~~L~~~-~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~ 221 (413)
+.+++.+. ++ ..|||||||||||||||| |+|||||+.|||||||||+ +++||++|||+||+++|++||++||||+
T Consensus 81 l~~~l~~~~~~--~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~I~~~yGee~ 158 (310)
T PF01795_consen 81 LDEYLKELNGI--NKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELARIFREYGEEK 158 (310)
T ss_dssp HHHHHHHTTTT--S-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHHHHHHHH--T
T ss_pred HHHHHHHccCC--CccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHHHHHhcCchh
Confidence 99999998 65 479999999999999999 9999999999999999999 8999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHH
Q psy7191 222 RSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNG 301 (413)
Q Consensus 222 ~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQA 301 (413)
+|++||++||++| +.+||+||.||+++|++++|... ++ +++|||||||||
T Consensus 159 ~a~~IA~~Iv~~R-~~~pi~tT~~L~~iI~~~~~~~~------~~-----------------------~~~hpatr~FQA 208 (310)
T PF01795_consen 159 FARRIARAIVEAR-KKKPITTTKELAEIIEKAVPKKR------RR-----------------------RKIHPATRVFQA 208 (310)
T ss_dssp THHHHHHHHHHHH-HHSS--BHHHHHHHHHHHS-HHH------CC------------------------SS-TTHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCccc------cc-----------------------ccCCHHHHHHHH
Confidence 9999999999999 78999999999999999998642 22 467999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccc-cccccchhhhhcccCcCCCCcCCcCCC
Q psy7191 302 LRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIE-HCANDLALKFVNHNLTVNPLDMSSLTS 380 (413)
Q Consensus 302 LRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (413)
|||+||+||++|+.+|+.++++|+|||||+|||||||||||||++|+++... .||+.+|+|.|++ .
T Consensus 209 LRI~VN~EL~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~~~~~~~p~~lp~~~~~~-------------~ 275 (310)
T PF01795_consen 209 LRIAVNDELEELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRELAKSCKCPPGLPVCECGK-------------H 275 (310)
T ss_dssp HHHHHCTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHCCSSC----------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHHhcccCCCccccccccccc-------------c
Confidence 9999999999999999999999999999999999999999999999998876 4788999998876 4
Q ss_pred CCceeecc--cCCCccce---------eeeeEEee
Q psy7191 381 SPWTILDK--IIPSDSDL---------KLRVAMKK 404 (413)
Q Consensus 381 ~~~~~itk--i~Ps~eEi---------KLRv~~k~ 404 (413)
+.|+++|| |+||++|| ||||++|+
T Consensus 276 ~~~~~i~kk~i~ps~~Ei~~NpRsRSAkLRv~ek~ 310 (310)
T PF01795_consen 276 PKFKLITKKPITPSEEEIEENPRSRSAKLRVAEKI 310 (310)
T ss_dssp ---EESESS-B---HHHHHH-GGGTT-EEEEEEE-
T ss_pred cceEEccCCccCCChhhhhcCCchHhhhhheEEeC
Confidence 56999998 99999999 99999985
No 3
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=100.00 E-value=5.4e-105 Score=788.04 Aligned_cols=290 Identities=34% Similarity=0.500 Sum_probs=270.4
Q ss_pred CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191 66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD 144 (413)
Q Consensus 66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~ 144 (413)
..|+|||++|++++|. ++++++|||||||+||||.+||+.+|+|+|||||+||.|++.|+++++.|. |++++++||++
T Consensus 2 ~~H~pVll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 2 FFHQSVLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CCCcchhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3699999999999997 999999999999999999999999877999999999999999999887775 99999999999
Q ss_pred hHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCch
Q psy7191 145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEKR 222 (413)
Q Consensus 145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~~ 222 (413)
+.+++.+.++. .|||||||||||||||| ++|||||+.|||||||||+ +++||++|||+|++++|++||++||||++
T Consensus 81 l~~~l~~~~~~--~vDgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~L~~i~~~yGEe~~ 158 (305)
T TIGR00006 81 FFEHLDELLVT--KIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSQKLSAAEILNTYSEEDLERILKKYGEEKF 158 (305)
T ss_pred HHHHHHhcCCC--cccEEEEeccCCHhhcCCCCCCCccCCCCCcccccCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcch
Confidence 99999888764 69999999999999999 9999999999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHH
Q psy7191 223 SRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGL 302 (413)
Q Consensus 223 a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQAL 302 (413)
|++||++||++| +.+||+||.||+++|++++|... ++ +++||||||||||
T Consensus 159 a~~IA~~Iv~~R-~~~~i~tt~~L~~ii~~~~p~~~------~~-----------------------~~~hpatr~FQAL 208 (305)
T TIGR00006 159 SKRIARAIVERR-KKKPIQTTKELAELISKAVPGFS------KH-----------------------KSIHPATRVFQAI 208 (305)
T ss_pred HHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHcCccc------cc-----------------------cCCCcHHHHHHHH
Confidence 999999999999 78999999999999999998542 21 3469999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCCC
Q psy7191 303 RRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSP 382 (413)
Q Consensus 303 RI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (413)
||+||+||++|+++|+.++++|+|||||+|||||||||||||++|+++...++|+.+|+|.|+ .
T Consensus 209 RI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~----------------~ 272 (305)
T TIGR00006 209 RIYVNDELEELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFFRELSKFPQPPGLPVKETP----------------L 272 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccCCCCCCCccccc----------------c
Confidence 999999999999999999999999999999999999999999999998766667778876442 4
Q ss_pred ceeecc--cCCCccce---------eeeeEEee
Q psy7191 383 WTILDK--IIPSDSDL---------KLRVAMKK 404 (413)
Q Consensus 383 ~~~itk--i~Ps~eEi---------KLRv~~k~ 404 (413)
|+++|| |+||++|| ||||++|+
T Consensus 273 ~~~lt~k~i~ps~~Ei~~NpRsRSAkLRv~~k~ 305 (305)
T TIGR00006 273 YALITKKPITPSEEEIKENPRSRSAKLRVAEKK 305 (305)
T ss_pred eeEccCCCcCCCHHHHHhCccHHhhhheeEEeC
Confidence 889997 99999999 99999984
No 4
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=100.00 E-value=3.2e-98 Score=737.62 Aligned_cols=280 Identities=37% Similarity=0.556 Sum_probs=259.0
Q ss_pred CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCCh
Q psy7191 67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL 145 (413)
Q Consensus 67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l 145 (413)
.|+|||++|+++.|. ++|+++|||||||+||||.+||+.+| +++|||||+||+|++.|+++++..+|+++++++|+++
T Consensus 2 ~H~pVll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l 80 (296)
T PRK00050 2 KHIPVLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNL 80 (296)
T ss_pred CCccccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHH
Confidence 699999999999997 89999999999999999999999995 7999999999999999998876534999999999999
Q ss_pred HHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCchH
Q psy7191 146 PNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEKRS 223 (413)
Q Consensus 146 ~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a 223 (413)
..++.+ ++. .|||||||||||||||| ++|||||.+|||||||||+ +++||+||||+|++++|++||++||||++|
T Consensus 81 ~~~l~~-~~~--~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~i~~~yGee~~a 157 (296)
T PRK00050 81 KEVLAE-GLG--KVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEERFA 157 (296)
T ss_pred HHHHHc-CCC--ccCEEEECCCccccccCCCcCCcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcchH
Confidence 999876 553 69999999999999999 9999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHHH
Q psy7191 224 RQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLR 303 (413)
Q Consensus 224 ~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQALR 303 (413)
++||++||++| +.+||+||.||+++|++++|. ++ +++|||||||||||
T Consensus 158 ~~iA~~Iv~~R-~~~~~~tt~~L~~~i~~~~~~--------~~-----------------------~~~hpatr~FQAlR 205 (296)
T PRK00050 158 RRIARAIVEAR-PKKPITTTGELAEIIKSAVPP--------RR-----------------------KGIHPATRTFQALR 205 (296)
T ss_pred HHHHHHHHHHh-ccCCCCCHHHHHHHHHHHcCc--------cC-----------------------CCCCchHHHHHHHH
Confidence 99999999999 789999999999999999982 11 34699999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCCCc
Q psy7191 304 RFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPW 383 (413)
Q Consensus 304 I~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (413)
|+||+||++|+.+|..++++|+|||||+|||||||||||||+||+++...+ |+ ..+.|
T Consensus 206 I~VN~El~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f~~~~~~~---------~~-------------~~~~~ 263 (296)
T PRK00050 206 IEVNDELEELERALEAALDLLKPGGRLAVISFHSLEDRIVKRFFRELSKGC---------CG-------------NKPKL 263 (296)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccc---------cc-------------cCCce
Confidence 999999999999999999999999999999999999999999999865431 11 14568
Q ss_pred eeecc--cCCCccce---------eeeeEEee
Q psy7191 384 TILDK--IIPSDSDL---------KLRVAMKK 404 (413)
Q Consensus 384 ~~itk--i~Ps~eEi---------KLRv~~k~ 404 (413)
+++|+ |+||++|| ||||++|+
T Consensus 264 ~~~~~k~i~ps~~Ei~~NpRsRSAkLR~~~k~ 295 (296)
T PRK00050 264 KLLTKKPIKPSEEEIAANPRARSAKLRVAERL 295 (296)
T ss_pred EEcCCCCcCCCHHHHHhCcchHhhhheEEEec
Confidence 99998 99999999 99999985
No 5
>KOG2782|consensus
Probab=100.00 E-value=4.2e-76 Score=556.08 Aligned_cols=259 Identities=29% Similarity=0.416 Sum_probs=241.0
Q ss_pred ccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-CCC-CeEEEecC
Q psy7191 64 IYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-NDP-RLVPVYGK 141 (413)
Q Consensus 64 ~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-~~~-rv~~i~~n 141 (413)
.-..|+|||++|+++.|. |.++++|+|||||+||||..||+++|+.++||+|+||.|.+.|.-..+ .|. ++..+.++
T Consensus 23 ~~~~HVPVm~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~ 101 (303)
T KOG2782|consen 23 VPSSHVPVMLDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGN 101 (303)
T ss_pred ccccCCceehhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhh
Confidence 346899999999999997 999999999999999999999999999999999999999999976653 354 88889999
Q ss_pred CCChHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCC
Q psy7191 142 FSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGE 219 (413)
Q Consensus 142 Fs~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGE 219 (413)
|++++.++.+.|+..+.||||||||||||||+| |+||||..+|||||||||+ ...+|.+++|+|+|.||.+|+|.|||
T Consensus 102 Fs~~~~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGFSv~~dGpLDMRMDgg~s~g~~~~~~~~~e~~l~rvlr~yge 181 (303)
T KOG2782|consen 102 FSYIKSLIADTGLLDVGVDGILMDLGCSSMQVDNPERGFSVLQDGPLDMRMDGGASLGAEDIVNSWPESELGRVLRDYGE 181 (303)
T ss_pred hHHHHHHHHHhCCCcCCcceEEeecCccccccCCccccceeeccCCcceeecCCCccceeeeecccchhhHHHHHHHhhh
Confidence 999999999999988999999999999999999 9999999999999999999 78899999999999999999999999
Q ss_pred CchHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHH
Q psy7191 220 EKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVY 299 (413)
Q Consensus 220 E~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~F 299 (413)
|++|+.|++.||++| -...|+||.||+++|+..-|.+ ++..| +.+|.|||+|
T Consensus 182 e~~~~~l~~~iv~ar-~~~~l~st~~l~dli~~~~~~~--------r~~~~-------------------~~~~tatk~f 233 (303)
T KOG2782|consen 182 ESNWYLLQNRIVKAR-LNGGLHSTGELVDLIRGTSPAS--------RGGRQ-------------------GWIKTATKVF 233 (303)
T ss_pred hhHHHHHHhhhHHhh-hccccccchhHHHHhccCCccc--------ccccc-------------------ccccccchhh
Confidence 999999999999999 7789999999999999977654 22222 5569999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcc
Q psy7191 300 NGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNV 351 (413)
Q Consensus 300 QALRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~ 351 (413)
|+|||+|||||++|+..|-.+.+.|.||||+++|||||||||+||++|.++.
T Consensus 234 qg~ri~vnnel~~~~~~~~l~~~vl~~~grl~~isfhSLed~vvkr~~~~i~ 285 (303)
T KOG2782|consen 234 QGLRIAVNNELKTLQNSLYLSFDVLAPGGRLAVISFHSLEDRVVKRTFLDIL 285 (303)
T ss_pred hhHHHHhhhhhhhccCceeccccccCCCccEEEEEhhhHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999854
No 6
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.68 E-value=1.4e-08 Score=91.39 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=43.3
Q ss_pred EEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 111 KVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 111 ~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+|||||+|++|++.|+++++.. .|+++++++|++|+++++. ++||+++|||||
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-----~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-----GPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-------EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-----CCcCEEEEECCc
Confidence 6999999999999999988754 3899999999999999875 369999999999
No 7
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=2.9e-07 Score=95.87 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
+++|..++|+|+|.||.|.++++.. +.++|+|+|+++.+++.++++++..+ ++.+++++...+...+. +.+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~------~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ------DTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh------ccC
Confidence 8889999999999999999999987 46899999999999999988776543 68888888776654432 369
Q ss_pred cEEEEcCCCCcc
Q psy7191 160 DGIIMDVGISDS 171 (413)
Q Consensus 160 DGILfDLGvSS~ 171 (413)
|.||+|..||+.
T Consensus 309 D~Vl~DaPCsg~ 320 (431)
T PRK14903 309 DRILVDAPCTSL 320 (431)
T ss_pred CEEEECCCCCCC
Confidence 999999999854
No 8
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.50 E-value=3.9e-07 Score=88.69 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=67.6
Q ss_pred ccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCC
Q psy7191 79 GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
.|. +++++.++|+++|.||.|..|.+..+ .+.|+|+|+++.+++.++++++.. .++.+++.+...+...
T Consensus 66 ~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------- 137 (264)
T TIGR00446 66 ALE-PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------- 137 (264)
T ss_pred HhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------
Confidence 444 78999999999999999999999885 489999999999999998877654 3788888876544221
Q ss_pred CCCccEEEEcCCCCc
Q psy7191 156 FNSIDGIIMDVGISD 170 (413)
Q Consensus 156 ~~~VDGILfDLGvSS 170 (413)
...+|.||+|..||.
T Consensus 138 ~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 138 VPKFDAILLDAPCSG 152 (264)
T ss_pred ccCCCEEEEcCCCCC
Confidence 135999999999873
No 9
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=7.3e-07 Score=90.82 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=71.4
Q ss_pred ccCCCCCCCEEEEEecCCchhHHHHHHhcCC--CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCC
Q psy7191 79 GLNDSSDDVTMIDMTYGDGNHTRLILENIGN--VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNN 154 (413)
Q Consensus 79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~--g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~ 154 (413)
.|. ++||..++|+|.+.||.|++|++..++ +.|+|+|+|+.-+...++++++.+ ++.+++.+.+.+.......
T Consensus 151 ~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~-- 227 (355)
T COG0144 151 VLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG-- 227 (355)
T ss_pred HcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc--
Confidence 444 999999999999999999999999865 566999999999999888877654 6778888777665544321
Q ss_pred CCCCccEEEEcCCCCcc
Q psy7191 155 NFNSIDGIIMDVGISDS 171 (413)
Q Consensus 155 ~~~~VDGILfDLGvSS~ 171 (413)
..||.||+|-.||+.
T Consensus 228 --~~fD~iLlDaPCSg~ 242 (355)
T COG0144 228 --EKFDRILLDAPCSGT 242 (355)
T ss_pred --CcCcEEEECCCCCCC
Confidence 259999999999864
No 10
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=9.7e-07 Score=91.78 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=69.8
Q ss_pred ccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191 79 GLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
.|. ++++..++|+++|.||.|..+++.. +.++|+|+|+++.+++.++++++..+ ++.++++++.++...+.
T Consensus 245 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~----- 318 (444)
T PRK14902 245 ALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA----- 318 (444)
T ss_pred HhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-----
Confidence 444 7788999999999999999999987 67999999999999999988776543 68999999876533221
Q ss_pred CCCccEEEEcCCCCc
Q psy7191 156 FNSIDGIIMDVGISD 170 (413)
Q Consensus 156 ~~~VDGILfDLGvSS 170 (413)
+.+|.|++|..||.
T Consensus 319 -~~fD~Vl~D~Pcsg 332 (444)
T PRK14902 319 -EKFDKILVDAPCSG 332 (444)
T ss_pred -ccCCEEEEcCCCCC
Confidence 36999999988863
No 11
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.7e-06 Score=89.79 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=71.9
Q ss_pred HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCC
Q psy7191 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
+..|. +++|+.++|+++|.||.|..+++..++++|+|+|+++.+++.++++++..+ .+++++++..++..++.
T Consensus 237 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~----- 310 (427)
T PRK10901 237 ATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD----- 310 (427)
T ss_pred HHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc-----
Confidence 34554 788999999999999999999999877899999999999999988876554 67888888776544332
Q ss_pred CCCccEEEEcCCCCc
Q psy7191 156 FNSIDGIIMDVGISD 170 (413)
Q Consensus 156 ~~~VDGILfDLGvSS 170 (413)
.+.+|.|++|-.||.
T Consensus 311 ~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 311 GQPFDRILLDAPCSA 325 (427)
T ss_pred cCCCCEEEECCCCCc
Confidence 236999999998863
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.37 E-value=5.5e-06 Score=75.29 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=58.9
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
+++.++|..+|.|--+..+++..|+.+|+++|+++.|++.|++..+... .+++++++..+- +...++|.|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~--------~~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA--------LPDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT--------CCTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc--------ccccceeEE
Confidence 6789999999999999999999899899999999999999988765432 488888875431 123579999
Q ss_pred EEcCC
Q psy7191 163 IMDVG 167 (413)
Q Consensus 163 LfDLG 167 (413)
+.|-.
T Consensus 103 v~NPP 107 (170)
T PF05175_consen 103 VSNPP 107 (170)
T ss_dssp EE---
T ss_pred EEccc
Confidence 96655
No 13
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.2e-06 Score=91.02 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=71.2
Q ss_pred hccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCC
Q psy7191 78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNN 154 (413)
Q Consensus 78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~ 154 (413)
..|. +++|..++|+++|.||.|.+|++..+ .++|+|+|+++.+++.++++++.. .++++++++...+...+. .
T Consensus 246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~---~ 321 (434)
T PRK14901 246 PLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP---Q 321 (434)
T ss_pred HHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc---c
Confidence 3454 78899999999999999999999874 589999999999999998877654 378999988776542211 1
Q ss_pred CCCCccEEEEcCCCCcc
Q psy7191 155 NFNSIDGIIMDVGISDS 171 (413)
Q Consensus 155 ~~~~VDGILfDLGvSS~ 171 (413)
..+.+|.||+|-.||..
T Consensus 322 ~~~~fD~Vl~DaPCSg~ 338 (434)
T PRK14901 322 WRGYFDRILLDAPCSGL 338 (434)
T ss_pred ccccCCEEEEeCCCCcc
Confidence 12469999999998763
No 14
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.37 E-value=1.3e-06 Score=92.21 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=69.2
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
+++|..++|+|.|.||.|.+|++.++ .|.|+|.|+++..+...+++++.++ ++.+.+.+-..+...+. ..|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~------~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP------ETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch------hhc
Confidence 78999999999999999999999985 4899999999999999888777654 77777777665544432 359
Q ss_pred cEEEEcCCCCcc
Q psy7191 160 DGIIMDVGISDS 171 (413)
Q Consensus 160 DGILfDLGvSS~ 171 (413)
|.||+|..||..
T Consensus 185 D~ILvDaPCSG~ 196 (470)
T PRK11933 185 DAILLDAPCSGE 196 (470)
T ss_pred CeEEEcCCCCCC
Confidence 999999999864
No 15
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.35 E-value=7.8e-07 Score=82.04 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=82.2
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL 163 (413)
.+++|+|+|.||.|-++.... .+|+|+|+||..++.|+.+.+-|+ ++.+++++|.++. ....... .+|.|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---~~~~~~~-~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---KRLKSNK-IFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG---GGB-------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH---hhccccc-cccEEE
Confidence 378999999999999999885 479999999999999998877664 9999999987643 3222111 169998
Q ss_pred EcCCCCccCcc-CCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCC
Q psy7191 164 MDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLER 242 (413)
Q Consensus 164 fDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~T 242 (413)
++ |=-|-+|......|++-+.+..+..+++.. +++++..|+-.-. +-..
T Consensus 75 ---------lSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~------------------~~~~t~nv~l~LP---Rn~d 124 (163)
T PF09445_consen 75 ---------LSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKA------------------ARKITPNVVLFLP---RNSD 124 (163)
T ss_dssp ---------E---BSSGGGGGSSSB-TTTSSSS--HHHHHHH------------------HHHH-S-EEEEEE---TTB-
T ss_pred ---------ECCCCCCccccccCccCHHHccCCCCHHHHHHH------------------HHhhCCCEEEEeC---CCCC
Confidence 67 667899998888888322233344444433 7777777765542 2355
Q ss_pred HHHHHHHHHhhcCC
Q psy7191 243 TRDLNELVASVSRP 256 (413)
Q Consensus 243 T~eL~~iI~~~~~~ 256 (413)
..||+++...+...
T Consensus 125 l~ql~~~~~~l~~~ 138 (163)
T PF09445_consen 125 LNQLSQLTRELFGP 138 (163)
T ss_dssp HHHHHHT----T-T
T ss_pred HHHHHHHhccccCC
Confidence 67776665555443
No 16
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.34 E-value=1.6e-06 Score=89.72 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=68.1
Q ss_pred HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHHHhcC
Q psy7191 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNILKNMN 153 (413)
Q Consensus 77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~ 153 (413)
+..|. +.+|..++|+++|.||.|.++++..+.++|+|+|+++.+++.++++++..+ +++++.++-..+..+.
T Consensus 231 ~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~---- 305 (426)
T TIGR00563 231 ATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA---- 305 (426)
T ss_pred HHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc----
Confidence 34454 888999999999999999999998888899999999999999988876543 3444555433322211
Q ss_pred CCCCCccEEEEcCCCCccC
Q psy7191 154 NNFNSIDGIIMDVGISDSQ 172 (413)
Q Consensus 154 ~~~~~VDGILfDLGvSS~Q 172 (413)
....+|.|+.|-.||+.-
T Consensus 306 -~~~~fD~VllDaPcSg~G 323 (426)
T TIGR00563 306 -ENEQFDRILLDAPCSATG 323 (426)
T ss_pred -cccccCEEEEcCCCCCCc
Confidence 124699999999988653
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.29 E-value=6e-06 Score=68.16 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=61.5
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC-CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND-PRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
|++.++|.-+|.|..+..+++..|.++|+|+|.+|.+++.|+++.. .. ++++++++++ .. ... . ...+|.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~--~~~---~-~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF--DPD---F-LEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG--GTT---T-SSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc--Ccc---c-CCCCCE
Confidence 5788999999999999999998899999999999999999998772 22 4999999998 21 111 1 236999
Q ss_pred EEEcC
Q psy7191 162 IIMDV 166 (413)
Q Consensus 162 ILfDL 166 (413)
|+.+.
T Consensus 74 v~~~~ 78 (112)
T PF12847_consen 74 VICSG 78 (112)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99887
No 18
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.27 E-value=3e-06 Score=79.50 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=73.6
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChH
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLP 146 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~ 146 (413)
|.+...+++.|. ++++..++|..+|.|..|..+++..+ +++|+|+|+++.+++.|+++++.. .++++++++..+.
T Consensus 63 p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~- 140 (215)
T TIGR00080 63 PHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG- 140 (215)
T ss_pred HHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC-
Confidence 667788889886 89999999999999999988888764 689999999999999999877654 4799999887542
Q ss_pred HHHHhcCCCCCCccEEEEcCCC
Q psy7191 147 NILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 147 ~~L~~~~~~~~~VDGILfDLGv 168 (413)
+.. ...+|.|++|..+
T Consensus 141 --~~~----~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 141 --WEP----LAPYDRIYVTAAG 156 (215)
T ss_pred --Ccc----cCCCCEEEEcCCc
Confidence 111 1369999988654
No 19
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.26 E-value=4.9e-06 Score=69.21 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=66.4
Q ss_pred hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhc
Q psy7191 75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~ 152 (413)
..++.+. +.++..++|..+|.|.++..+++..|.++|+|+|.++.+++.+++..+.+ ++++++.++..+....+
T Consensus 10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (124)
T TIGR02469 10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS--- 85 (124)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh---
Confidence 3455554 66778999999999999999999988899999999999999998765543 47888887765421111
Q ss_pred CCCCCCccEEEEcCCC
Q psy7191 153 NNNFNSIDGIIMDVGI 168 (413)
Q Consensus 153 ~~~~~~VDGILfDLGv 168 (413)
...+|.|+.+.+.
T Consensus 86 ---~~~~D~v~~~~~~ 98 (124)
T TIGR02469 86 ---LPEPDRVFIGGSG 98 (124)
T ss_pred ---cCCCCEEEECCcc
Confidence 1369999986543
No 20
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.22 E-value=3.6e-06 Score=83.25 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=70.1
Q ss_pred HhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcC
Q psy7191 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMN 153 (413)
Q Consensus 77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~ 153 (413)
+..|. ++++..++|+|.|.||.|.+|++..+ .+.|+|.|+++..+..-+++++..+ .+.++..+...+......
T Consensus 78 ~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~-- 154 (283)
T PF01189_consen 78 ALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE-- 154 (283)
T ss_dssp HHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT--
T ss_pred ccccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc--
Confidence 34455 89999999999999999999999986 6999999999999999877766554 677776555544333321
Q ss_pred CCCCCccEEEEcCCCCcc
Q psy7191 154 NNFNSIDGIIMDVGISDS 171 (413)
Q Consensus 154 ~~~~~VDGILfDLGvSS~ 171 (413)
..+|.||+|-.||..
T Consensus 155 ---~~fd~VlvDaPCSg~ 169 (283)
T PF01189_consen 155 ---SKFDRVLVDAPCSGL 169 (283)
T ss_dssp ---TTEEEEEEECSCCCG
T ss_pred ---cccchhhcCCCccch
Confidence 249999999999864
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.22 E-value=1.9e-05 Score=73.90 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=70.1
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHH
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILK 150 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~ 150 (413)
++++..+. ++++..++|+.+|.|.-+..+.+.. |.++|+|+|.++.+++.|+++++.. +++.++++++..++
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---- 109 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP---- 109 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC----
Confidence 56677776 7889999999999999999999887 5789999999999999998876532 48899999876542
Q ss_pred hcCCCCCCccEEEEcCCC
Q psy7191 151 NMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 151 ~~~~~~~~VDGILfDLGv 168 (413)
.+.+.+|.|++++++
T Consensus 110 ---~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 110 ---FDDNSFDYVTIGFGL 124 (231)
T ss_pred ---CCCCCccEEEEeccc
Confidence 123479999987665
No 22
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.19 E-value=6.7e-06 Score=85.75 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=67.4
Q ss_pred ccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCC
Q psy7191 79 GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
.|. +.+|+.++|+++|.||.|..+++..+ .++|+|+|+++.+++.++++++.. .++.+++++...+. .
T Consensus 245 ~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---~----- 315 (445)
T PRK14904 245 LLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---P----- 315 (445)
T ss_pred hcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---c-----
Confidence 443 77889999999999999999998874 589999999999999998877654 36888888765542 1
Q ss_pred CCCccEEEEcCCCCcc
Q psy7191 156 FNSIDGIIMDVGISDS 171 (413)
Q Consensus 156 ~~~VDGILfDLGvSS~ 171 (413)
...+|.|++|-.||..
T Consensus 316 ~~~fD~Vl~D~Pcsg~ 331 (445)
T PRK14904 316 EEQPDAILLDAPCTGT 331 (445)
T ss_pred CCCCCEEEEcCCCCCc
Confidence 2369999999888653
No 23
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.08 E-value=2.5e-05 Score=73.70 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=73.7
Q ss_pred cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCCh
Q psy7191 69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDL 145 (413)
Q Consensus 69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l 145 (413)
-|-+...+++.+. ++++..++|+.+|.|..|..+.+.. ++++|+|+|+++.+++.|+++++.. .++++++++....
T Consensus 61 ~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 61 AIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred cHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 4677888888886 8999999999999999887777776 4589999999999999999877643 4899999987543
Q ss_pred HHHHHhcCCCCCCccEEEEcCCC
Q psy7191 146 PNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 146 ~~~L~~~~~~~~~VDGILfDLGv 168 (413)
. . ....+|.|+++..+
T Consensus 140 ~---~----~~~~fD~I~~~~~~ 155 (212)
T PRK13942 140 Y---E----ENAPYDRIYVTAAG 155 (212)
T ss_pred C---C----cCCCcCEEEECCCc
Confidence 1 1 12369999987554
No 24
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.06 E-value=5.9e-05 Score=70.96 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=67.3
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHH
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNIL 149 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L 149 (413)
+++.+++.+. ..+..++|.++|.|..+..+++..|+..++|+|.++.+++.|+++.... +++.++++++... +
T Consensus 76 l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~ 150 (251)
T TIGR03534 76 LVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---L 150 (251)
T ss_pred HHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---C
Confidence 3444555553 3456899999999999999999888899999999999999998866543 3789999887531 1
Q ss_pred HhcCCCCCCccEEEEcCCCC
Q psy7191 150 KNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 150 ~~~~~~~~~VDGILfDLGvS 169 (413)
..+++|.|+.|..|.
T Consensus 151 -----~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 151 -----PGGKFDLIVSNPPYI 165 (251)
T ss_pred -----cCCceeEEEECCCCC
Confidence 124699999877663
No 25
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.05 E-value=3.4e-05 Score=69.75 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=71.0
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~ 152 (413)
++.+++.+. +.++..++|.-+|.|..|..++++ .++|+|+|.|+.+++.++++....++++++++++.++. +.
T Consensus 2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~--~~-- 74 (169)
T smart00650 2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD--LP-- 74 (169)
T ss_pred HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC--cc--
Confidence 456677776 778889999999999999999987 47899999999999999887755558999999987653 11
Q ss_pred CCCCCCccEEEEcCCCC
Q psy7191 153 NNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 153 ~~~~~~VDGILfDLGvS 169 (413)
...+|.|+.|+.|.
T Consensus 75 ---~~~~d~vi~n~Py~ 88 (169)
T smart00650 75 ---KLQPYKVVGNLPYN 88 (169)
T ss_pred ---ccCCCEEEECCCcc
Confidence 12489999998885
No 26
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.05 E-value=1.7e-05 Score=74.23 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=71.9
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCCh
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDL 145 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l 145 (413)
|-+...+++.|. ++++..++|..+|.|..|..+.+..+ .++|+|+|+++.+++.|+++++.. . +++++++++.+.
T Consensus 58 p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 58 PHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 446777788886 88899999999999999888887774 689999999999999998876543 2 689999887653
Q ss_pred HHHHHhcCCCCCCccEEEEcCCC
Q psy7191 146 PNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 146 ~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+.. ...+|.|+++.++
T Consensus 137 ---~~~----~~~fD~Ii~~~~~ 152 (205)
T PRK13944 137 ---LEK----HAPFDAIIVTAAA 152 (205)
T ss_pred ---Ccc----CCCccEEEEccCc
Confidence 111 1369999988765
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.04 E-value=1.6e-05 Score=70.15 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=63.1
Q ss_pred CCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
+.+..++|.-+|.|..+..+++. .|+++++|+|.++++++.|+++.+. ++++++++++..+++..+ + +.+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~-----~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQEL-----E-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCS-----S-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccccc-----C-CCee
Confidence 45789999999999999999955 5789999999999999999987543 448999999998865321 1 3699
Q ss_pred EEEEcCCC
Q psy7191 161 GIIMDVGI 168 (413)
Q Consensus 161 GILfDLGv 168 (413)
.|+.+..+
T Consensus 76 ~I~~~~~l 83 (152)
T PF13847_consen 76 IIISNGVL 83 (152)
T ss_dssp EEEEESTG
T ss_pred EEEEcCch
Confidence 99988544
No 28
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.02 E-value=1.9e-05 Score=78.76 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=78.9
Q ss_pred hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC---CCCeE
Q psy7191 63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN---DPRLV 136 (413)
Q Consensus 63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~---~~rv~ 136 (413)
-.++||+ |.+++.+++.+. +.+++.++|..+|.|..|..+++.. .+|+|+|+|+.+++.+++.++. .++++
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ 88 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLE 88 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEE
Confidence 4567777 789999999986 8889999999999999999999874 5799999999999999887653 34899
Q ss_pred EEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191 137 PVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 137 ~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS 169 (413)
++++++-..+ + ..+|.|+.||.|.
T Consensus 89 ii~~Dal~~~--~-------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 89 VIEGDALKTE--F-------PYFDVCVANVPYQ 112 (294)
T ss_pred EEECCHhhhc--c-------cccCEEEecCCcc
Confidence 9999986542 1 2479999999984
No 29
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.01 E-value=2e-05 Score=73.76 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=68.3
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCC-CChHH
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKF-SDLPN 147 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nF-s~l~~ 147 (413)
-|..+..+.+. +++..++|..+|.|.++..+++..|+++|+|+|.++.+++.++++.+. .+++.+++++. ..+..
T Consensus 28 ~~~~~~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~ 105 (202)
T PRK00121 28 PAPLDWAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLD 105 (202)
T ss_pred CCCCCHHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHH
Confidence 34455555554 367899999999999999999988888999999999999999876543 24899999987 55543
Q ss_pred HHHhcCCCCCCccEEEEcC
Q psy7191 148 ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 148 ~L~~~~~~~~~VDGILfDL 166 (413)
.+. .+.+|.|++++
T Consensus 106 ~~~-----~~~~D~V~~~~ 119 (202)
T PRK00121 106 MFP-----DGSLDRIYLNF 119 (202)
T ss_pred HcC-----ccccceEEEEC
Confidence 332 24689998754
No 30
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.00 E-value=3.1e-05 Score=75.43 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=73.6
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHh
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~ 151 (413)
++.++.+. +.+|..++|+++|+|--+..+.+..+.++|+|+|+.+.+|+.|+++..... .+.+++++..+|+ +
T Consensus 41 ~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f-- 115 (238)
T COG2226 41 RALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--F-- 115 (238)
T ss_pred HHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--C--
Confidence 56667775 668999999999999999999999899999999999999999998876532 5999999998875 2
Q ss_pred cCCCCCCccEEEEcCCC
Q psy7191 152 MNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 152 ~~~~~~~VDGILfDLGv 168 (413)
+.+.+|.+.+..|.
T Consensus 116 ---~D~sFD~vt~~fgl 129 (238)
T COG2226 116 ---PDNSFDAVTISFGL 129 (238)
T ss_pred ---CCCccCEEEeeehh
Confidence 33579999988887
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.00 E-value=2.9e-05 Score=71.68 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=59.1
Q ss_pred cccchHhHHh----ccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCC
Q psy7191 69 YPRTFQTSAS----GLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKF 142 (413)
Q Consensus 69 ~pvll~evi~----~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nF 142 (413)
+|+.-.++-. .|. +.+++.++|+.+|.|.++..++...|.++|+|+|.|+.+++.++++++.+ .++++++++.
T Consensus 21 ~p~t~~~v~~~l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 21 IPLTKREVRLLLISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred CCCCHHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 5666555443 343 67889999999999999999987778899999999999999998876544 3788888775
Q ss_pred C
Q psy7191 143 S 143 (413)
Q Consensus 143 s 143 (413)
.
T Consensus 100 ~ 100 (196)
T PRK07402 100 P 100 (196)
T ss_pred H
Confidence 3
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.97 E-value=4.9e-05 Score=69.54 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=66.9
Q ss_pred ccccchHhHH----hccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecC
Q psy7191 68 KYPRTFQTSA----SGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGK 141 (413)
Q Consensus 68 H~pvll~evi----~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~n 141 (413)
++|+..+++- +.|. +.+++.++|+.+|.|.++..++...|+++|+|+|+++.+++.++++.+.+ .++++++++
T Consensus 11 ~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d 89 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE 89 (187)
T ss_pred CCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 6776666644 4454 66888999999999999999999888899999999999999998765543 378888876
Q ss_pred CCChHHHHHhcCCCCCCccEEEE
Q psy7191 142 FSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 142 Fs~l~~~L~~~~~~~~~VDGILf 164 (413)
.. ..+ ...+|.|++
T Consensus 90 ~~---~~~------~~~~D~v~~ 103 (187)
T PRK08287 90 AP---IEL------PGKADAIFI 103 (187)
T ss_pred ch---hhc------CcCCCEEEE
Confidence 42 111 135888885
No 33
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.94 E-value=4.8e-05 Score=73.82 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=77.3
Q ss_pred hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191 63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY 139 (413)
Q Consensus 63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~ 139 (413)
..|+||+ |-+++.+++.+. ..++..++|..+|.|..|..+++. ..+|+|+|+|+.+++.++++.+..+++++++
T Consensus 5 k~~GQnfl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~ 81 (258)
T PRK14896 5 KKLGQHFLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIE 81 (258)
T ss_pred CcCCccccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence 4566665 567778888876 778899999999999999999988 3589999999999999988765556899999
Q ss_pred cCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191 140 GKFSDLPNILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 140 ~nFs~l~~~L~~~~~~~~~VDGILfDLGvS 169 (413)
+++..++ + ..+|.|+.++.|.
T Consensus 82 ~D~~~~~--~-------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 82 GDALKVD--L-------PEFNKVVSNLPYQ 102 (258)
T ss_pred eccccCC--c-------hhceEEEEcCCcc
Confidence 9987653 1 1378999999883
No 34
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.93 E-value=3.3e-05 Score=74.53 Aligned_cols=108 Identities=20% Similarity=0.283 Sum_probs=57.7
Q ss_pred HHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhh
Q psy7191 50 LKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTL 128 (413)
Q Consensus 50 ~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~l 128 (413)
....|-.++++-+ ++.|.-. -+.+++.+. +.++..++|+++|+|-=|..+++.. |+++|+|+|..+.+++.|+++
T Consensus 16 ia~~YD~~n~~ls--~g~~~~w-r~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k 91 (233)
T PF01209_consen 16 IAPRYDRMNDLLS--FGQDRRW-RRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK 91 (233)
T ss_dssp ------------------------SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred HHHHhCCCccccC--CcHHHHH-HHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence 3445555555543 2333221 125566665 7889999999999997777788876 679999999999999999987
Q ss_pred hcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 129 AAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 129 l~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
++.. .++++++++..+++ + +.+.+|.|..=+|+
T Consensus 92 ~~~~~~~~i~~v~~da~~lp--~-----~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 92 LKREGLQNIEFVQGDAEDLP--F-----PDNSFDAVTCSFGL 126 (233)
T ss_dssp HHHTT--SEEEEE-BTTB----S------TT-EEEEEEES-G
T ss_pred HHhhCCCCeeEEEcCHHHhc--C-----CCCceeEEEHHhhH
Confidence 6543 38999999998875 2 23579999955544
No 35
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.93 E-value=1.9e-05 Score=65.72 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=61.6
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
|..++|.++|.|--+.++++.. ..+++|+|+||.+++.|+.++... .++.++++++..+...+ ..+++|.|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence 4679999999998888888886 689999999999999998866542 38999999986554222 23579999
Q ss_pred EEcCCCCcc
Q psy7191 163 IMDVGISDS 171 (413)
Q Consensus 163 LfDLGvSS~ 171 (413)
++|..|...
T Consensus 75 v~npP~~~~ 83 (117)
T PF13659_consen 75 VTNPPYGPR 83 (117)
T ss_dssp EE--STTSB
T ss_pred EECCCCccc
Confidence 999999643
No 36
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.93 E-value=0.0001 Score=71.67 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=66.6
Q ss_pred HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhc-----CCCCeEEEecCCCChHHHHH
Q psy7191 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAA-----NDPRLVPVYGKFSDLPNILK 150 (413)
Q Consensus 77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~-----~~~rv~~i~~nFs~l~~~L~ 150 (413)
++.+. +.++..++|..+|+|..+..+.+.. |+++|+|+|.++++++.|+++.. ..+++.+++++..+++
T Consensus 66 ~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---- 140 (261)
T PLN02233 66 VSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---- 140 (261)
T ss_pred HHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC----
Confidence 34444 6778899999999999888888876 57899999999999999976542 1237899999887653
Q ss_pred hcCCCCCCccEEEEcCCCCc
Q psy7191 151 NMNNNFNSIDGIIMDVGISD 170 (413)
Q Consensus 151 ~~~~~~~~VDGILfDLGvSS 170 (413)
++.+.+|.|++.+++..
T Consensus 141 ---~~~~sfD~V~~~~~l~~ 157 (261)
T PLN02233 141 ---FDDCYFDAITMGYGLRN 157 (261)
T ss_pred ---CCCCCEeEEEEeccccc
Confidence 22357999998777643
No 37
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.93 E-value=5.9e-05 Score=69.93 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=68.1
Q ss_pred CccccchHhH----HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEE
Q psy7191 67 KKYPRTFQTS----ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND---PRLVPV 138 (413)
Q Consensus 67 ~H~pvll~ev----i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i 138 (413)
+|.|+.-.|+ +..+. +.+++.++|..+|.|..+..++... +.++|+|+|+++.+++.++++...+ .++.++
T Consensus 19 ~~~~~t~~~~r~~~l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~ 97 (198)
T PRK00377 19 EEIPMTKEEIRALALSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI 97 (198)
T ss_pred CCCCCCHHHHHHHHHHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 3667665554 23343 6789999999999999999998776 5689999999999999998765443 378888
Q ss_pred ecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191 139 YGKFSDLPNILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 139 ~~nFs~l~~~L~~~~~~~~~VDGILfD 165 (413)
++++.+ ++.... ..+|.|+.+
T Consensus 98 ~~d~~~---~l~~~~---~~~D~V~~~ 118 (198)
T PRK00377 98 KGEAPE---ILFTIN---EKFDRIFIG 118 (198)
T ss_pred Eechhh---hHhhcC---CCCCEEEEC
Confidence 887754 333321 368999864
No 38
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.92 E-value=4.5e-05 Score=79.53 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=71.5
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN 147 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~ 147 (413)
..|.+++++.+. +.++..++|+.+|.|..|..+++.. .+|+|+|+++.|++.|+++++.. .++++++++..+.
T Consensus 283 e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~-- 357 (443)
T PRK13168 283 QKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED-- 357 (443)
T ss_pred HHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh--
Confidence 467788888886 7788999999999999999988774 68999999999999998876532 3789999887542
Q ss_pred HHHhcCCCCCCccEEEEcCCCC
Q psy7191 148 ILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 148 ~L~~~~~~~~~VDGILfDLGvS 169 (413)
+.........+|.|++|-.++
T Consensus 358 -l~~~~~~~~~fD~Vi~dPPr~ 378 (443)
T PRK13168 358 -FTDQPWALGGFDKVLLDPPRA 378 (443)
T ss_pred -hhhhhhhcCCCCEEEECcCCc
Confidence 221111123589999776653
No 39
>PRK08317 hypothetical protein; Provisional
Probab=97.91 E-value=7.5e-05 Score=68.62 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=71.4
Q ss_pred ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC-CCCeEEEecCCCCh
Q psy7191 68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDL 145 (413)
Q Consensus 68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~-~~rv~~i~~nFs~l 145 (413)
|+.-+-+..++.+. +.++..++|+.+|.|+.+..+++.+ |.++++|+|.++.+++.++++... ..++.++.+++..+
T Consensus 3 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 3 DFRRYRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL 81 (241)
T ss_pred hHHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC
Confidence 44444556667776 7888999999999999999999887 778999999999999999876332 23788888887654
Q ss_pred HHHHHhcCCCCCCccEEEEcCCC
Q psy7191 146 PNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 146 ~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+ +..+.+|.|+.+..+
T Consensus 82 ~-------~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 82 P-------FPDGSFDAVRSDRVL 97 (241)
T ss_pred C-------CCCCCceEEEEechh
Confidence 3 122469999987654
No 40
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.90 E-value=6.4e-05 Score=73.55 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=77.5
Q ss_pred hhhccCCccc---cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEE
Q psy7191 61 SEDIYNKKYP---RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVP 137 (413)
Q Consensus 61 ~~n~y~~H~p---vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~ 137 (413)
....|++|+. .+.+.+++.+. +.++..++|..+|.|..|..++++.+ +|+|+|.|+.+++.++++... +++++
T Consensus 16 ~~k~~gq~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~-~~v~~ 91 (272)
T PRK00274 16 AKKSLGQNFLIDENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE-DNLTI 91 (272)
T ss_pred CCcccCcCcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc-CceEE
Confidence 3566778654 46777888886 78889999999999999999999864 899999999999999876543 58999
Q ss_pred EecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 138 i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+++++.+++ +... ..+.|+.++.|
T Consensus 92 i~~D~~~~~--~~~~-----~~~~vv~NlPY 115 (272)
T PRK00274 92 IEGDALKVD--LSEL-----QPLKVVANLPY 115 (272)
T ss_pred EEChhhcCC--HHHc-----CcceEEEeCCc
Confidence 999988763 2211 14889999988
No 41
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.88 E-value=7.3e-05 Score=73.83 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=67.1
Q ss_pred cchHhHHhc-cCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChH
Q psy7191 71 RTFQTSASG-LNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLP 146 (413)
Q Consensus 71 vll~evi~~-L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~ 146 (413)
.++.+.+.. +. +.++..++|..+|.|..+..++...|+++|+|+|+++.|++.|+++.+.. .++.++++++.+
T Consensus 107 ~lv~~~l~~~~~-~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-- 183 (284)
T TIGR03533 107 ELIEDGFAPWLE-PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-- 183 (284)
T ss_pred HHHHHHHHHHhc-cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh--
Confidence 344555542 32 34557899999999999999999989899999999999999998876533 279999988532
Q ss_pred HHHHhcCCCCCCccEEEEcCCC
Q psy7191 147 NILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 147 ~~L~~~~~~~~~VDGILfDLGv 168 (413)
.+ +...+|.|+.|-.|
T Consensus 184 -~~-----~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 184 -AL-----PGRKYDLIVSNPPY 199 (284)
T ss_pred -cc-----CCCCccEEEECCCC
Confidence 11 12369999988666
No 42
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.88 E-value=6.5e-05 Score=72.43 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=68.7
Q ss_pred hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191 63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY 139 (413)
Q Consensus 63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~ 139 (413)
-.|++|+ |.+++++++.+. ..+++.++|.-+|.|..|..|++..+ .|+|+|.|+.+++.+++.....+++++++
T Consensus 5 k~~gq~fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~ 81 (253)
T TIGR00755 5 KSLGQNFLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIE 81 (253)
T ss_pred CCCCCccCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEE
Confidence 4578888 568889999886 77889999999999999999999875 59999999999999987764445899999
Q ss_pred cCCCChH
Q psy7191 140 GKFSDLP 146 (413)
Q Consensus 140 ~nFs~l~ 146 (413)
+++.+++
T Consensus 82 ~D~~~~~ 88 (253)
T TIGR00755 82 GDALKVD 88 (253)
T ss_pred CchhcCC
Confidence 9987654
No 43
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.86 E-value=5e-05 Score=62.58 Aligned_cols=69 Identities=28% Similarity=0.371 Sum_probs=54.0
Q ss_pred EEEEecCCchhHHHHHHhc---CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191 89 MIDMTYGDGNHTRLILENI---GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 89 ~VDaTlG~GGHS~aILe~~---p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf 164 (413)
++|..+|.|-++..++..+ |+.+++|+|+++++++.++++.... .+++++++++.+++.. .+.+|.|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~-------~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS-------DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH-------SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc-------CCCeeEEEE
Confidence 5899999999999999987 4579999999999999998876432 3899999999987531 136999997
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=97.86 E-value=0.00015 Score=73.28 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=68.4
Q ss_pred cchHhHHhccCCC-----CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCC
Q psy7191 71 RTFQTSASGLNDS-----SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKF 142 (413)
Q Consensus 71 vll~evi~~L~~~-----~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nF 142 (413)
.|++++++.+. + +++..++|..||.|+.+..+.+++ +++|+|+|.++.+++.++++.+. . +++.++.++.
T Consensus 100 ~~~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 100 RMIEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc
Confidence 47888888875 5 678899999999999999988876 67999999999999999876543 2 3799999887
Q ss_pred CChHHHHHhcCCCCCCccEEEEc
Q psy7191 143 SDLPNILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 143 s~l~~~L~~~~~~~~~VDGILfD 165 (413)
.+++ ++.+.+|.|+..
T Consensus 178 ~~~~-------~~~~~FD~V~s~ 193 (340)
T PLN02244 178 LNQP-------FEDGQFDLVWSM 193 (340)
T ss_pred ccCC-------CCCCCccEEEEC
Confidence 6642 223579999864
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.85 E-value=7.8e-05 Score=68.32 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=69.0
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK 150 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~ 150 (413)
....+++.+. ..++..++|+.+|.|+.+..+++..|. ++++|+|+++.+++.++++.....++.++.+++.++.
T Consensus 27 ~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 27 WRRRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred HHHHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 3455666665 557889999999999999999999876 8999999999999998876642237888888887653
Q ss_pred hcCCCCCCccEEEEcCCC
Q psy7191 151 NMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 151 ~~~~~~~~VDGILfDLGv 168 (413)
...+.+|.|+...++
T Consensus 102 ---~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 102 ---FEDNSFDAVTIAFGL 116 (223)
T ss_pred ---CCCCcEEEEEEeeee
Confidence 112469999876654
No 46
>PRK04266 fibrillarin; Provisional
Probab=97.84 E-value=0.00014 Score=70.03 Aligned_cols=93 Identities=8% Similarity=0.119 Sum_probs=65.7
Q ss_pred ccccchHhHHh---ccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC
Q psy7191 68 KYPRTFQTSAS---GLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD 144 (413)
Q Consensus 68 H~pvll~evi~---~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~ 144 (413)
+.+=+...++. .+. ++++..++|+.+|.|+-|..+.+..+.++|||+|+++.+++...++.+..+++.++.++..+
T Consensus 53 ~r~~~~~~ll~~~~~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~ 131 (226)
T PRK04266 53 RRSKLAAAILKGLKNFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARK 131 (226)
T ss_pred CccchHHHHHhhHhhCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCC
Confidence 33444444444 354 78999999999999999999988887789999999999988765554433578888888654
Q ss_pred hHHHHHhcCCCCCCccEEEEc
Q psy7191 145 LPNILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 145 l~~~L~~~~~~~~~VDGILfD 165 (413)
..... ++. ..||.|+.|
T Consensus 132 ~~~~~---~l~-~~~D~i~~d 148 (226)
T PRK04266 132 PERYA---HVV-EKVDVIYQD 148 (226)
T ss_pred cchhh---hcc-ccCCEEEEC
Confidence 31111 122 358988844
No 47
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.82 E-value=0.00013 Score=69.94 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=66.4
Q ss_pred hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-CC-CCeEEEecCCCChHHHHHhc
Q psy7191 75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-ND-PRLVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-~~-~rv~~i~~nFs~l~~~L~~~ 152 (413)
.++..+. ..++..++|..+|.|..+..++...|..+|+|+|+++.+++.|+++.+ .. .++.++++++...
T Consensus 99 ~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~------- 170 (275)
T PRK09328 99 WALEALL-LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP------- 170 (275)
T ss_pred HHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-------
Confidence 3333343 456789999999999999999999998999999999999999988765 22 3789999886321
Q ss_pred CCCCCCccEEEEcCCCC
Q psy7191 153 NNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 153 ~~~~~~VDGILfDLGvS 169 (413)
+..+.+|.|+.|..|.
T Consensus 171 -~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 171 -LPGGRFDLIVSNPPYI 186 (275)
T ss_pred -CCCCceeEEEECCCcC
Confidence 1124699999887763
No 48
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.82 E-value=5.9e-05 Score=72.50 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=75.4
Q ss_pred HHHHhH-HhhhhhccCCccccc--------hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHH
Q psy7191 52 KNLASL-KRLSEDIYNKKYPRT--------FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESF 122 (413)
Q Consensus 52 ~~~~sl-~~~~~n~y~~H~pvl--------l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al 122 (413)
|+|.-+ ++-.+|+|+.....+ +++.++.+. .++..++|..+|.|..+..+++. ..+|+|+|.+++++
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l 79 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMI 79 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHH
Confidence 334443 455667788764332 235555553 45679999999999999999876 46899999999999
Q ss_pred HHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 123 EKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 123 ~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
+.|+++.... +++++++++..++.... .+.+|.|++...
T Consensus 80 ~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD~V~~~~v 121 (255)
T PRK11036 80 QRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVDLILFHAV 121 (255)
T ss_pred HHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCCEEEehhH
Confidence 9998876542 37899998887654322 246999996543
No 49
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.81 E-value=0.00023 Score=65.87 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=72.3
Q ss_pred ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC---CCCeEEEecCCC
Q psy7191 68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN---DPRLVPVYGKFS 143 (413)
Q Consensus 68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~---~~rv~~i~~nFs 143 (413)
+.......++..+. ..++..++|..+|.|+.+..++...| +.+++|+|.++.+++.++++... ..++.++.+++.
T Consensus 35 ~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 113 (239)
T PRK00216 35 LHRVWRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE 113 (239)
T ss_pred CcHHHHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc
Confidence 34455667787776 66788999999999999999999887 68999999999999999887654 237888988887
Q ss_pred ChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 144 DLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 144 ~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
++. ...+.+|.|+...+
T Consensus 114 ~~~-------~~~~~~D~I~~~~~ 130 (239)
T PRK00216 114 ALP-------FPDNSFDAVTIAFG 130 (239)
T ss_pred cCC-------CCCCCccEEEEecc
Confidence 653 11246899986544
No 50
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.76 E-value=5.5e-05 Score=72.11 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=69.8
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCCh
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDL 145 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l 145 (413)
|-|...++++|. ++||..++|...|.| +..++|..+ +.++|+++|+|+...+.|+++++.. .++.+++++-..-
T Consensus 58 P~~~a~~l~~L~-l~pg~~VLeIGtGsG-Y~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALD-LKPGDRVLEIGTGSG-YQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTT-C-TT-EEEEES-TTS-HHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHh-cCCCCEEEEecCCCc-HHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 678889999997 999999999999999 566666665 5689999999999999999888753 3899999875421
Q ss_pred HHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191 146 PNILKNMNNNFNSIDGIIMDVGISD 170 (413)
Q Consensus 146 ~~~L~~~~~~~~~VDGILfDLGvSS 170 (413)
+.. ..++|.|++.-++..
T Consensus 136 ---~~~----~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 136 ---WPE----EAPFDRIIVTAAVPE 153 (209)
T ss_dssp ---TGG----G-SEEEEEESSBBSS
T ss_pred ---ccc----CCCcCEEEEeeccch
Confidence 122 136999999998864
No 51
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.76 E-value=7.5e-05 Score=75.52 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=73.3
Q ss_pred cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCCh
Q psy7191 69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDL 145 (413)
Q Consensus 69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l 145 (413)
-|.|+...++.+. +++++.++|..+|.|.-+..+++..+ .+.|+|+|+++++++.|++.++.. .++++++++....
T Consensus 65 ~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 65 QPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc
Confidence 5788888888886 88899999999999988888887775 478999999999999998866543 3788888875432
Q ss_pred HHHHHhcCCCCCCccEEEEcCCCC
Q psy7191 146 PNILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 146 ~~~L~~~~~~~~~VDGILfDLGvS 169 (413)
+.. ...+|.|+++.|+.
T Consensus 144 ---~~~----~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 144 ---VPE----FAPYDVIFVTVGVD 160 (322)
T ss_pred ---ccc----cCCccEEEECCchH
Confidence 211 13599999998864
No 52
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.73 E-value=0.00011 Score=69.47 Aligned_cols=82 Identities=27% Similarity=0.272 Sum_probs=66.3
Q ss_pred HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcC
Q psy7191 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMN 153 (413)
Q Consensus 76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~ 153 (413)
++..|. +.|+++++|.-+|+|.=|...+-..|.++|||||+|++|++.++++.+.|. ++.++.++- ++.|..+
T Consensus 26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A---p~~L~~~- 100 (187)
T COG2242 26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA---PEALPDL- 100 (187)
T ss_pred HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc---hHhhcCC-
Confidence 356676 999999999999999999999955699999999999999999998877664 899998764 3445432
Q ss_pred CCCCCccEEEEc
Q psy7191 154 NNFNSIDGIIMD 165 (413)
Q Consensus 154 ~~~~~VDGILfD 165 (413)
+ .+|+|++-
T Consensus 101 -~--~~daiFIG 109 (187)
T COG2242 101 -P--SPDAIFIG 109 (187)
T ss_pred -C--CCCEEEEC
Confidence 1 58888843
No 53
>PRK14967 putative methyltransferase; Provisional
Probab=97.71 E-value=0.00017 Score=68.04 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=66.5
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHH
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNIL 149 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L 149 (413)
.++-+.+..+. ..+++.++|..+|.|.-+..+... +..+|+|+|+++.+++.++++.+... +++++++++.. .+
T Consensus 23 ~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~ 97 (223)
T PRK14967 23 QLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AV 97 (223)
T ss_pred HHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hc
Confidence 45556666654 677889999999999888877654 44599999999999999988765433 67888877653 22
Q ss_pred HhcCCCCCCccEEEEcCCCC
Q psy7191 150 KNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 150 ~~~~~~~~~VDGILfDLGvS 169 (413)
. .+.+|.|+.|.+|.
T Consensus 98 ~-----~~~fD~Vi~npPy~ 112 (223)
T PRK14967 98 E-----FRPFDVVVSNPPYV 112 (223)
T ss_pred c-----CCCeeEEEECCCCC
Confidence 1 24699999888763
No 54
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.69 E-value=0.00012 Score=75.88 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=72.9
Q ss_pred CccccchH--hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCC
Q psy7191 67 KKYPRTFQ--TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKF 142 (413)
Q Consensus 67 ~H~pvll~--evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nF 142 (413)
...+.+++ .+++.+. ...+.++||..||.|.++.++....|+..++|+|+++.+++.|.++... .+++.+++++-
T Consensus 103 ~~~~~~~d~~~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA 181 (390)
T PRK14121 103 LKKPYILDIDNFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA 181 (390)
T ss_pred ccccccCCHHHHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 33444555 5677776 5667799999999999999999999999999999999999998766543 34899998886
Q ss_pred CChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 143 SDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 143 s~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
..+...+ +.+.+|.|.+.+.
T Consensus 182 ~~ll~~~-----~~~s~D~I~lnFP 201 (390)
T PRK14121 182 RLLLELL-----PSNSVEKIFVHFP 201 (390)
T ss_pred HHhhhhC-----CCCceeEEEEeCC
Confidence 5543333 2357999997643
No 55
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.69 E-value=0.00015 Score=70.49 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=67.7
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK 150 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~ 150 (413)
.|+++++..+....+...++|..+|.|.-+..++...|..+|+|+|+|+.|++.|+++++.. .++++++++.+ .+.
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~---~l~ 147 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYD---ALP 147 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechh---hcc
Confidence 46666666654122345899999999999999998888889999999999999998876543 35677777543 121
Q ss_pred hcCCCCCCccEEEEcCCCC
Q psy7191 151 NMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 151 ~~~~~~~~VDGILfDLGvS 169 (413)
.. . .+.+|.|++|-.|.
T Consensus 148 ~~-~-~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 148 TA-L-RGRVDILAANAPYV 164 (251)
T ss_pred hh-c-CCCEeEEEECCCCC
Confidence 11 1 13599999988884
No 56
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.68 E-value=0.0002 Score=71.66 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=60.5
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL 163 (413)
..++|..+|.|..+..++...|+.+|+|+|+++.|++.|+++.+.. +++.++++++.+ .+. ...+|.|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~-----~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALP-----GRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCC-----CCCccEEE
Confidence 6899999999999999999989999999999999999998876532 279999988632 121 23699999
Q ss_pred EcCCC
Q psy7191 164 MDVGI 168 (413)
Q Consensus 164 fDLGv 168 (413)
.|-.|
T Consensus 207 sNPPy 211 (307)
T PRK11805 207 SNPPY 211 (307)
T ss_pred ECCCC
Confidence 88655
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=97.66 E-value=0.0003 Score=63.07 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=59.4
Q ss_pred HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-C-eEEEecCCCChHHHHHhc
Q psy7191 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-R-LVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-r-v~~i~~nFs~l~~~L~~~ 152 (413)
++.+. ..+++.++|..+|.|+.+..+++. ..+|+|+|+++++++.+++.+... . + +.+++.++.+. +
T Consensus 16 ~~~~~-~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~--- 86 (188)
T PRK14968 16 AENAV-DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---F--- 86 (188)
T ss_pred HHhhh-ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---c---
Confidence 44443 567889999999999999998887 579999999999999988765432 2 2 77777765331 1
Q ss_pred CCCCCCccEEEEcCCC
Q psy7191 153 NNNFNSIDGIIMDVGI 168 (413)
Q Consensus 153 ~~~~~~VDGILfDLGv 168 (413)
....+|.|+.|.++
T Consensus 87 --~~~~~d~vi~n~p~ 100 (188)
T PRK14968 87 --RGDKFDVILFNPPY 100 (188)
T ss_pred --cccCceEEEECCCc
Confidence 12258999977654
No 58
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.64 E-value=0.00018 Score=72.13 Aligned_cols=87 Identities=18% Similarity=0.095 Sum_probs=65.2
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHH
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNIL 149 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L 149 (413)
|....+.... .+++..++|..+|.|+.+..... ...+|+|+|+|+.+++.|+++++.++ .+.++++++.+++.
T Consensus 170 la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~-- 244 (329)
T TIGR01177 170 LARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL-- 244 (329)
T ss_pred HHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc--
Confidence 4444444444 77899999999999987765432 45789999999999999988776543 57888998877532
Q ss_pred HhcCCCCCCccEEEEcCCC
Q psy7191 150 KNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 150 ~~~~~~~~~VDGILfDLGv 168 (413)
..+.+|.|+.|..|
T Consensus 245 -----~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 245 -----SSESVDAIATDPPY 258 (329)
T ss_pred -----ccCCCCEEEECCCC
Confidence 12469999998777
No 59
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.64 E-value=0.00036 Score=65.12 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=67.0
Q ss_pred cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChH
Q psy7191 69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLP 146 (413)
Q Consensus 69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~ 146 (413)
.|-+...+++.|. ++++..++|..+|.|..|..+.+.. ++|+++|+++.+++.++++++.. .++.++++++.+.
T Consensus 63 ~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~- 138 (212)
T PRK00312 63 QPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG- 138 (212)
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-
Confidence 3444556677776 8889999999999999887555543 48999999999999998876643 3688898886432
Q ss_pred HHHHhcCCCCCCccEEEEcCCC
Q psy7191 147 NILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 147 ~~L~~~~~~~~~VDGILfDLGv 168 (413)
+.. .+.+|.|+++..+
T Consensus 139 --~~~----~~~fD~I~~~~~~ 154 (212)
T PRK00312 139 --WPA----YAPFDRILVTAAA 154 (212)
T ss_pred --CCc----CCCcCEEEEccCc
Confidence 111 1369999988654
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.64 E-value=0.00015 Score=67.34 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
+..+++|..+|.|..+..+++..|++.++|+|+++.+++.|++++.. .+++.+++++..++...+ .+.+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~----~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF----FPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh----CCCCceeEE
Confidence 45699999999999999999999999999999999999998776543 248999998876543221 112368999
Q ss_pred EEcCC
Q psy7191 163 IMDVG 167 (413)
Q Consensus 163 LfDLG 167 (413)
+++++
T Consensus 92 ~~~~p 96 (194)
T TIGR00091 92 FLNFP 96 (194)
T ss_pred EEECC
Confidence 97754
No 61
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.61 E-value=0.00026 Score=67.58 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=66.9
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHh
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~ 151 (413)
...+.++.+. +.++..++|..+|.|..+..+++.+|.++|+|+|.++.+++.|+++. +++.++.+++..+ ..
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~---~~- 90 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASW---QP- 90 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhcc---CC-
Confidence 4567777775 77889999999999999999998888899999999999999998764 4677888876543 11
Q ss_pred cCCCCCCccEEEEcCC
Q psy7191 152 MNNNFNSIDGIIMDVG 167 (413)
Q Consensus 152 ~~~~~~~VDGILfDLG 167 (413)
...+|.|+.+..
T Consensus 91 ----~~~fD~v~~~~~ 102 (258)
T PRK01683 91 ----PQALDLIFANAS 102 (258)
T ss_pred ----CCCccEEEEccC
Confidence 236999996643
No 62
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.61 E-value=0.00023 Score=68.37 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=68.6
Q ss_pred ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH
Q psy7191 68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN 147 (413)
Q Consensus 68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~ 147 (413)
|.+.+...+++.+. ..+++.++|..||.|.-+..+.+..|+++|+|+|.++.+++.|++. ++.++++++.++
T Consensus 13 ~~~~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~-- 84 (255)
T PRK14103 13 HRGRPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDW-- 84 (255)
T ss_pred HhhCHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhC--
Confidence 44556678888886 7788999999999999999999888889999999999999998653 466777776433
Q ss_pred HHHhcCCCCCCccEEEEcCCC
Q psy7191 148 ILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 148 ~L~~~~~~~~~VDGILfDLGv 168 (413)
.. .+.+|.|+....+
T Consensus 85 -~~-----~~~fD~v~~~~~l 99 (255)
T PRK14103 85 -KP-----KPDTDVVVSNAAL 99 (255)
T ss_pred -CC-----CCCceEEEEehhh
Confidence 11 2369999987654
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.60 E-value=0.00036 Score=65.98 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=55.1
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCCh---HHHHHhcCCCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL---PNILKNMNNNFNS 158 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l---~~~L~~~~~~~~~ 158 (413)
.+++..++|..+|+|+.|..+++.. +.++|+|+|+++. ...+.++++++++.+. ++++...+ ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~~~~v~~i~~D~~~~~~~~~i~~~~~--~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DPIVGVDFLQGDFRDELVLKALLERVG--DSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cCCCCcEEEecCCCChHHHHHHHHHhC--CCC
Confidence 3678899999999999999999997 4589999999981 1234689999999884 34444333 246
Q ss_pred ccEEEEc
Q psy7191 159 IDGIIMD 165 (413)
Q Consensus 159 VDGILfD 165 (413)
+|.|+-|
T Consensus 118 ~D~V~S~ 124 (209)
T PRK11188 118 VQVVMSD 124 (209)
T ss_pred CCEEecC
Confidence 8888844
No 64
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.57 E-value=0.00032 Score=72.68 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHH
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNI 148 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~ 148 (413)
.|++.+++.+. +.++..++|+.+|.|..+..+.+.. .+|+|+|.++.|++.|+++++. ..++++++++..+.
T Consensus 279 ~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~--- 352 (431)
T TIGR00479 279 KLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV--- 352 (431)
T ss_pred HHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH---
Confidence 35566777775 6778899999999999999987653 5899999999999999887653 34899999987542
Q ss_pred HHhcCCCCCCccEEEEcCC
Q psy7191 149 LKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 149 L~~~~~~~~~VDGILfDLG 167 (413)
+.........+|.|++|-.
T Consensus 353 l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 353 LPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred HHHHHhcCCCCCEEEECcC
Confidence 3221111135899996544
No 65
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.57 E-value=0.00025 Score=67.34 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=58.9
Q ss_pred CCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNS 158 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~ 158 (413)
.++..++|..+|.|..+..+++.+ |+++++|+|.++.+++.|++++..+ .+++++++++..+. . ..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~--~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-------I--KN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------C--CC
Confidence 467899999999999999999875 6899999999999999998876543 27899999887542 1 24
Q ss_pred ccEEEEc
Q psy7191 159 IDGIIMD 165 (413)
Q Consensus 159 VDGILfD 165 (413)
+|.|+..
T Consensus 123 ~d~v~~~ 129 (239)
T TIGR00740 123 ASMVILN 129 (239)
T ss_pred CCEEeee
Confidence 7876643
No 66
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.57 E-value=0.00018 Score=71.85 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=62.5
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHH
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNIL 149 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L 149 (413)
|++.+.+.+. ..++..++|+.+|.|..+..+++. ..+|+|+|.++.|++.|+++.+.. +++++++++..++ +
T Consensus 161 l~~~v~~~l~-~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~---~ 234 (315)
T PRK03522 161 LYATARDWVR-ELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF---A 234 (315)
T ss_pred HHHHHHHHHH-hcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH---H
Confidence 4444555554 345689999999999999988874 468999999999999998876543 3789998876543 3
Q ss_pred HhcCCCCCCccEEEEc
Q psy7191 150 KNMNNNFNSIDGIIMD 165 (413)
Q Consensus 150 ~~~~~~~~~VDGILfD 165 (413)
... .+.+|.|++|
T Consensus 235 ~~~---~~~~D~Vv~d 247 (315)
T PRK03522 235 TAQ---GEVPDLVLVN 247 (315)
T ss_pred Hhc---CCCCeEEEEC
Confidence 221 1258999966
No 67
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.56 E-value=0.00023 Score=66.66 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
++..++|..+|.|..+..++...|.++|+|+|.++.+++.|+++.+.. +++++++++..++.. .+++|.|
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~--------~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ--------EEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC--------CCCccEE
Confidence 478999999999999999988888899999999999999998866543 368999988766431 1369999
Q ss_pred EE
Q psy7191 163 IM 164 (413)
Q Consensus 163 Lf 164 (413)
+.
T Consensus 117 ~~ 118 (187)
T PRK00107 117 TS 118 (187)
T ss_pred EE
Confidence 95
No 68
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.55 E-value=0.00044 Score=67.97 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=65.2
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHH
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNI 148 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~ 148 (413)
|++.+++.+....+...++|.++|.|.-+..++...|+.+|+|+|+++.|++.|+++.+. .. ++.++++++.+ .
T Consensus 101 lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~---~ 177 (284)
T TIGR00536 101 LVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE---P 177 (284)
T ss_pred HHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc---c
Confidence 444555555312233689999999999999999988889999999999999999887653 23 69999887632 1
Q ss_pred HHhcCCCCCCccEEEEcCCC
Q psy7191 149 LKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 149 L~~~~~~~~~VDGILfDLGv 168 (413)
+ ....+|.|+.|-.|
T Consensus 178 ~-----~~~~fDlIvsNPPy 192 (284)
T TIGR00536 178 L-----AGQKIDIIVSNPPY 192 (284)
T ss_pred C-----cCCCccEEEECCCC
Confidence 1 11258888877666
No 69
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.55 E-value=0.00028 Score=74.03 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=62.2
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
.+++.++|..+|.|-.+..++...|+++|+|+|+++.|++.|+++.+..+ +++++++++.+.. +.. ...+|.|
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~~----~~~FDLI 323 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MPS----EGKWDII 323 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--ccc----CCCccEE
Confidence 35679999999999999999888888999999999999999998776544 8999998864321 111 1358999
Q ss_pred EEcCCC
Q psy7191 163 IMDVGI 168 (413)
Q Consensus 163 LfDLGv 168 (413)
+.|-.|
T Consensus 324 VSNPPY 329 (423)
T PRK14966 324 VSNPPY 329 (423)
T ss_pred EECCCC
Confidence 976544
No 70
>PRK06202 hypothetical protein; Provisional
Probab=97.54 E-value=0.00064 Score=64.27 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=55.6
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc----CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI----GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNS 158 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~----p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~ 158 (413)
..++..++|..||.|+.+..|++.. ++.+|+|+|.++.+++.|+++... .++.+.......+.. ..+.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~-------~~~~ 129 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVA-------EGER 129 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccc-------cCCC
Confidence 4566799999999999999887643 456999999999999999876532 244444443333321 1246
Q ss_pred ccEEEEcCCC
Q psy7191 159 IDGIIMDVGI 168 (413)
Q Consensus 159 VDGILfDLGv 168 (413)
+|.|+...+.
T Consensus 130 fD~V~~~~~l 139 (232)
T PRK06202 130 FDVVTSNHFL 139 (232)
T ss_pred ccEEEECCee
Confidence 9999987654
No 71
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.54 E-value=0.00032 Score=64.98 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=69.6
Q ss_pred hHHhhhh--hccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-
Q psy7191 56 SLKRLSE--DIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND- 132 (413)
Q Consensus 56 sl~~~~~--n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~- 132 (413)
+|.|..+ +.|.+|..=.+.. +..+ ++..++|..+|+|..+..++...|+++|+|+|.++.+++.+++..+..
T Consensus 16 ~l~~~~~~~~~~~~~~~d~i~~-~~~~----~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~ 90 (181)
T TIGR00138 16 NLTSLKTPEEIWERHILDSLKL-LEYL----DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG 90 (181)
T ss_pred cccccCCHHHHHHHHHHHHHHH-HHhc----CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC
Confidence 4555556 6666665433321 1222 378999999999988888877678899999999999999988765433
Q ss_pred -CCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191 133 -PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 133 -~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD 165 (413)
+++++++++..++. . .+.+|.|+.+
T Consensus 91 ~~~i~~i~~d~~~~~---~-----~~~fD~I~s~ 116 (181)
T TIGR00138 91 LNNVEIVNGRAEDFQ---H-----EEQFDVITSR 116 (181)
T ss_pred CCCeEEEecchhhcc---c-----cCCccEEEeh
Confidence 37999999876641 1 2369999865
No 72
>PTZ00146 fibrillarin; Provisional
Probab=97.53 E-value=0.00048 Score=69.12 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
++++..++|+.+|.|+-|..+++.. +.++|||+|.++.+++...+..+.-+++.++..+......+-. ....||.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~----~~~~vDv 205 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRM----LVPMVDV 205 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhc----ccCCCCE
Confidence 6789999999999999999999987 5799999999987654332222212478888888765332221 1236999
Q ss_pred EEEcC
Q psy7191 162 IIMDV 166 (413)
Q Consensus 162 ILfDL 166 (413)
|+.|.
T Consensus 206 V~~Dv 210 (293)
T PTZ00146 206 IFADV 210 (293)
T ss_pred EEEeC
Confidence 99998
No 73
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.52 E-value=0.00069 Score=66.03 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=65.3
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~ 152 (413)
....++.+. +.++..++|..+|.|+-+..+++.. .++|+|+|.++.+++.|+++....+++.++++++.+.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~------- 111 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK------- 111 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-------
Confidence 466777775 7889999999999999888887654 5799999999999999988765434788888887643
Q ss_pred CCCCCCccEEEE
Q psy7191 153 NNNFNSIDGIIM 164 (413)
Q Consensus 153 ~~~~~~VDGILf 164 (413)
.++.+.+|.|+.
T Consensus 112 ~~~~~~FD~V~s 123 (263)
T PTZ00098 112 DFPENTFDMIYS 123 (263)
T ss_pred CCCCCCeEEEEE
Confidence 222346899886
No 74
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.50 E-value=0.00051 Score=52.90 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=58.1
Q ss_pred EEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191 89 MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 89 ~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDL 166 (413)
++|..+|.|+.+..+++ .+..+++++|.++.++..+++.... ..++.+++.++.+... . ...++|.|+.+.
T Consensus 2 ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~d~i~~~~ 74 (107)
T cd02440 2 VLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----E--ADESFDVIISDP 74 (107)
T ss_pred eEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----c--cCCceEEEEEcc
Confidence 68999999999999988 5668999999999999998743222 2378889988876543 1 124699999988
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
.+..
T Consensus 75 ~~~~ 78 (107)
T cd02440 75 PLHH 78 (107)
T ss_pred ceee
Confidence 8765
No 75
>PHA03411 putative methyltransferase; Provisional
Probab=97.48 E-value=0.001 Score=66.44 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHH
Q psy7191 26 EYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILE 105 (413)
Q Consensus 26 ~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe 105 (413)
+-|++|+-.....+..-+-++.|-+=++|.-=--=+.-.|.+..+|+-.-++ . +.+.+.++|..+|.|.-+..++.
T Consensus 9 ~~l~~~~~~l~~~~~~~~~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~---~-~~~~grVLDLGcGsGilsl~la~ 84 (279)
T PHA03411 9 QKLHDRVMELINSDRPLTYEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTI---D-AHCTGKVLDLCAGIGRLSFCMLH 84 (279)
T ss_pred HHHHHHHHHHHhCCcccccCcHHHHHHhcccccccCceeEcCCHHHHHHHHh---c-cccCCeEEEcCCCCCHHHHHHHH
Confidence 3467777666666555555555555544432210012355556677655433 2 44567999999999999999888
Q ss_pred hcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191 106 NIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 106 ~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS 169 (413)
+.+..+|+|+|+++.+++.+++++ +++.++++++.++. . ...+|.|+.|-.+-
T Consensus 85 r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~---~-----~~kFDlIIsNPPF~ 137 (279)
T PHA03411 85 RCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE---S-----NEKFDVVISNPPFG 137 (279)
T ss_pred hCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc---c-----cCCCcEEEEcCCcc
Confidence 876679999999999999998763 46888998886542 1 13699999887774
No 76
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.45 E-value=0.00041 Score=66.65 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=60.4
Q ss_pred CCCCEEEEEecCCchhHHHHHHh--cCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILEN--IGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNS 158 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~--~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~ 158 (413)
.++..++|..+|.|..+..+++. .|+++|+|+|.++.+++.|+++++.+ . +++++++++.+++ ...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 46789999999999999998885 37899999999999999999887643 2 7999998876542 124
Q ss_pred ccEEEEcCCC
Q psy7191 159 IDGIIMDVGI 168 (413)
Q Consensus 159 VDGILfDLGv 168 (413)
+|.|+..+..
T Consensus 126 ~D~vv~~~~l 135 (247)
T PRK15451 126 ASMVVLNFTL 135 (247)
T ss_pred CCEEehhhHH
Confidence 7888865443
No 77
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.43 E-value=0.00056 Score=64.99 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=58.1
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND-PRLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~-~rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
.++|++++|+-+|-|..|..++...+..+|+|+|..|.|++..++..+ .. .++.+++++.+++.. ...+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-E
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------cccc
Confidence 568999999999999999999986666799999999999999876543 22 379999998776533 1369
Q ss_pred cEEEEcCCCCccCc
Q psy7191 160 DGIIMDVGISDSQA 173 (413)
Q Consensus 160 DGILfDLGvSS~Ql 173 (413)
|.|+++|.-++..+
T Consensus 171 drvim~lp~~~~~f 184 (200)
T PF02475_consen 171 DRVIMNLPESSLEF 184 (200)
T ss_dssp EEEEE--TSSGGGG
T ss_pred CEEEECChHHHHHH
Confidence 99999999888754
No 78
>KOG1122|consensus
Probab=97.41 E-value=0.00023 Score=74.35 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=64.8
Q ss_pred ccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191 79 GLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
.|. |+||..++|+|...||.|++|.....+ |.|||.|....-+..-+.+++..+ +..+.+.+-.++. +-.+.
T Consensus 236 aL~-Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~----~~~~~ 310 (460)
T KOG1122|consen 236 ALD-PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP----EKEFP 310 (460)
T ss_pred ecC-CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc----ccccC
Confidence 454 999999999999999999999998864 999999999998888777766544 4444443333221 11122
Q ss_pred CCCccEEEEcCCCCcc
Q psy7191 156 FNSIDGIIMDVGISDS 171 (413)
Q Consensus 156 ~~~VDGILfDLGvSS~ 171 (413)
++||.||+|..||-.
T Consensus 311 -~~fDRVLLDAPCSGt 325 (460)
T KOG1122|consen 311 -GSFDRVLLDAPCSGT 325 (460)
T ss_pred -cccceeeecCCCCCC
Confidence 379999999999853
No 79
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.40 E-value=0.0007 Score=61.52 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=58.2
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
.+++.++|..+|.|..+..+.+..+ +|+|+|.++.+++.++++.+... ++.+++++.... + .+.+|.|
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~------~~~fD~V 86 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---V------RGKFDVI 86 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---c------CCcccEE
Confidence 3457899999999999999988765 89999999999999988765443 677888776442 1 1368999
Q ss_pred EEcCCC
Q psy7191 163 IMDVGI 168 (413)
Q Consensus 163 LfDLGv 168 (413)
+.|..+
T Consensus 87 i~n~p~ 92 (179)
T TIGR00537 87 LFNPPY 92 (179)
T ss_pred EECCCC
Confidence 987766
No 80
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.40 E-value=0.001 Score=69.43 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=64.7
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHh
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~ 151 (413)
.+++++.+. +.++..++|..+|.|+++..+++.. +++|+|+|+++.+++.|+++..... +++++++++.++.
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~----- 327 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT----- 327 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-----
Confidence 345666665 6778899999999999998887765 6799999999999999987654433 8899998876542
Q ss_pred cCCCCCCccEEEEc
Q psy7191 152 MNNNFNSIDGIIMD 165 (413)
Q Consensus 152 ~~~~~~~VDGILfD 165 (413)
++.+.+|.|+..
T Consensus 328 --~~~~~fD~I~s~ 339 (475)
T PLN02336 328 --YPDNSFDVIYSR 339 (475)
T ss_pred --CCCCCEEEEEEC
Confidence 222469999853
No 81
>KOG2730|consensus
Probab=97.39 E-value=0.00015 Score=70.37 Aligned_cols=81 Identities=23% Similarity=0.226 Sum_probs=62.2
Q ss_pred ccccchHhHHhccCC----CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEec
Q psy7191 68 KYPRTFQTSASGLND----SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYG 140 (413)
Q Consensus 68 H~pvll~evi~~L~~----~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~ 140 (413)
-++|..+.+...+.. .-....+||+-+|+||-|..+..+.| .|||+|+||.-|+.|+.+++-|+ |++|+++
T Consensus 73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G 150 (263)
T KOG2730|consen 73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICG 150 (263)
T ss_pred eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEec
Confidence 345655555555421 11346889999999999999887764 69999999999999999988763 9999999
Q ss_pred CCCChHHHHH
Q psy7191 141 KFSDLPNILK 150 (413)
Q Consensus 141 nFs~l~~~L~ 150 (413)
+|-++..-|+
T Consensus 151 D~ld~~~~lq 160 (263)
T KOG2730|consen 151 DFLDLASKLK 160 (263)
T ss_pred hHHHHHHHHh
Confidence 9987766554
No 82
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.39 E-value=0.0007 Score=63.35 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=66.5
Q ss_pred hHHhhhhhccCCccccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--
Q psy7191 56 SLKRLSEDIYNKKYPRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-- 132 (413)
Q Consensus 56 sl~~~~~n~y~~H~pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-- 132 (413)
.|+++.+..=..|- .+.+.+++.|.. ..++..++|..||.|..+..+++. +.+|+|+|.++++++.|++++...
T Consensus 26 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~ 102 (219)
T TIGR02021 26 PVSRVRQTVREGRA-AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDV 102 (219)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 34444443322233 344555666541 346789999999999999998765 468999999999999998876432
Q ss_pred -CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191 133 -PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 133 -~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf 164 (413)
.++.++++++.+++ +.+|.|+.
T Consensus 103 ~~~i~~~~~d~~~~~----------~~fD~ii~ 125 (219)
T TIGR02021 103 AGNVEFEVNDLLSLC----------GEFDIVVC 125 (219)
T ss_pred CCceEEEECChhhCC----------CCcCEEEE
Confidence 27888888876542 25888875
No 83
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.36 E-value=0.0015 Score=61.42 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=67.5
Q ss_pred cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCCCeEEEecCC
Q psy7191 65 YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDPRLVPVYGKF 142 (413)
Q Consensus 65 y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~rv~~i~~nF 142 (413)
|.+ .|+-.+++...- ..++||..||.|+|..+++...|+..++|+|+....+..+.++.. ..+++.+++++.
T Consensus 3 ~~~-~~~~~~~~f~~~-----~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da 76 (195)
T PF02390_consen 3 YQN-EPLDWQEIFGND-----NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA 76 (195)
T ss_dssp --S-CTTCHHHHHTSC-----CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C
T ss_pred ccc-CccCHHHHcCCC-----CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH
Confidence 445 677777776543 339999999999999999999999999999999999999765543 345999999998
Q ss_pred CCh-HHHHHhcCCCCCCccEEEEcCC
Q psy7191 143 SDL-PNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 143 s~l-~~~L~~~~~~~~~VDGILfDLG 167 (413)
..+ ..++. ++.+|.|.+.+.
T Consensus 77 ~~~l~~~~~-----~~~v~~i~i~FP 97 (195)
T PF02390_consen 77 RELLRRLFP-----PGSVDRIYINFP 97 (195)
T ss_dssp TTHHHHHST-----TTSEEEEEEES-
T ss_pred HHHHhhccc-----CCchheEEEeCC
Confidence 874 43332 357999986654
No 84
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.36 E-value=0.00043 Score=64.02 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=52.7
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCE---------EEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHH
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVK---------VICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILK 150 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~---------Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~ 150 (413)
.+++.+++|-.||.|.=-..-+...++.. ++|+|+|+.+++.|+++++.+ . .+.+.+.+|.++. +
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~- 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP--L- 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--G-
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc--c-
Confidence 77889999999999953322222224434 999999999999999887643 3 7889999999887 2
Q ss_pred hcCCCCCCccEEEEcCCC
Q psy7191 151 NMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 151 ~~~~~~~~VDGILfDLGv 168 (413)
..+.+|.|+.|..|
T Consensus 103 ----~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 103 ----PDGSVDAIVTNPPY 116 (179)
T ss_dssp ----TTSBSCEEEEE--S
T ss_pred ----ccCCCCEEEECcch
Confidence 12469999988877
No 85
>PRK06922 hypothetical protein; Provisional
Probab=97.35 E-value=0.00052 Score=75.46 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
..+++.++|..||+|..+..+.+.+|+++|+|+|+++.+++.|+++.... .++.+++++..+++..+. .+.+|.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fe-----deSFDv 490 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFE-----KESVDT 490 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccC-----CCCEEE
Confidence 34678999999999998999988889999999999999999998765433 378888888766543332 346999
Q ss_pred EEEcC
Q psy7191 162 IIMDV 166 (413)
Q Consensus 162 ILfDL 166 (413)
|++..
T Consensus 491 VVsn~ 495 (677)
T PRK06922 491 IVYSS 495 (677)
T ss_pred EEEch
Confidence 99653
No 86
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.35 E-value=0.00095 Score=65.42 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=68.4
Q ss_pred hHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHH
Q psy7191 75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILK 150 (413)
Q Consensus 75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~ 150 (413)
-++..|. +.||..+|++--|.|.=|.+|+... |.|+||.+|..++..+.|++.++.+ . ++++.+.+..+-. +
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g--~- 106 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG--F- 106 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-----
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc--c-
Confidence 3556665 9999999999999999999999876 8899999999999999999876543 3 7999988864311 1
Q ss_pred hcCCCCCCccEEEEcCCCCccCcc
Q psy7191 151 NMNNNFNSIDGIIMDVGISDSQAN 174 (413)
Q Consensus 151 ~~~~~~~~VDGILfDLGvSS~Qld 174 (413)
..++ ...+|+|++||+=.-.-|+
T Consensus 107 ~~~~-~~~~DavfLDlp~Pw~~i~ 129 (247)
T PF08704_consen 107 DEEL-ESDFDAVFLDLPDPWEAIP 129 (247)
T ss_dssp STT--TTSEEEEEEESSSGGGGHH
T ss_pred cccc-cCcccEEEEeCCCHHHHHH
Confidence 1112 1469999999998766666
No 87
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.35 E-value=0.0012 Score=62.27 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=55.5
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~ 152 (413)
+.+.+..+ .++..++|.-||.|..+..+.+..|.+.++|+|++++|++.|++.. +++.+++++..+ +
T Consensus 34 ~~~~l~~~---~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~------ 100 (204)
T TIGR03587 34 FARALNRL---PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P------ 100 (204)
T ss_pred HHHHHHhc---CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C------
Confidence 34444443 3567899999999999999988878899999999999999998753 345556655433 0
Q ss_pred CCCCCCccEEE
Q psy7191 153 NNNFNSIDGII 163 (413)
Q Consensus 153 ~~~~~~VDGIL 163 (413)
...+.+|.|+
T Consensus 101 -~~~~sfD~V~ 110 (204)
T TIGR03587 101 -FKDNFFDLVL 110 (204)
T ss_pred -CCCCCEEEEE
Confidence 1123577777
No 88
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.34 E-value=0.002 Score=62.19 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=88.5
Q ss_pred HhHHhhhhhccCCccccchHhHHhcc---CCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhc
Q psy7191 55 ASLKRLSEDIYNKKYPRTFQTSASGL---NDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAA 130 (413)
Q Consensus 55 ~sl~~~~~n~y~~H~pvll~evi~~L---~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~ 130 (413)
.-++++-..-+-...|++..|....| ....+.+.++...-+.|.-|..|+..+| +++|+++|+|++..+.|+++++
T Consensus 26 ~~~~~~~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~ 105 (219)
T COG4122 26 ALLAELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA 105 (219)
T ss_pred hHHHHHHHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45678888888999999988877666 2256778999999999988888888888 8999999999999999999887
Q ss_pred CCC---CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccC
Q psy7191 131 NDP---RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQ 172 (413)
Q Consensus 131 ~~~---rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Q 172 (413)
.++ ++.++.+ -+--+.|... ..+++|.|++|-.=+.+.
T Consensus 106 ~ag~~~~i~~~~~--gdal~~l~~~--~~~~fDliFIDadK~~yp 146 (219)
T COG4122 106 EAGVDDRIELLLG--GDALDVLSRL--LDGSFDLVFIDADKADYP 146 (219)
T ss_pred HcCCcceEEEEec--CcHHHHHHhc--cCCCccEEEEeCChhhCH
Confidence 653 7888876 3333455541 235799999998765443
No 89
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.33 E-value=0.001 Score=64.02 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=70.1
Q ss_pred ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCC
Q psy7191 68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFS 143 (413)
Q Consensus 68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs 143 (413)
++|...-+.+..|....+.+.++|...|.|.-+..|+...+ +++|+++|+|+++++.|+++++.. .++++++++..
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 33444444555554455678999999999987888888775 699999999999999999876643 38999999875
Q ss_pred Ch-HHHHHhcCCCCCCccEEEEcCC
Q psy7191 144 DL-PNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 144 ~l-~~~L~~~~~~~~~VDGILfDLG 167 (413)
+. +.+... + ..+.+|.|++|.-
T Consensus 131 ~~L~~l~~~-~-~~~~fD~VfiDa~ 153 (234)
T PLN02781 131 SALDQLLNN-D-PKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHHHhC-C-CCCCCCEEEECCC
Confidence 43 222221 1 1246999998853
No 90
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.32 E-value=0.0008 Score=71.84 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=63.2
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
+..++|..+|.|.-+..++...|+++|+|+|+++.|++.|+++.+.+ +++.++++++-+ .+ ....+|.|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~---~~-----~~~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE---NI-----EKQKFDFI 210 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh---hC-----cCCCccEE
Confidence 46899999999999999999889999999999999999999876533 378999888532 11 12369999
Q ss_pred EEcCCCCcc
Q psy7191 163 IMDVGISDS 171 (413)
Q Consensus 163 LfDLGvSS~ 171 (413)
+.|..|-..
T Consensus 211 vsNPPYi~~ 219 (506)
T PRK01544 211 VSNPPYISH 219 (506)
T ss_pred EECCCCCCc
Confidence 999988543
No 91
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00085 Score=66.51 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=66.6
Q ss_pred EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecC-CCChHHHHHhcCCCCCCccEEEE
Q psy7191 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGK-FSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~n-Fs~l~~~L~~~~~~~~~VDGILf 164 (413)
.++|.+.|.|==+.+++...|++.|+|.|++|.|++.|+++.+.. .++.+++++ |+.+. +++|.|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~----------~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR----------GKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC----------CceeEEEe
Confidence 799999999999999999999999999999999999999876654 366666654 44432 36999999
Q ss_pred cCCCCccCccCCCCccCCCCCCCcccCCC
Q psy7191 165 DVGISDSQANSTRGFKPDSNSLLDMRMSQ 193 (413)
Q Consensus 165 DLGvSS~Qld~~RGFSf~~dgPLDMRMd~ 193 (413)
|=.| |..+ .....|-++|.+|
T Consensus 183 NPPY----ip~~----~~~~~~~~~~~EP 203 (280)
T COG2890 183 NPPY----IPAE----DPELLPEVVRYEP 203 (280)
T ss_pred CCCC----CCCc----ccccChhhhccCH
Confidence 9888 5422 1223455666666
No 92
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.29 E-value=0.0012 Score=61.50 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=59.1
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHh
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~ 151 (413)
.++++.+. ..+++.++|..+|.|.++..++++ ..+|+|+|.++.|++.++++.+.. .+++++..++.+++
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~----- 91 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT----- 91 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-----
Confidence 34555665 556789999999999999998875 468999999999999998765432 35777777655431
Q ss_pred cCCCCCCccEEEEc
Q psy7191 152 MNNNFNSIDGIIMD 165 (413)
Q Consensus 152 ~~~~~~~VDGILfD 165 (413)
+ .+.+|.|+.-
T Consensus 92 --~-~~~fD~I~~~ 102 (197)
T PRK11207 92 --F-DGEYDFILST 102 (197)
T ss_pred --c-CCCcCEEEEe
Confidence 1 1358888754
No 93
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.23 E-value=0.0016 Score=61.58 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=65.4
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN 147 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~ 147 (413)
-.+.+.+++.|....++..++|+.+|.|.=+...|.+. ..+|+++|+|+.|++.++++++.. .++.++++++. +
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~---~ 113 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL---S 113 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH---H
Confidence 34445556666423467899999999998887666664 369999999999999998876543 37888888753 3
Q ss_pred HHHhcCCCCCCccEEEEcCCC
Q psy7191 148 ILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 148 ~L~~~~~~~~~VDGILfDLGv 168 (413)
++.... ..+|.|++|-.|
T Consensus 114 ~l~~~~---~~fDlV~~DPPy 131 (199)
T PRK10909 114 FLAQPG---TPHNVVFVDPPF 131 (199)
T ss_pred HHhhcC---CCceEEEECCCC
Confidence 343221 258999977665
No 94
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.23 E-value=0.0016 Score=59.79 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=57.6
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHH
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NIL 149 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L 149 (413)
.|+.+.+..+.+++.++|..+|+||-|..++... +.++|+|+|+++.+ ..+++.+++.++.+.. .+.
T Consensus 21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHH
Confidence 3444444446789999999999999999999987 56899999999864 1246778888876532 222
Q ss_pred HhcCCCCCCccEEEEcC
Q psy7191 150 KNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 150 ~~~~~~~~~VDGILfDL 166 (413)
...+ .+++|.|+.|.
T Consensus 92 ~~~~--~~~~D~V~~~~ 106 (188)
T TIGR00438 92 ERVG--DDKVDVVMSDA 106 (188)
T ss_pred HHhC--CCCccEEEcCC
Confidence 2221 23688888553
No 95
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.21 E-value=0.0016 Score=62.89 Aligned_cols=77 Identities=27% Similarity=0.283 Sum_probs=58.9
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
+.++..++|..+|+|..+..++... +.++|+|+|+++.+++.|+++... +++++++.+++.+++ +..+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-------~~~~~f 147 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-------VADNSV 147 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-------CCCCce
Confidence 6789999999999986666666655 568999999999999999886543 348888888875542 223469
Q ss_pred cEEEEcC
Q psy7191 160 DGIIMDV 166 (413)
Q Consensus 160 DGILfDL 166 (413)
|.|+.+.
T Consensus 148 D~Vi~~~ 154 (272)
T PRK11873 148 DVIISNC 154 (272)
T ss_pred eEEEEcC
Confidence 9998764
No 96
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.19 E-value=0.00086 Score=68.75 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=56.1
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
.++..++|+.+|.|..+..++.. ..+|+|+|+++.|++.|+++.+.. .++.++++++.+. +... ...+|.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~---~~~~---~~~~D~ 303 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKF---ATAQ---MSAPEL 303 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH---HHhc---CCCCCE
Confidence 45689999999999999888754 468999999999999998876433 3788998887543 3221 124899
Q ss_pred EEEc
Q psy7191 162 IIMD 165 (413)
Q Consensus 162 ILfD 165 (413)
|++|
T Consensus 304 vi~D 307 (374)
T TIGR02085 304 VLVN 307 (374)
T ss_pred EEEC
Confidence 9955
No 97
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.15 E-value=0.0016 Score=64.44 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=57.7
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHH
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNI 148 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~ 148 (413)
+++-+++.+. ++||..++|..||.||=+..+.+++ +++|.|+..+++-.+.++++.+.. +++++...+|.+++.
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence 4556678886 9999999999999999999999998 689999999999999998876543 389999999876642
Q ss_pred HHhcCCCCCCccEEE
Q psy7191 149 LKNMNNNFNSIDGII 163 (413)
Q Consensus 149 L~~~~~~~~~VDGIL 163 (413)
++|.|+
T Consensus 127 ---------~fD~Iv 132 (273)
T PF02353_consen 127 ---------KFDRIV 132 (273)
T ss_dssp ---------S-SEEE
T ss_pred ---------CCCEEE
Confidence 488876
No 98
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.11 E-value=0.0024 Score=62.15 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=54.5
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCC---CEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGN---VKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~---g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
.++..++|.-+|.|.++..+.+.+|. +.|+|+|+++.|++.|+++ ++++.++.++..+++ +..+.+|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~---~~~~~~~~~d~~~lp-------~~~~sfD 153 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR---YPQVTFCVASSHRLP-------FADQSLD 153 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---CCCCeEEEeecccCC-------CcCCcee
Confidence 45578999999999999999988763 3799999999999998765 346777777766543 2234688
Q ss_pred EEE
Q psy7191 161 GII 163 (413)
Q Consensus 161 GIL 163 (413)
.|+
T Consensus 154 ~I~ 156 (272)
T PRK11088 154 AII 156 (272)
T ss_pred EEE
Confidence 887
No 99
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.11 E-value=0.0036 Score=49.07 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=50.0
Q ss_pred EEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 90 VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD 165 (413)
+|.-+|.|-.+..+++. +...|+|+|.++.+++.++++... .++.++++++.+++ ++.+.+|.|+..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-------~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-------FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-------S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-------cccccccccccc
Confidence 68899999777777766 788999999999999999987653 35668899988772 234579999754
No 100
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0032 Score=60.50 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=77.6
Q ss_pred cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChH
Q psy7191 69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLP 146 (413)
Q Consensus 69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~ 146 (413)
-|-|.--.++.|. ++++..+++.-.|.| +..|+|.++- ++|+++|++++-.+.|+++++.. .++++++++=+.
T Consensus 57 ~P~~vA~m~~~L~-~~~g~~VLEIGtGsG-Y~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~-- 131 (209)
T COG2518 57 APHMVARMLQLLE-LKPGDRVLEIGTGSG-YQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK-- 131 (209)
T ss_pred CcHHHHHHHHHhC-CCCCCeEEEECCCch-HHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc--
Confidence 4778899999997 999999999999999 5556666653 39999999999999999988754 479999887653
Q ss_pred HHHHhcCCCC-CCccEEEEcCCCCcc------Ccc-CCC
Q psy7191 147 NILKNMNNNF-NSIDGIIMDVGISDS------QAN-STR 177 (413)
Q Consensus 147 ~~L~~~~~~~-~~VDGILfDLGvSS~------Qld-~~R 177 (413)
|++. .++|.|++..++... ||. ..|
T Consensus 132 ------G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGr 164 (209)
T COG2518 132 ------GWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGR 164 (209)
T ss_pred ------CCCCCCCcCEEEEeeccCCCCHHHHHhcccCCE
Confidence 3322 469999999998764 666 544
No 101
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.09 E-value=0.0027 Score=63.12 Aligned_cols=67 Identities=13% Similarity=0.328 Sum_probs=55.0
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC-CC--CeEEEecCCCChHHHHH
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN-DP--RLVPVYGKFSDLPNILK 150 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~-~~--rv~~i~~nFs~l~~~L~ 150 (413)
.++..+||.-+|+|-.|..|++.++ ..+++|+|+++++++.|.+++.. ++ ++.+++++|.+...++.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 3567999999999999999999986 57999999999999998776543 44 67789999987544443
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.07 E-value=0.0017 Score=63.80 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=66.1
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
+...+.++|.+.|+|.=+.++.++.+++++.|+++|+++.+.|++..+. .. |++++++++.++.+... ..++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----cccc
Confidence 3447899999999999888888888889999999999999999886653 33 99999999887655443 2358
Q ss_pred cEEEEcCCC
Q psy7191 160 DGIIMDVGI 168 (413)
Q Consensus 160 DGILfDLGv 168 (413)
|.|+.|=.|
T Consensus 117 D~Ii~NPPy 125 (248)
T COG4123 117 DLIICNPPY 125 (248)
T ss_pred CEEEeCCCC
Confidence 999977666
No 103
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0013 Score=69.16 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=68.3
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN 147 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~ 147 (413)
..|++.+++.+. ..+++.++|+.||.|.-|..+..+ ..+|+|+++.++|++.|+++.+.. .+++++.++=..+..
T Consensus 279 ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 368899999997 778899999999999999988744 368999999999999999876643 378888776544433
Q ss_pred HHHhcCCCCCCccEEEEc
Q psy7191 148 ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 148 ~L~~~~~~~~~VDGILfD 165 (413)
-+.+ + ..+|.||+|
T Consensus 356 ~~~~-~---~~~d~VvvD 369 (432)
T COG2265 356 AWWE-G---YKPDVVVVD 369 (432)
T ss_pred hccc-c---CCCCEEEEC
Confidence 2221 1 258999944
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.05 E-value=0.0032 Score=64.22 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=58.9
Q ss_pred HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCC
Q psy7191 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
++.|. ....+.++|.-||.|..+..+++..|..+|+++|+++.|++.|++.++..+ ...++.++... . +
T Consensus 189 l~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~---~-----~- 258 (342)
T PRK09489 189 LSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS---D-----I- 258 (342)
T ss_pred HHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc---c-----c-
Confidence 44443 344568999999999999999999898999999999999999988765432 44555554321 1 1
Q ss_pred CCCccEEEEcCC
Q psy7191 156 FNSIDGIIMDVG 167 (413)
Q Consensus 156 ~~~VDGILfDLG 167 (413)
.+.+|.|+.|..
T Consensus 259 ~~~fDlIvsNPP 270 (342)
T PRK09489 259 KGRFDMIISNPP 270 (342)
T ss_pred CCCccEEEECCC
Confidence 236888886543
No 105
>PRK05785 hypothetical protein; Provisional
Probab=97.04 E-value=0.0024 Score=61.05 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=97.6
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf 164 (413)
+++.++|..+|+|-.+..+.+.. ++.|+|+|.++++++.|++.. ..+++++.+++ ++.+++|.|+.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-------~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-------FRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-------CCCCCEEEEEe
Confidence 46899999999998888888776 579999999999999987642 23566665442 33457999998
Q ss_pred cCCCCccCcc-CCCCccCC----CC--CCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchHHH-HHHHHHHHHcc
Q psy7191 165 DVGISDSQAN-STRGFKPD----SN--SLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQ-IARAIIETRYT 236 (413)
Q Consensus 165 DLGvSS~Qld-~~RGFSf~----~d--gPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~r-IA~aIv~~R~~ 236 (413)
-+|+ ++++ +++.++=. +. +-|++- .|.......+.+-|...-+-.|-+-++..+.+.+ +...| +
T Consensus 117 ~~~l--~~~~d~~~~l~e~~RvLkp~~~ile~~-~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si-~---- 188 (226)
T PRK05785 117 SFAL--HASDNIEKVIAEFTRVSRKQVGFIAMG-KPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIY-E---- 188 (226)
T ss_pred cChh--hccCCHHHHHHHHHHHhcCceEEEEeC-CCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-H----
Confidence 7776 4555 66655422 11 112221 1122234566677777777777777777666653 34333 2
Q ss_pred CCCCCCHHHHHHHHHhhc
Q psy7191 237 FKKLERTRDLNELVASVS 254 (413)
Q Consensus 237 ~~~i~TT~eL~~iI~~~~ 254 (413)
.+.+..+|.++++++.
T Consensus 189 --~f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 189 --RLPTNSFHREIFEKYA 204 (226)
T ss_pred --HCCCHHHHHHHHHHHh
Confidence 4677899999999863
No 106
>PRK04457 spermidine synthase; Provisional
Probab=97.02 E-value=0.0023 Score=62.65 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=61.2
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
+...++|.-+|+|.-+..+++..|.++|+++|+||++++.|++.... . +|+++++++..+ ++... ..++|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~---~l~~~---~~~yD~ 139 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE---YIAVH---RHSTDV 139 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH---HHHhC---CCCCCE
Confidence 35678999999999888999988999999999999999999986542 2 489999887653 44432 246999
Q ss_pred EEEcC
Q psy7191 162 IIMDV 166 (413)
Q Consensus 162 ILfDL 166 (413)
|++|.
T Consensus 140 I~~D~ 144 (262)
T PRK04457 140 ILVDG 144 (262)
T ss_pred EEEeC
Confidence 99984
No 107
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.01 E-value=0.0039 Score=57.94 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=45.7
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA 130 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~ 130 (413)
..+++++.+. +.+++.++|.-+|.|..+..+.++ ...|+|+|.++.|++.++++.+
T Consensus 18 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~ 73 (195)
T TIGR00477 18 THSAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKA 73 (195)
T ss_pred chHHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHH
Confidence 3467777775 566789999999999888888764 4689999999999999877654
No 108
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.01 E-value=0.0036 Score=57.73 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=60.0
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf 164 (413)
....++|..+|.|..+..+++..|..+++|+|.++.+++.+++... +++.++.+++.++. ...+.+|.|+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-------~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-------LEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-------CCCCceeEEEE
Confidence 3478999999999999999999888899999999999999887654 37788888776542 12346999997
Q ss_pred cCCC
Q psy7191 165 DVGI 168 (413)
Q Consensus 165 DLGv 168 (413)
+...
T Consensus 105 ~~~l 108 (240)
T TIGR02072 105 NLAL 108 (240)
T ss_pred hhhh
Confidence 6543
No 109
>PLN02476 O-methyltransferase
Probab=96.98 E-value=0.0077 Score=60.11 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=69.0
Q ss_pred cccchHhHHhcc---CCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecC
Q psy7191 69 YPRTFQTSASGL---NDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGK 141 (413)
Q Consensus 69 ~pvll~evi~~L---~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~n 141 (413)
.|.+-.+....| ....+.+.+++...|.|.=|..++..+| +++|+++|+|+++.+.|++.++.+ . +++++.++
T Consensus 99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd 178 (278)
T PLN02476 99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL 178 (278)
T ss_pred ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 444444444433 3245678999999999988888888775 689999999999999999877654 3 89999988
Q ss_pred CCCh-HHHHHhcCCCCCCccEEEEcCC
Q psy7191 142 FSDL-PNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 142 Fs~l-~~~L~~~~~~~~~VDGILfDLG 167 (413)
..+. +++..+ + ..+.+|.|++|..
T Consensus 179 A~e~L~~l~~~-~-~~~~FD~VFIDa~ 203 (278)
T PLN02476 179 AAESLKSMIQN-G-EGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHHHhc-c-cCCCCCEEEECCC
Confidence 6542 222211 1 1246999998765
No 110
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.98 E-value=0.0045 Score=64.15 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=58.9
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-----CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-----PRLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-----~rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
.++.++|..||+|--+..++++.|..+|+++|+++.|++.|+++.+.. .++.++.++.-. ++...++
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~--------~~~~~~f 299 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS--------GVEPFRF 299 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc--------cCCCCCE
Confidence 357899999999999999999999999999999999999998865422 267777766421 1112369
Q ss_pred cEEEEcCCC
Q psy7191 160 DGIIMDVGI 168 (413)
Q Consensus 160 DGILfDLGv 168 (413)
|.|+.|-.+
T Consensus 300 DlIlsNPPf 308 (378)
T PRK15001 300 NAVLCNPPF 308 (378)
T ss_pred EEEEECcCc
Confidence 999977665
No 111
>PLN03075 nicotianamine synthase; Provisional
Probab=96.96 E-value=0.0021 Score=64.70 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=74.1
Q ss_pred HHhhhhhccCCccccchHhHHhccCC--CCCCCEEEEEecCCchhHHHHHHh--cCCCEEEEEeCCHHHHHHHHhhhcC-
Q psy7191 57 LKRLSEDIYNKKYPRTFQTSASGLND--SSDDVTMIDMTYGDGNHTRLILEN--IGNVKVICLDRDKESFEKAKTLAAN- 131 (413)
Q Consensus 57 l~~~~~n~y~~H~pvll~evi~~L~~--~~~~~i~VDaTlG~GGHS~aILe~--~p~g~Via~DrD~~Al~~Ak~ll~~- 131 (413)
++.|.+=-|+.-|=-|..--.+.|.. ..+...++|.-+|.||-|..++.+ .|+++++|+|+|++|++.|++....
T Consensus 93 ~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~ 172 (296)
T PLN03075 93 LDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD 172 (296)
T ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc
Confidence 44455556666665555555555421 336789999999999998888874 4899999999999999999987732
Q ss_pred --C-CCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191 132 --D-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 132 --~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD 165 (413)
. ++++|..+|-.++... .+.+|.|+.+
T Consensus 173 ~gL~~rV~F~~~Da~~~~~~-------l~~FDlVF~~ 202 (296)
T PLN03075 173 PDLSKRMFFHTADVMDVTES-------LKEYDVVFLA 202 (296)
T ss_pred cCccCCcEEEECchhhcccc-------cCCcCEEEEe
Confidence 2 3899999887664211 1369999988
No 112
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.93 E-value=0.0046 Score=61.10 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
.++..++|..+|.|..+.+++. .+..+|+|+|+|+.|++.|+++.... . ++.++.++... . ..+++|
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~------~~~~fD 227 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---P------IEGKAD 227 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---c------cCCCce
Confidence 5678999999999988877764 45569999999999999998876432 2 55555544111 1 123689
Q ss_pred EEEEcC
Q psy7191 161 GIIMDV 166 (413)
Q Consensus 161 GILfDL 166 (413)
.|++|+
T Consensus 228 lVvan~ 233 (288)
T TIGR00406 228 VIVANI 233 (288)
T ss_pred EEEEec
Confidence 998764
No 113
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.91 E-value=0.0034 Score=61.98 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=57.8
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCC
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSD 144 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~ 144 (413)
.+.+++.+. ..++..++|..+|.|..+..+++++|+++++++|. |.+++.++++.+.. +|++++.++|-.
T Consensus 138 ~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 138 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred HHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence 444556665 67888999999999999999999999999999998 78999988765543 389999998754
No 114
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.90 E-value=0.0036 Score=61.57 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=56.6
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHh
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~ 151 (413)
..++++.+. ..+++.++|.-||.|..+..+++. +.+|+|+|.++.|++.++++.+... ++.+...+.....
T Consensus 109 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~----- 180 (287)
T PRK12335 109 HSEVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS----- 180 (287)
T ss_pred cHHHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-----
Confidence 455566554 334569999999999999888764 4799999999999999887654322 5666655543321
Q ss_pred cCCCCCCccEEEEc
Q psy7191 152 MNNNFNSIDGIIMD 165 (413)
Q Consensus 152 ~~~~~~~VDGILfD 165 (413)
+ .+.+|.|+.-
T Consensus 181 --~-~~~fD~I~~~ 191 (287)
T PRK12335 181 --I-QEEYDFILST 191 (287)
T ss_pred --c-cCCccEEEEc
Confidence 1 2357877643
No 115
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0035 Score=59.66 Aligned_cols=84 Identities=26% Similarity=0.361 Sum_probs=61.0
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
.-.|..++|+.+|+| ..+|-..+ .-.+|+|+|+||+|++.++++..... ++.++.++-+.+. ..+|
T Consensus 43 ~l~g~~V~DlG~GTG--~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----------~~~d 110 (198)
T COG2263 43 DLEGKTVLDLGAGTG--ILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----------GKFD 110 (198)
T ss_pred CcCCCEEEEcCCCcC--HHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----------Cccc
Confidence 345778999999999 55555444 44699999999999999998766544 8999988877652 3588
Q ss_pred EEEEcCCCCccCcc-CCCCc
Q psy7191 161 GIIMDVGISDSQAN-STRGF 179 (413)
Q Consensus 161 GILfDLGvSS~Qld-~~RGF 179 (413)
-+++|=..-+ |.. ++|=|
T Consensus 111 tvimNPPFG~-~~rhaDr~F 129 (198)
T COG2263 111 TVIMNPPFGS-QRRHADRPF 129 (198)
T ss_pred eEEECCCCcc-ccccCCHHH
Confidence 8887765533 244 55544
No 116
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.89 E-value=0.0016 Score=66.34 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=50.3
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCC
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKF 142 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nF 142 (413)
.|++.+++.+. +.++ .++|+-+|.|..|..+.+.. .+|+|++.++.|++.|++.++. ..++++++++-
T Consensus 184 ~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 184 KLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 46777888886 5555 78999999999999987764 5899999999999999886653 34889887653
No 117
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.85 E-value=0.0051 Score=62.16 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=57.8
Q ss_pred cchHhHHhccCCC--CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-------CCeEEEecC
Q psy7191 71 RTFQTSASGLNDS--SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-------PRLVPVYGK 141 (413)
Q Consensus 71 vll~evi~~L~~~--~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-------~rv~~i~~n 141 (413)
.+++.+++.+... .++..++|..+|.|.-+..+++. +.+|+|+|+++.+++.|+++.+.. .++.+...+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 4467777777411 25779999999999988888875 468999999999999998875431 245666655
Q ss_pred CCChHHHHHhcCCCCCCccEEE
Q psy7191 142 FSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 142 Fs~l~~~L~~~~~~~~~VDGIL 163 (413)
...+ .+.+|.|+
T Consensus 206 l~~l----------~~~fD~Vv 217 (315)
T PLN02585 206 LESL----------SGKYDTVT 217 (315)
T ss_pred hhhc----------CCCcCEEE
Confidence 4322 13578776
No 118
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.0054 Score=61.41 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=60.3
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChH
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLP 146 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~ 146 (413)
+.+++.|. ++||..++|.-||.||=+....+++ +++|+|++.+++..+.++++... .+ +++++..++.++.
T Consensus 62 ~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 62 DLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred HHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc
Confidence 45677786 9999999999999999999998888 78999999999999999886543 34 7888888877764
No 119
>PRK10742 putative methyltransferase; Provisional
Probab=96.80 E-value=0.0033 Score=61.94 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=61.6
Q ss_pred HHhccCCCCCCC--EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC----------C-CCeEEEecCC
Q psy7191 76 SASGLNDSSDDV--TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN----------D-PRLVPVYGKF 142 (413)
Q Consensus 76 vi~~L~~~~~~~--i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~----------~-~rv~~i~~nF 142 (413)
++.++. +++|. .++|||+|.|..+..++.. +++|++++++|.+....++.++. . .|+++++++.
T Consensus 78 l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 345554 66777 8999999999888888766 67899999999988876654432 1 3677777765
Q ss_pred CChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191 143 SDLPNILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 143 s~l~~~L~~~~~~~~~VDGILfDLGvS 169 (413)
.++|.... ..+|.|.+|=-|.
T Consensus 155 ---~~~L~~~~---~~fDVVYlDPMfp 175 (250)
T PRK10742 155 ---LTALTDIT---PRPQVVYLDPMFP 175 (250)
T ss_pred ---HHHHhhCC---CCCcEEEECCCCC
Confidence 35565532 2699999887663
No 120
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.79 E-value=0.008 Score=55.92 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=59.6
Q ss_pred chHhHHhccCC--CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChH
Q psy7191 72 TFQTSASGLND--SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLP 146 (413)
Q Consensus 72 ll~evi~~L~~--~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~ 146 (413)
+.+.+++.+.. ..++..++|..+|.|.-+..+++.. ..|+|+|.++.+++.|+++.... .++.++.+++...
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~- 124 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL- 124 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-
Confidence 34555666541 2467799999999999999988764 46999999999999998865432 3788888774321
Q ss_pred HHHHhcCCCCCCccEEEEc
Q psy7191 147 NILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 147 ~~L~~~~~~~~~VDGILfD 165 (413)
.+.+|.|+..
T Consensus 125 ---------~~~fD~v~~~ 134 (230)
T PRK07580 125 ---------LGRFDTVVCL 134 (230)
T ss_pred ---------cCCcCEEEEc
Confidence 1358888754
No 121
>PRK00811 spermidine synthase; Provisional
Probab=96.78 E-value=0.0056 Score=60.52 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=59.7
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-------CCCeEEEecCCCChHHHHHhcCCCCC
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-------DPRLVPVYGKFSDLPNILKNMNNNFN 157 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-------~~rv~~i~~nFs~l~~~L~~~~~~~~ 157 (413)
+.+.++|+-+|.|+-+..+|+..+..+|.++|+|+++++.|++.+.. .+|++++.++... ++... .+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~---~l~~~---~~ 149 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK---FVAET---EN 149 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH---HHhhC---CC
Confidence 34688999999999999999764457999999999999999886532 2489999887543 45432 34
Q ss_pred CccEEEEcC
Q psy7191 158 SIDGIIMDV 166 (413)
Q Consensus 158 ~VDGILfDL 166 (413)
++|.|+.|+
T Consensus 150 ~yDvIi~D~ 158 (283)
T PRK00811 150 SFDVIIVDS 158 (283)
T ss_pred cccEEEECC
Confidence 799999986
No 122
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.74 E-value=0.007 Score=62.52 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=58.3
Q ss_pred hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCC
Q psy7191 75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNN 154 (413)
Q Consensus 75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~ 154 (413)
.+++.+. ++++..++|..+|.|+-+..+.+.. +++|+|+|.++++++.|+++.+.. .+++...++..+
T Consensus 158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l--------- 225 (383)
T PRK11705 158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL--------- 225 (383)
T ss_pred HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc---------
Confidence 3556665 7889999999999999998887765 579999999999999998876432 467777666433
Q ss_pred CCCCccEEE
Q psy7191 155 NFNSIDGII 163 (413)
Q Consensus 155 ~~~~VDGIL 163 (413)
.+.+|.|+
T Consensus 226 -~~~fD~Iv 233 (383)
T PRK11705 226 -NGQFDRIV 233 (383)
T ss_pred -CCCCCEEE
Confidence 13588876
No 123
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.69 E-value=0.0084 Score=58.76 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=75.8
Q ss_pred hHHhhhhhccCCccccch--HhHHh---ccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhh
Q psy7191 56 SLKRLSEDIYNKKYPRTF--QTSAS---GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 56 sl~~~~~n~y~~H~pvll--~evi~---~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll 129 (413)
.|+.+.......+.|.|. .+... .|....+.+.++...-+.|.=|..|+..+| +|+|+++|+|++..+.|++.+
T Consensus 45 ~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~ 124 (247)
T PLN02589 45 SMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI 124 (247)
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 456666666666778764 23333 333234457899999999977777877775 799999999999999999876
Q ss_pred cCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 130 AND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 130 ~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
+.. .+++++.++..+.-.-|...+-..+.+|.|++|--
T Consensus 125 ~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 125 QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 543 39999999865532222111111247999998754
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.65 E-value=0.0086 Score=62.58 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=61.3
Q ss_pred hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCC
Q psy7191 75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNN 154 (413)
Q Consensus 75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~ 154 (413)
.+++.+. +.+++.++|+.+|.|.++..+.+.. .+|+|+|.++.+++.+++.....+++.+++++..... ...
T Consensus 28 ~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~-----~~~ 99 (475)
T PLN02336 28 EILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPD-----LNI 99 (475)
T ss_pred HHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccc-----cCC
Confidence 3344554 5567899999999999999988764 5899999999999987654333357888888775321 112
Q ss_pred CCCCccEEEEcCCC
Q psy7191 155 NFNSIDGIIMDVGI 168 (413)
Q Consensus 155 ~~~~VDGILfDLGv 168 (413)
+.+.+|.|+....+
T Consensus 100 ~~~~fD~I~~~~~l 113 (475)
T PLN02336 100 SDGSVDLIFSNWLL 113 (475)
T ss_pred CCCCEEEEehhhhH
Confidence 23468888876644
No 125
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.64 E-value=0.0098 Score=56.70 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=57.5
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~ 152 (413)
.+.+++.|. ..+++.++|..||.|..+..+.+. ..+|+|+|.++.+++.++++.. ...+++++...++
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~------ 98 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP------ 98 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc------
Confidence 344455554 445788999999999888877653 4789999999999999987642 2345667665542
Q ss_pred CCCCCCccEEEEcCC
Q psy7191 153 NNNFNSIDGIIMDVG 167 (413)
Q Consensus 153 ~~~~~~VDGILfDLG 167 (413)
+..+.+|.|+.++.
T Consensus 99 -~~~~~fD~V~s~~~ 112 (251)
T PRK10258 99 -LATATFDLAWSNLA 112 (251)
T ss_pred -CCCCcEEEEEECch
Confidence 22246888886543
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0087 Score=59.13 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=89.8
Q ss_pred cccccCccHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecC
Q psy7191 16 LEEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYG 95 (413)
Q Consensus 16 ~~~~~grdl~~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG 95 (413)
.++-+|.+-|+.|+... |-++-+-.+ ..-..+.+++|=..=.|-+-. .-++..+. +.||..++|+-.|
T Consensus 37 ~~~vigk~~G~~i~s~~------G~~f~vl~p-~~~d~~~~~~R~tQiIyPKD~----~~I~~~~g-i~pg~rVlEAGtG 104 (256)
T COG2519 37 HDEVIGKPYGEVIKSHL------GVKFYVLKP-TPEDYLLSMKRRTQIIYPKDA----GYIVARLG-ISPGSRVLEAGTG 104 (256)
T ss_pred hhhhcCCCCCceEEeeC------CceEEEeCC-CHHHHHHhCcCCCceecCCCH----HHHHHHcC-CCCCCEEEEcccC
Confidence 45666666676666544 333333333 223334445554444443332 33455565 8899999999999
Q ss_pred CchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 96 DGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 96 ~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
.|-=|..|+... |.|+|+.+|++++-.+.|++++..+ . ++++..++..+- .. ...||+|++|+.=
T Consensus 105 SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~---~~-----~~~vDav~LDmp~ 173 (256)
T COG2519 105 SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG---ID-----EEDVDAVFLDLPD 173 (256)
T ss_pred chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc---cc-----ccccCEEEEcCCC
Confidence 999999998765 7899999999999999999887653 3 688887665543 21 2369999988764
No 127
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.62 E-value=0.0079 Score=57.02 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=48.7
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD 144 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~ 144 (413)
.+|++++. .-+.+.++|..+|.|.+|..+.++ +-.|.|+|+++.|++.++++.+..+ .++....++.+
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~ 88 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND 88 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh
Confidence 45666665 445789999999999999999887 4579999999999999876554333 46666666544
No 128
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.62 E-value=0.0081 Score=61.47 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=54.0
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCC
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSD 144 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~ 144 (413)
|++.+.+.+. .. ++.++|+-+|.|.-|.++.... .+|+|+|.++.|++.|+++.+. ..++++++++..+
T Consensus 195 l~~~v~~~~~-~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 195 MLEWALDATK-GS-KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHhh-cC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 6677777664 33 3579999999999999777664 4899999999999999887543 2378899888654
No 129
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.60 E-value=0.0088 Score=57.72 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=38.6
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN 131 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~ 131 (413)
..++..++|..+|.|..+.++.. .+..+|+|+|+|+.+++.|+++.+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH
Confidence 35788999999999987776554 4445799999999999999887543
No 130
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.57 E-value=0.0093 Score=55.58 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=54.2
Q ss_pred EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL 163 (413)
.++|..+|.|+.+..+++.+|++.|+|+|.++++++.++++.+. . +++.++..++.... + .+.+|.|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~------~~~fD~I~ 72 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F------PDTYDLVF 72 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C------CCCCCEee
Confidence 57999999999999999998889999999999999999887643 2 37888888774431 1 13578777
No 131
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.57 E-value=0.008 Score=58.53 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=68.5
Q ss_pred hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191 63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY 139 (413)
Q Consensus 63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~ 139 (413)
..|+||+ |-+.+.+++.+. +.++..+||.--|.|--|.+|++.. .+|++++.|+...+.-+++....+++++++
T Consensus 6 k~~gQnFL~~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 6 KSLGQNFLVDPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp CGCTSSEEEHHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred CCCCcCeeCCHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeee
Confidence 4567776 457788889887 8889999999999999999999987 789999999999988877765556999999
Q ss_pred cCCCChHH
Q psy7191 140 GKFSDLPN 147 (413)
Q Consensus 140 ~nFs~l~~ 147 (413)
++|-.++.
T Consensus 83 ~D~l~~~~ 90 (262)
T PF00398_consen 83 GDFLKWDL 90 (262)
T ss_dssp S-TTTSCG
T ss_pred cchhcccc
Confidence 99987653
No 132
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.56 E-value=0.011 Score=60.63 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=63.8
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK 150 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~ 150 (413)
.+.+.+++.+.-..++..++|..+|.|.-+..+++..+...|+|+|.++.+++.|+++.. ..++.+++++..++.
T Consensus 99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp---- 173 (340)
T PLN02490 99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP---- 173 (340)
T ss_pred HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC----
Confidence 344455555431246789999999999988888888877899999999999999987643 246777777765432
Q ss_pred hcCCCCCCccEEEEcC
Q psy7191 151 NMNNNFNSIDGIIMDV 166 (413)
Q Consensus 151 ~~~~~~~~VDGILfDL 166 (413)
+..+.+|.|+...
T Consensus 174 ---~~~~sFDvVIs~~ 186 (340)
T PLN02490 174 ---FPTDYADRYVSAG 186 (340)
T ss_pred ---CCCCceeEEEEcC
Confidence 2234689888643
No 133
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.55 E-value=0.008 Score=60.65 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=57.5
Q ss_pred hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh--h-cCCCCeEEEecCCCChHHHHHh
Q psy7191 75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL--A-ANDPRLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l--l-~~~~rv~~i~~nFs~l~~~L~~ 151 (413)
.++..|. +.+++.++|..||.|.|+..+++..+ ..|+|+|.++.++..++.. . ....++.++.+++.+++.
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---- 186 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---- 186 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----
Confidence 3344554 55688999999999999999998754 3699999999988764332 1 112378888888766532
Q ss_pred cCCCCCCccEEEE
Q psy7191 152 MNNNFNSIDGIIM 164 (413)
Q Consensus 152 ~~~~~~~VDGILf 164 (413)
.+.+|.|+.
T Consensus 187 ----~~~FD~V~s 195 (322)
T PRK15068 187 ----LKAFDTVFS 195 (322)
T ss_pred ----cCCcCEEEE
Confidence 236898884
No 134
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.45 E-value=0.0061 Score=59.43 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=49.0
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK 141 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n 141 (413)
.+.+..+. +.+-..++|.-||.|.-|..|.++.|.+.|.|||-++++++.|++++ ++++|..++
T Consensus 20 ~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aD 83 (257)
T COG4106 20 RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEAD 83 (257)
T ss_pred HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceeccc
Confidence 44444443 56678899999999977777777889999999999999999998775 334444443
No 135
>KOG2198|consensus
Probab=96.43 E-value=0.0068 Score=62.62 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=59.7
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcC----CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC--hHHH-HHhc-CC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIG----NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD--LPNI-LKNM-NN 154 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p----~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~--l~~~-L~~~-~~ 154 (413)
.+|+..++|+|+..||.|.++|+.+- .|.|+|=|.|+..+..-..-+...+.-.+...+|.. .+.. +... +.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 78999999999999999999999862 379999999999887754333332222222233321 1111 1111 12
Q ss_pred CCCCccEEEEcCCCCcc
Q psy7191 155 NFNSIDGIIMDVGISDS 171 (413)
Q Consensus 155 ~~~~VDGILfDLGvSS~ 171 (413)
....+|-||.|-.||..
T Consensus 233 ~~~~fDrVLvDVPCS~D 249 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGD 249 (375)
T ss_pred hhhhcceeEEecccCCC
Confidence 23469999999999864
No 136
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.39 E-value=0.0098 Score=60.32 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
+.++..++|+.||+|..+..+.+ +++.|+|+|.++++++.|++.... . .++.++++++.++.. ..+.|
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~F 199 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKF 199 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCC
Confidence 44677999999999999887764 467999999999999999875432 1 278888888755431 12368
Q ss_pred cEEEE
Q psy7191 160 DGIIM 164 (413)
Q Consensus 160 DGILf 164 (413)
|.|+.
T Consensus 200 D~Vi~ 204 (322)
T PLN02396 200 DAVLS 204 (322)
T ss_pred CEEEE
Confidence 99885
No 137
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.35 E-value=0.013 Score=59.84 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=56.0
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCC
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSD 144 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~ 144 (413)
..|++.+++.+. ..+ +.++|.-+|.|.-|.++.... .+|+|+|.++.|++.|+++.+.. .++.+++++..+
T Consensus 184 ~~l~~~v~~~~~-~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 184 IKMLEWACEVTQ-GSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHhh-cCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 466778888774 333 469999999999999777665 48999999999999998876432 378899888754
No 138
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.34 E-value=0.014 Score=57.39 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-------CCCEEEEEeCCHHHHHHHHhhh--cCC--CCeEE
Q psy7191 69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-------GNVKVICLDRDKESFEKAKTLA--AND--PRLVP 137 (413)
Q Consensus 69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-------p~g~Via~DrD~~Al~~Ak~ll--~~~--~rv~~ 137 (413)
.|.-+-..+-.+..++++..++|-|||.||--.+..+.+ +...++|+|+|+.++..|+-++ ... ....+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 344333333333337788899999999999888887743 6789999999999999887543 221 13456
Q ss_pred EecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCc
Q psy7191 138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQA 173 (413)
Q Consensus 138 i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Ql 173 (413)
.+++.-.-+... ....+|.||.+..++..++
T Consensus 110 ~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 110 IQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEW 140 (311)
T ss_dssp EES-TTTSHSCT-----ST--EEEEEEE--CTCES-
T ss_pred cccccccccccc-----cccccccccCCCCcccccc
Confidence 666532211111 1246999999999987754
No 139
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.29 E-value=0.018 Score=60.02 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=56.2
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC--CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP--RLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~--rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
+++.++|+.+|.||-+.+.+.. +..+|+++|+|+.|++.|+++++. .+ ++++++++.. +++.++......+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~---~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF---KLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH---HHHHHHHhcCCCCC
Confidence 5789999999999977655432 345999999999999999886643 32 7889988753 33332211113699
Q ss_pred EEEEcCCC
Q psy7191 161 GIIMDVGI 168 (413)
Q Consensus 161 GILfDLGv 168 (413)
.|++|-.+
T Consensus 296 lVilDPP~ 303 (396)
T PRK15128 296 VIVMDPPK 303 (396)
T ss_pred EEEECCCC
Confidence 99965554
No 140
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.28 E-value=0.00044 Score=56.34 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=44.2
Q ss_pred EEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 90 VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD 165 (413)
+|.-+|.|.-+..|++.+|.++++|+|+++.+++.+++++.... .+..+.....++.... . .+.+|.|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD---P--PESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC---C------SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc---c--ccccceehhh
Confidence 68899999999999999999999999999999988877665433 3333333333221111 0 1368988854
No 141
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.25 E-value=0.025 Score=53.15 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=62.2
Q ss_pred cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH
Q psy7191 69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN 147 (413)
Q Consensus 69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~ 147 (413)
.|..++-+...+. +.++..++|..+|.|..+..+++. .++++++|.++.+++.++++..... ++.++..++..+.
T Consensus 33 ~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~- 108 (233)
T PRK05134 33 NPLRLNYIREHAG-GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA- 108 (233)
T ss_pred hHHHHHHHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh-
Confidence 3444555555554 567889999999999988888765 4689999999999999887654333 5677766655442
Q ss_pred HHHhcCCCCCCccEEEEcC
Q psy7191 148 ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 148 ~L~~~~~~~~~VDGILfDL 166 (413)
... .+.+|.|++..
T Consensus 109 --~~~---~~~fD~Ii~~~ 122 (233)
T PRK05134 109 --AEH---PGQFDVVTCME 122 (233)
T ss_pred --hhc---CCCccEEEEhh
Confidence 211 14699998753
No 142
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.25 E-value=0.024 Score=53.01 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=59.4
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
++..++|+.+|.|.=+...+.+.. .+|+++|.|+.|++.++++++. .. ++++++++... ++....-....+|.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~---~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR---ALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH---HHHHhhccCCCceE
Confidence 578999999999988888888743 4899999999999998876543 33 78888887632 23221101123789
Q ss_pred EEEcCCCCc
Q psy7191 162 IIMDVGISD 170 (413)
Q Consensus 162 ILfDLGvSS 170 (413)
|++|=.|..
T Consensus 125 v~~DPPy~~ 133 (189)
T TIGR00095 125 IYLDPPFFN 133 (189)
T ss_pred EEECcCCCC
Confidence 998888754
No 143
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.18 E-value=0.015 Score=53.61 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=55.9
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM 152 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~ 152 (413)
++++.+.+. ++..++|..+|.|.++..+.+.. ...++|+|.++++++.+++. ++.++++++.+. +..
T Consensus 4 ~~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~---l~~- 70 (194)
T TIGR02081 4 LESILNLIP---PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEG---LEA- 70 (194)
T ss_pred HHHHHHhcC---CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhc---ccc-
Confidence 456666653 67799999999999988887653 45789999999999887542 356677665431 111
Q ss_pred CCCCCCccEEEEcC
Q psy7191 153 NNNFNSIDGIIMDV 166 (413)
Q Consensus 153 ~~~~~~VDGILfDL 166 (413)
...+.+|.|+...
T Consensus 71 -~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 71 -FPDKSFDYVILSQ 83 (194)
T ss_pred -cCCCCcCEEEEhh
Confidence 1224689998653
No 144
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.14 E-value=0.024 Score=57.44 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=57.1
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh---hhcCCCCeEEEecCCCChHHHHH
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT---LAANDPRLVPVYGKFSDLPNILK 150 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~---ll~~~~rv~~i~~nFs~l~~~L~ 150 (413)
+.++..+. +.+++.++|..||+|.++..++...+ ..|+|+|.++.++..++. ......++.+...++.++..
T Consensus 111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--- 185 (314)
T TIGR00452 111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--- 185 (314)
T ss_pred HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---
Confidence 44566664 66789999999999999999887644 479999999998875432 22222477777777655431
Q ss_pred hcCCCCCCccEEEE
Q psy7191 151 NMNNNFNSIDGIIM 164 (413)
Q Consensus 151 ~~~~~~~~VDGILf 164 (413)
...+|.|+.
T Consensus 186 -----~~~FD~V~s 194 (314)
T TIGR00452 186 -----LYAFDTVFS 194 (314)
T ss_pred -----CCCcCEEEE
Confidence 125888874
No 145
>KOG0820|consensus
Probab=96.10 E-value=0.027 Score=56.59 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=77.7
Q ss_pred hhhccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CC
Q psy7191 61 SEDIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PR 134 (413)
Q Consensus 61 ~~n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~r 134 (413)
.+-..++|| |-.++.+++.-. +++.++++.|-=|+|.=|..+||.. .+|+|+..||.+++.-+++.+.- ++
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~k 108 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGK 108 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccce
Confidence 344566665 777777777775 8999999999999999999999984 58999999999999887776653 38
Q ss_pred eEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 135 v~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+.+++++|=..+ ++ .+|+++.||.|
T Consensus 109 LqV~~gD~lK~d-------~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 109 LQVLHGDFLKTD-------LP--RFDGCVSNLPY 133 (315)
T ss_pred eeEEecccccCC-------Cc--ccceeeccCCc
Confidence 999999985432 22 58999998887
No 146
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.09 E-value=0.016 Score=59.44 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=73.3
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCC-CeEEEecCCCChH
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDP-RLVPVYGKFSDLP 146 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~-rv~~i~~nFs~l~ 146 (413)
|.|..|=.-.+....+|.+++|+=+|-|..|-.++.+- ..+|||+|+.|.|++..++++. ... ++..++++-.++.
T Consensus 173 prl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~ 251 (341)
T COG2520 173 PRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA 251 (341)
T ss_pred CCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh
Confidence 44444433333325679999999999999999998764 3349999999999999888654 233 6889999877654
Q ss_pred HHHHhcCCCCCCccEEEEcCCCCccCcc
Q psy7191 147 NILKNMNNNFNSIDGIIMDVGISDSQAN 174 (413)
Q Consensus 147 ~~L~~~~~~~~~VDGILfDLGvSS~Qld 174 (413)
..+ +.+|-|++.+-.|++++.
T Consensus 252 ~~~-------~~aDrIim~~p~~a~~fl 272 (341)
T COG2520 252 PEL-------GVADRIIMGLPKSAHEFL 272 (341)
T ss_pred hcc-------ccCCEEEeCCCCcchhhH
Confidence 322 358999999999999876
No 147
>PHA03412 putative methyltransferase; Provisional
Probab=96.06 E-value=0.018 Score=56.55 Aligned_cols=115 Identities=11% Similarity=0.167 Sum_probs=78.2
Q ss_pred ccchhHHHHHHHHHhHHhhhhhccCCcc-ccch-HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc---CCCEEEEEe
Q psy7191 42 FTIEEEETLKKNLASLKRLSEDIYNKKY-PRTF-QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI---GNVKVICLD 116 (413)
Q Consensus 42 ~~~~~~e~~~~~~~sl~~~~~n~y~~H~-pvll-~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~---p~g~Via~D 116 (413)
..-+++|-|-++|.+--...+.-+++.+ |.=+ ..++.. ...++.++|.++|.|.=+.+++++. +...|+|+|
T Consensus 7 ~~~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVE 83 (241)
T PHA03412 7 LTYEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVE 83 (241)
T ss_pred ccHHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEE
Confidence 3445667788888875444443333332 3222 222211 2246899999999999888888764 357999999
Q ss_pred CCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191 117 RDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISD 170 (413)
Q Consensus 117 rD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS 170 (413)
+|+.|++.|+++. .++.+++++|.... + ..++|.|+-|=.|.-
T Consensus 84 ID~~Al~~Ar~n~---~~~~~~~~D~~~~~--~------~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 84 LNHTYYKLGKRIV---PEATWINADALTTE--F------DTLFDMAISNPPFGK 126 (241)
T ss_pred CCHHHHHHHHhhc---cCCEEEEcchhccc--c------cCCccEEEECCCCCC
Confidence 9999999998764 35888888876432 1 136999998877743
No 148
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.05 E-value=0.025 Score=57.43 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=87.3
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcC----CCEEEEEeCCHHHHHHHHhhhc--CCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIG----NVKVICLDRDKESFEKAKTLAA--NDP--RLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p----~g~Via~DrD~~Al~~Ak~ll~--~~~--rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
.++..+||.-+|.|-||..||+.+. ..+.+++|++.++++.+.+.+. .++ .+..++++|.+.-.++......
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 3566899999999999999999873 2578999999999999877665 466 5556999999887777542111
Q ss_pred CCCccEEEEcCCCCccCcc-CC-----CCc---cCCCCCCC----cccCCC----------CCCCHHHHHhcCCHHHHHH
Q psy7191 156 FNSIDGIIMDVGISDSQAN-ST-----RGF---KPDSNSLL----DMRMSQ----------EGITGYQVLSAIDEVSLAK 212 (413)
Q Consensus 156 ~~~VDGILfDLGvSS~Qld-~~-----RGF---Sf~~dgPL----DMRMd~----------~~~tA~~vlN~~~e~eL~~ 212 (413)
... -++|=||-|---++ ++ |.| .-..++-| |+.-|+ +++||+-.+|- |.+
T Consensus 155 -~~~-r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~-----L~~ 227 (319)
T TIGR03439 155 -SRP-TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNG-----LVH 227 (319)
T ss_pred -CCc-cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHH-----HHH
Confidence 112 36666887766666 33 333 22222223 776665 46777766664 445
Q ss_pred HHHHcCCC
Q psy7191 213 ILKTYGEE 220 (413)
Q Consensus 213 I~~~YGEE 220 (413)
|=+..|.+
T Consensus 228 ~Nr~Lg~~ 235 (319)
T TIGR03439 228 ANEILGSE 235 (319)
T ss_pred HHHHhCcc
Confidence 55555644
No 149
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.05 E-value=0.011 Score=57.80 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=41.7
Q ss_pred CCCC--CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------CC-----CCeEEEecCCCChHHHH
Q psy7191 83 SSDD--VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------ND-----PRLVPVYGKFSDLPNIL 149 (413)
Q Consensus 83 ~~~~--~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------~~-----~rv~~i~~nFs~l~~~L 149 (413)
++++ ..++|||+|-|.+|.-+. .+ +++|+++.++|-.....+.-++ .. .|++++++++.+. |
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA-~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L 145 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLA-SL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---L 145 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHH-HH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---C
T ss_pred CCCCCCCEEEECCCcchHHHHHHH-cc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---H
Confidence 3444 489999999997666554 44 5799999999966544332111 11 2899999999874 3
Q ss_pred HhcCCCCCCccEEEEcC
Q psy7191 150 KNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 150 ~~~~~~~~~VDGILfDL 166 (413)
.. +...+|.|.||=
T Consensus 146 ~~---~~~s~DVVY~DP 159 (234)
T PF04445_consen 146 RQ---PDNSFDVVYFDP 159 (234)
T ss_dssp CC---HSS--SEEEE--
T ss_pred hh---cCCCCCEEEECC
Confidence 21 124799999773
No 150
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.01 E-value=0.015 Score=58.54 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=48.3
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNS 158 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~ 158 (413)
..++..++|..+|.| -.+|+... ...+|+|+|+||.|++.|+++.+. .. ++.+. ...+. ...+
T Consensus 159 ~~~g~~vLDvG~GSG--ILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~ 225 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSG--ILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGK 225 (295)
T ss_dssp SSTTSEEEEES-TTS--HHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-
T ss_pred ccCCCEEEEeCCcHH--HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------cccc
Confidence 467889999999999 66666554 456899999999999999886542 22 55442 11111 1246
Q ss_pred ccEEEEcCC
Q psy7191 159 IDGIIMDVG 167 (413)
Q Consensus 159 VDGILfDLG 167 (413)
+|.|++|+-
T Consensus 226 ~dlvvANI~ 234 (295)
T PF06325_consen 226 FDLVVANIL 234 (295)
T ss_dssp EEEEEEES-
T ss_pred CCEEEECCC
Confidence 899988874
No 151
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.013 Score=59.09 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=48.6
Q ss_pred CCCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcCCCCeEE-EecCCCChHHHHHhcCCCCCCcc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAANDPRLVP-VYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~-i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
.+++..++|.-+|.|= .+|... +.-.+|+|+|+||.|++.|+++... +.+.. ++...-....... .+++|
T Consensus 160 ~~~g~~vlDvGcGSGI--LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~~~~~~~~-----~~~~D 231 (300)
T COG2264 160 LKKGKTVLDVGCGSGI--LAIAAAKLGAKKVVGVDIDPQAVEAARENARL-NGVELLVQAKGFLLLEVPE-----NGPFD 231 (300)
T ss_pred hcCCCEEEEecCChhH--HHHHHHHcCCceEEEecCCHHHHHHHHHHHHH-cCCchhhhcccccchhhcc-----cCccc
Confidence 4678999999999994 444443 3446899999999999999886543 22331 1222222222211 13688
Q ss_pred EEEEcC
Q psy7191 161 GIIMDV 166 (413)
Q Consensus 161 GILfDL 166 (413)
.|+.|+
T Consensus 232 vIVANI 237 (300)
T COG2264 232 VIVANI 237 (300)
T ss_pred EEEehh
Confidence 888876
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.95 E-value=0.048 Score=55.53 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=58.6
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---C-CeEEEec-CCCChHHHHHhcCCCCCCc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---P-RLVPVYG-KFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~-rv~~i~~-nFs~l~~~L~~~~~~~~~V 159 (413)
++..++|..+|.|+=...+..+.++.+++|+|+|+.|++.|++..+.. . ++.+++. +-.++..-+. ...+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~---~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII---HKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc---ccCCce
Confidence 457899999999987777777778889999999999999999876543 2 7777642 2222221111 112469
Q ss_pred cEEEEcCCC
Q psy7191 160 DGIIMDVGI 168 (413)
Q Consensus 160 DGILfDLGv 168 (413)
|.|+.|-.|
T Consensus 191 DlivcNPPf 199 (321)
T PRK11727 191 DATLCNPPF 199 (321)
T ss_pred EEEEeCCCC
Confidence 999988888
No 153
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.91 E-value=0.022 Score=54.26 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=62.8
Q ss_pred CCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCCh-HHHHHhcCCCCCCc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDL-PNILKNMNNNFNSI 159 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l-~~~L~~~~~~~~~V 159 (413)
....++....|.|.=|..|++.+| +++|+.+|.|++..+.|++.++.. . +++++.++..+. +++..+.. .+.+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~--~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGE--EGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTT--TTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccC--CCce
Confidence 457899999999977788887786 599999999999999999876543 3 999999876553 33333221 2479
Q ss_pred cEEEEcCCCCc
Q psy7191 160 DGIIMDVGISD 170 (413)
Q Consensus 160 DGILfDLGvSS 170 (413)
|.|++|..=+.
T Consensus 123 D~VFiDa~K~~ 133 (205)
T PF01596_consen 123 DFVFIDADKRN 133 (205)
T ss_dssp EEEEEESTGGG
T ss_pred eEEEEcccccc
Confidence 99998876543
No 154
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.86 E-value=0.0059 Score=55.46 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC------hHHHHHhcCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD------LPNILKNMNNN 155 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~------l~~~L~~~~~~ 155 (413)
+.++..++|.+++.||-|..++++. +.++|+|+|.-+. ...+.+..+++++-+ +.+.+.+ .
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~---~ 88 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPE---S 88 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGT---T
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccc---c
Confidence 3355899999999999999999998 6789999999977 112356666666543 2222221 1
Q ss_pred CCCccEEEEcC
Q psy7191 156 FNSIDGIIMDV 166 (413)
Q Consensus 156 ~~~VDGILfDL 166 (413)
...+|.|+-|.
T Consensus 89 ~~~~dlv~~D~ 99 (181)
T PF01728_consen 89 GEKFDLVLSDM 99 (181)
T ss_dssp TCSESEEEE--
T ss_pred ccCcceecccc
Confidence 14799999888
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.83 E-value=0.053 Score=52.60 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=46.2
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeE-EEecCCCC
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSD 144 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~-~i~~nFs~ 144 (413)
|.++++.+....++.+++|..+|+||.|..+++. +-.+|+|+|.++..+.. + +...+++. +-..|+.+
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~--~-l~~~~~v~~~~~~ni~~ 131 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE--K-LRQDERVKVLERTNIRY 131 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH--H-HhcCCCeeEeecCCccc
Confidence 3444444431236779999999999999999986 44689999999987765 2 22234554 34445553
No 156
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.80 E-value=0.017 Score=58.85 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=51.1
Q ss_pred hHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh
Q psy7191 56 SLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 56 sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll 129 (413)
.|.+.+|-+ ..||+++.+..+....++..++|.+||-||+...-... .-..++|+|+++++|+.|+++.
T Consensus 37 ~lR~fNNwv----Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 37 HLRNFNNWV----KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp HHHHHHHHH----HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHhHHH----HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHH
Confidence 355555432 47888888887753447889999999999999988765 3468999999999999998875
No 157
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.79 E-value=0.025 Score=48.78 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=46.5
Q ss_pred EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCC
Q psy7191 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSD 144 (413)
Q Consensus 88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~ 144 (413)
+++|+.+|.|-+|..++...|.+++++||.||.+++.+++..+. .+++++++...++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 58999999999999999888888999999999999998776543 2367777665543
No 158
>KOG3420|consensus
Probab=95.75 E-value=0.011 Score=54.68 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=66.3
Q ss_pred CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191 67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD 144 (413)
Q Consensus 67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~ 144 (413)
.|+-+-.=++|+.--.--.|..+.|..+|.|--+ +.-..| +-.|+|||+||+|++...++.+.+. ++.+++++.-.
T Consensus 30 p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild 107 (185)
T KOG3420|consen 30 PHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD 107 (185)
T ss_pred HHHHHHHHHHHHhhhccccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc
Confidence 3444433344443321235789999999999555 333444 4688999999999999988877776 77777777655
Q ss_pred hHHHHHhcCCCCCCccEEEEcCCCCccCccCCCCccCCCCCCCcccC
Q psy7191 145 LPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRM 191 (413)
Q Consensus 145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld~~RGFSf~~dgPLDMRM 191 (413)
+. ++ .+.+|-+++ +|. |--+++| .|||+
T Consensus 108 le--~~-----~g~fDtavi---------Npp--FGTk~~~-aDm~f 135 (185)
T KOG3420|consen 108 LE--LK-----GGIFDTAVI---------NPP--FGTKKKG-ADMEF 135 (185)
T ss_pred hh--cc-----CCeEeeEEe---------cCC--CCccccc-ccHHH
Confidence 42 11 124666663 422 4445566 79985
No 159
>KOG2915|consensus
Probab=95.75 E-value=0.035 Score=55.80 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=69.9
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHH
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNI 148 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~ 148 (413)
..-++..|. +.||.+++.+--|.|+-|.+|+... |.|+||.||.+.+.-+.|.+-... .+ +++++|.+-......
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 455677786 9999999999999999999999987 889999999998877777653332 23 888888776554333
Q ss_pred HHhcCCCCCCccEEEEcCCC
Q psy7191 149 LKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 149 L~~~~~~~~~VDGILfDLGv 168 (413)
.+ ...+|+|.+||.-
T Consensus 173 ~k-----s~~aDaVFLDlPa 187 (314)
T KOG2915|consen 173 IK-----SLKADAVFLDLPA 187 (314)
T ss_pred cc-----ccccceEEEcCCC
Confidence 32 2469999999875
No 160
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.041 Score=52.85 Aligned_cols=70 Identities=13% Similarity=0.286 Sum_probs=53.7
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCCh---HHHHHhcCCCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL---PNILKNMNNNFNS 158 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l---~~~L~~~~~~~~~ 158 (413)
.+++..+||..+-.||+|+...++. +.++|+|+|++|-.. .+.|.+++++|.+- .++...++- ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~~~V~~iq~d~~~~~~~~~l~~~l~~--~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------IPGVIFLQGDITDEDTLEKLLEALGG--AP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------CCCceEEeeeccCccHHHHHHHHcCC--CC
Confidence 4678999999999999999999998 468899999998643 34699999999763 344444432 23
Q ss_pred ccEEE
Q psy7191 159 IDGII 163 (413)
Q Consensus 159 VDGIL 163 (413)
+|.|+
T Consensus 112 ~DvV~ 116 (205)
T COG0293 112 VDVVL 116 (205)
T ss_pred cceEE
Confidence 67777
No 161
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.68 E-value=0.082 Score=51.75 Aligned_cols=76 Identities=25% Similarity=0.278 Sum_probs=57.6
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
...++|..+|.|+-+..+++..+..++.++|+|+++++.+++.+.. .++++++.++. .+++... .+.+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~---~~~l~~~---~~~y 146 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG---FKFLADT---ENTF 146 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch---HHHHHhC---CCCc
Confidence 3488999999999998998876567899999999999999876532 24788877443 3455543 2479
Q ss_pred cEEEEcCC
Q psy7191 160 DGIIMDVG 167 (413)
Q Consensus 160 DGILfDLG 167 (413)
|.|+.|..
T Consensus 147 DvIi~D~~ 154 (270)
T TIGR00417 147 DVIIVDST 154 (270)
T ss_pred cEEEEeCC
Confidence 99998853
No 162
>KOG2904|consensus
Probab=95.64 E-value=0.042 Score=55.34 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=108.3
Q ss_pred HHHHHhHHhhhhhccCCcccc-----------------------------chHhHHhccCC--CCCCCEEEEEecCCchh
Q psy7191 51 KKNLASLKRLSEDIYNKKYPR-----------------------------TFQTSASGLND--SSDDVTMIDMTYGDGNH 99 (413)
Q Consensus 51 ~~~~~sl~~~~~n~y~~H~pv-----------------------------ll~evi~~L~~--~~~~~i~VDaTlG~GGH 99 (413)
-.|++++.++|.--|. |+|+ .++-|++.+++ .-.+..++|..+|.|--
T Consensus 84 ~~ql~~i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaI 162 (328)
T KOG2904|consen 84 ILQLESIRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAI 162 (328)
T ss_pred hhHHHHHHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHH
Confidence 3467888888888887 7774 12345555532 11245899999999999
Q ss_pred HHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCcc----C
Q psy7191 100 TRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDS----Q 172 (413)
Q Consensus 100 S~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~----Q 172 (413)
|..+|..+|+++++|+|+.+.|+..|.++.+.+ +++.++|-.+.. + +........++.|+++=|-.|=.. |
T Consensus 163 slsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~-d-~~~~~~l~~~~~dllvsNPPYI~~dD~~~ 240 (328)
T KOG2904|consen 163 SLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES-D-ASDEHPLLEGKIDLLVSNPPYIRKDDNRQ 240 (328)
T ss_pred HHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc-c-cccccccccCceeEEecCCCcccccchhh
Confidence 999999999999999999999999998766543 488877654432 1 111222223579999966666222 2
Q ss_pred ccCCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHH-------HHHHcCCCchHHHHHHHHHHHH
Q psy7191 173 ANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAK-------ILKTYGEEKRSRQIARAIIETR 234 (413)
Q Consensus 173 ld~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~-------I~~~YGEE~~a~rIA~aIv~~R 234 (413)
++|+=+ +|..---|| .+....+++-++..-. .+ ++.+|++++....+.+.|+..+
T Consensus 241 l~~eV~-~yEp~lALd-----Gg~eG~~~~~~~~~~a-~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~ 302 (328)
T KOG2904|consen 241 LKPEVR-LYEPKLALD-----GGLEGYDNLVHYWLLA-TRMLQPGGFEQLELVERKEHSYLVRIWMISL 302 (328)
T ss_pred cCchhe-ecCchhhhc-----cccchhHHHHHHHHhh-HhhcccCCeEEEEecccccCcHHHHHHHHhc
Confidence 221111 111101111 3455556555554322 12 2345667777778888888777
No 163
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.57 E-value=0.025 Score=60.35 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCEEEEEecCCchhHHHHHHhcCC--------CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGN--------VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNN 155 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~--------g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~ 155 (413)
...++|-+||.|+-..++++.++. ..++|+|+|+.++..++.++..+. .+.+.+.+|-.-...... . .
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~-~-~ 109 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIE-S-Y 109 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccc-c-c
Confidence 358999999999999999987741 468999999999999988765543 455565554321111111 1 1
Q ss_pred CCCccEEEEcCCCCccCcc-CCC
Q psy7191 156 FNSIDGIIMDVGISDSQAN-STR 177 (413)
Q Consensus 156 ~~~VDGILfDLGvSS~Qld-~~R 177 (413)
.+.+|.|+-|=.|..++.+ .++
T Consensus 110 ~~~fD~IIgNPPy~~~k~~~~~~ 132 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLKPDKKEL 132 (524)
T ss_pred cCcccEEEeCCCccccCcchhhh
Confidence 2469999999999999887 554
No 164
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=95.50 E-value=0.054 Score=51.64 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=53.3
Q ss_pred ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh--hc------------CCC
Q psy7191 68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL--AA------------NDP 133 (413)
Q Consensus 68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l--l~------------~~~ 133 (413)
.-+-.|.+.++.+. ..+++.++|.-||.|-++..+.++ .-.|+|+|+.+.|++.+.+. +. ...
T Consensus 18 ~p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 18 EVNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CCCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecC
Confidence 34445555666653 457789999999999999888765 45899999999999985321 10 012
Q ss_pred CeEEEecCCCChH
Q psy7191 134 RLVPVYGKFSDLP 146 (413)
Q Consensus 134 rv~~i~~nFs~l~ 146 (413)
++++++++|-+++
T Consensus 95 ~v~~~~~D~~~~~ 107 (213)
T TIGR03840 95 NIEIFCGDFFALT 107 (213)
T ss_pred ceEEEEccCCCCC
Confidence 5777777776653
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.083 Score=52.45 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=75.8
Q ss_pred cCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC
Q psy7191 65 YNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK 141 (413)
Q Consensus 65 y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n 141 (413)
++||+ +..++.+++... +.+++.++..--|.|+=|..++++. .+|+|+.+|+..++.-++....+.++++++++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D 84 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGD 84 (259)
T ss_pred cccccccCHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCc
Confidence 44544 445888899997 8889999999999999999999986 46999999999999987776555699999999
Q ss_pred CCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 142 FSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 142 Fs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+-.++ +.++. ..+.|+.||.|
T Consensus 85 aLk~d--~~~l~----~~~~vVaNlPY 105 (259)
T COG0030 85 ALKFD--FPSLA----QPYKVVANLPY 105 (259)
T ss_pred hhcCc--chhhc----CCCEEEEcCCC
Confidence 86553 21110 36889999998
No 166
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.48 E-value=0.053 Score=56.29 Aligned_cols=75 Identities=15% Similarity=0.027 Sum_probs=56.6
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
++..++|+-+|.|.-+..++...+..+|+++|+++.|++.++++++. ...+.+++++.. .++.. ...+|.|
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~---~~l~~----~~~fD~V 129 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDAN---ALLHE----ERKFDVV 129 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHH---HHHhh----cCCCCEE
Confidence 34689999999999998887776655899999999999999887643 235667776663 33432 1359999
Q ss_pred EEcC
Q psy7191 163 IMDV 166 (413)
Q Consensus 163 LfDL 166 (413)
++|-
T Consensus 130 ~lDP 133 (382)
T PRK04338 130 DIDP 133 (382)
T ss_pred EECC
Confidence 9994
No 167
>PRK11524 putative methyltransferase; Provisional
Probab=95.46 E-value=0.027 Score=55.61 Aligned_cols=55 Identities=13% Similarity=0.028 Sum_probs=44.1
Q ss_pred chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191 72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA 130 (413)
Q Consensus 72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~ 130 (413)
|++.+|... ..+|++++|.-+|.| |+++....-+-+-||||+|++.++.|+++++
T Consensus 197 L~erlI~~~--S~~GD~VLDPF~GSG--TT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILAS--SNPGDIVLDPFAGSF--TTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHh--CCCCCEEEECCCCCc--HHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 445555555 478999999999999 7877666545678999999999999998875
No 168
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.41 E-value=0.063 Score=59.68 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=59.5
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C--CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D--PRLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~--~rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
+++.++|+.+|.|+-|...+.. +..+|+++|+++.|++.|+++++. . .++++++++.- +++++.+ ..+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~---~~l~~~~---~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL---AWLKEAR---EQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH---HHHHHcC---CCcC
Confidence 5789999999999999998875 335799999999999999987643 3 27889988753 3454432 3699
Q ss_pred EEEEcCCC
Q psy7191 161 GIIMDVGI 168 (413)
Q Consensus 161 GILfDLGv 168 (413)
.|++|-.+
T Consensus 611 lIilDPP~ 618 (702)
T PRK11783 611 LIFIDPPT 618 (702)
T ss_pred EEEECCCC
Confidence 99977554
No 169
>PLN02366 spermidine synthase
Probab=95.36 E-value=0.066 Score=54.09 Aligned_cols=76 Identities=25% Similarity=0.317 Sum_probs=58.0
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCC
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFN 157 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~ 157 (413)
+.+.++|.-+|.||=...+++. |. .+|..+|+|+.+++.|++.+.. .+|++++.++... ++++. +.+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~---~l~~~--~~~ 164 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE---FLKNA--PEG 164 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH---HHhhc--cCC
Confidence 3567899999999988888865 54 6899999999999999886532 2499999877543 44432 124
Q ss_pred CccEEEEcC
Q psy7191 158 SIDGIIMDV 166 (413)
Q Consensus 158 ~VDGILfDL 166 (413)
.+|.|+.|+
T Consensus 165 ~yDvIi~D~ 173 (308)
T PLN02366 165 TYDAIIVDS 173 (308)
T ss_pred CCCEEEEcC
Confidence 699999886
No 170
>PRK01581 speE spermidine synthase; Validated
Probab=95.35 E-value=0.046 Score=56.80 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=56.8
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh--hc-----C--CCCeEEEecCCCChHHHHHhcCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL--AA-----N--DPRLVPVYGKFSDLPNILKNMNNNF 156 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l--l~-----~--~~rv~~i~~nFs~l~~~L~~~~~~~ 156 (413)
...+++.-+|.|+-...+|+..+..+|.++|+|+++++.|++. +. . .+|++++.++-. +++... .
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~---~fL~~~---~ 224 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK---EFLSSP---S 224 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH---HHHHhc---C
Confidence 3588999999999888888764557999999999999999862 11 1 248998877654 455443 2
Q ss_pred CCccEEEEcC
Q psy7191 157 NSIDGIIMDV 166 (413)
Q Consensus 157 ~~VDGILfDL 166 (413)
+.+|.|++|+
T Consensus 225 ~~YDVIIvDl 234 (374)
T PRK01581 225 SLYDVIIIDF 234 (374)
T ss_pred CCccEEEEcC
Confidence 4699999995
No 171
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.35 E-value=0.094 Score=50.19 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=52.3
Q ss_pred HHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHH
Q psy7191 47 EETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAK 126 (413)
Q Consensus 47 ~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak 126 (413)
.+-|+..|++=. .........-+|.+.++.+. +.+++.++|.-||.|-++..++++ +..|+|+|..+.|++.+.
T Consensus 3 ~~~Wd~rw~~~~---~~~~~~~p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 3 PDFWHEKWAENQ---IGFHQEEVNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFF 76 (218)
T ss_pred HhHHHHHHcCCC---CCCCCCCCCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHH
Confidence 456777776621 01112444455556666564 557789999999999888888764 468999999999999863
No 172
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.16 E-value=0.09 Score=50.46 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=50.9
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL 163 (413)
-+..++.-+|.|--|..|..++ .+|.++|+.+.|+++|+++++..++|.+++..+.+. . +.+.||.|+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~---~-----P~~~FDLIV 111 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF---W-----PEGRFDLIV 111 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-----------SS-EEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC---C-----CCCCeeEEE
Confidence 3578999999998888887776 489999999999999999998878999999988653 2 235788887
No 173
>KOG2360|consensus
Probab=95.13 E-value=0.024 Score=59.04 Aligned_cols=83 Identities=19% Similarity=0.250 Sum_probs=64.1
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~V 159 (413)
+.+|+.++|.++-.|-.|.++..-.+ .+++||||+|++-.+.-++.+.. ...+..+.++|-.. -.-.. ...|
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~----~~~v 285 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEK----FRDV 285 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCccc----ccce
Confidence 78899999999999999999988775 59999999999988875555432 23666778888775 12211 3468
Q ss_pred cEEEEcCCCCc
Q psy7191 160 DGIIMDVGISD 170 (413)
Q Consensus 160 DGILfDLGvSS 170 (413)
..||+|=|||-
T Consensus 286 ~~iL~DpscSg 296 (413)
T KOG2360|consen 286 TYILVDPSCSG 296 (413)
T ss_pred eEEEeCCCCCC
Confidence 99999999964
No 174
>PRK03612 spermidine synthase; Provisional
Probab=95.07 E-value=0.063 Score=57.67 Aligned_cols=76 Identities=28% Similarity=0.325 Sum_probs=58.4
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhh--hc-------CCCCeEEEecCCCChHHHHHhcCC
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTL--AA-------NDPRLVPVYGKFSDLPNILKNMNN 154 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~l--l~-------~~~rv~~i~~nFs~l~~~L~~~~~ 154 (413)
+.+.++|.-+|.|+-+..+++. |. .+|.++|+|+++++.+++. +. ..+|+++++++.. +++...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~---~~l~~~-- 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF---NWLRKL-- 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH---HHHHhC--
Confidence 4568899999999999999974 55 7999999999999999872 21 1248999887654 455443
Q ss_pred CCCCccEEEEcCC
Q psy7191 155 NFNSIDGIIMDVG 167 (413)
Q Consensus 155 ~~~~VDGILfDLG 167 (413)
.+++|.|+.|+.
T Consensus 371 -~~~fDvIi~D~~ 382 (521)
T PRK03612 371 -AEKFDVIIVDLP 382 (521)
T ss_pred -CCCCCEEEEeCC
Confidence 247999999953
No 175
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.11 Score=52.69 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=58.1
Q ss_pred HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecC-CCChHHHHHhcC
Q psy7191 77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGK-FSDLPNILKNMN 153 (413)
Q Consensus 77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~n-Fs~l~~~L~~~~ 153 (413)
++.|. ...++-++|..||+|-=+..+++..|..+|.-+|+|..|++.|++.++.. .+..++++| |+++.
T Consensus 151 l~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~------- 222 (300)
T COG2813 151 LETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE------- 222 (300)
T ss_pred HHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc-------
Confidence 34443 45567899999999999999999999999999999999999999877642 232445544 55442
Q ss_pred CCCCCccEEEEc
Q psy7191 154 NNFNSIDGIIMD 165 (413)
Q Consensus 154 ~~~~~VDGILfD 165 (413)
+++|.|+-|
T Consensus 223 ---~kfd~IisN 231 (300)
T COG2813 223 ---GKFDLIISN 231 (300)
T ss_pred ---ccccEEEeC
Confidence 258888833
No 176
>PLN02672 methionine S-methyltransferase
Probab=95.00 E-value=0.076 Score=61.83 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=60.5
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC------------------CCeEEEecCCCChHH
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND------------------PRLVPVYGKFSDLPN 147 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~------------------~rv~~i~~nFs~l~~ 147 (413)
+..++|..+|.|-=+..+++..|.++|+|+|+++.|++.|+++.+.. .|+++++++.-+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh--
Confidence 45899999999999999999988889999999999999998765421 2799999886432
Q ss_pred HHHhcCCCCCCccEEEEcCCC
Q psy7191 148 ILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 148 ~L~~~~~~~~~VDGILfDLGv 168 (413)
+...+ ..+|.|+-|-.|
T Consensus 197 -~~~~~---~~fDlIVSNPPY 213 (1082)
T PLN02672 197 -CRDNN---IELDRIVGCIPQ 213 (1082)
T ss_pred -ccccC---CceEEEEECCCc
Confidence 22111 158999988887
No 177
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.97 E-value=0.059 Score=52.33 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=61.8
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf 164 (413)
-++|+..||.|.|..++..+.|+.-.+|+++-...+..+.+..... +++.+++.+-..+-.++. +.+.+|+|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~----~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI----PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC----CCCCeeEEEE
Confidence 5999999999999999999999988999999999999886654432 378888887666555443 2347999987
Q ss_pred cCCC
Q psy7191 165 DVGI 168 (413)
Q Consensus 165 DLGv 168 (413)
.+.-
T Consensus 126 ~FPD 129 (227)
T COG0220 126 NFPD 129 (227)
T ss_pred ECCC
Confidence 6643
No 178
>KOG1663|consensus
Probab=94.87 E-value=0.15 Score=49.98 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=62.0
Q ss_pred CCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC---CCCeEEEecCC-CChHHHHHhcCCCCCCc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN---DPRLVPVYGKF-SDLPNILKNMNNNFNSI 159 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~---~~rv~~i~~nF-s~l~~~L~~~~~~~~~V 159 (413)
..+..||.-.=+|.-+.+....+| +|+|++||+|+++.+.+.+..+. +.+++++++.- ..|++.+...+ .+.+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~--~~tf 150 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGE--SGTF 150 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCC--CCce
Confidence 456788887777866777777777 59999999999999999775443 23899999985 45777777653 4579
Q ss_pred cEEEEcCC
Q psy7191 160 DGIIMDVG 167 (413)
Q Consensus 160 DGILfDLG 167 (413)
|.+++|-=
T Consensus 151 DfaFvDad 158 (237)
T KOG1663|consen 151 DFAFVDAD 158 (237)
T ss_pred eEEEEccc
Confidence 99998753
No 179
>KOG1540|consensus
Probab=94.87 E-value=0.16 Score=50.82 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=107.0
Q ss_pred HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC------CEEEEEeCCHHHHHHHHhhhcC--C-C--CeEEEecCCCC
Q psy7191 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN------VKVICLDRDKESFEKAKTLAAN--D-P--RLVPVYGKFSD 144 (413)
Q Consensus 76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~------g~Via~DrD~~Al~~Ak~ll~~--~-~--rv~~i~~nFs~ 144 (413)
.++.|. +.++-.+||.+.|+|--+-.||++.++ .+|+.+|+.|.+|+.++++.+. + . ++..+.+|-.+
T Consensus 92 ~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 92 FVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred hhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 366776 788889999999999888999998865 8999999999999998877532 2 2 69999988877
Q ss_pred hHHHHHhcCCCCCCccEEEEcCCCCccCccCCCCcc----CCCCCCCcccCCC-----CC-CCHHHHHhcCCHHHHHHHH
Q psy7191 145 LPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFK----PDSNSLLDMRMSQ-----EG-ITGYQVLSAIDEVSLAKIL 214 (413)
Q Consensus 145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld~~RGFS----f~~dgPLDMRMd~-----~~-~tA~~vlN~~~e~eL~~I~ 214 (413)
|+ ++...+|+.-+=+|+=.-- |++||.. -.+-|- |+-. .. .+-..+-+.|+..=|-.+=
T Consensus 171 Lp-------Fdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGG---rf~cLeFskv~~~~l~~fy~~ysf~VlpvlG 239 (296)
T KOG1540|consen 171 LP-------FDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGG---RFSCLEFSKVENEPLKWFYDQYSFDVLPVLG 239 (296)
T ss_pred CC-------CCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCc---EEEEEEccccccHHHHHHHHhhhhhhhchhh
Confidence 65 3345788888877773210 1333321 122221 2211 12 3456666667666555554
Q ss_pred HHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcC
Q psy7191 215 KTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSR 255 (413)
Q Consensus 215 ~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~ 255 (413)
..|-..+.+..+-. + ..+.+.+-.+|+.+|+++=.
T Consensus 240 ~~iagd~~sYqYLv---e---SI~rfp~qe~f~~miedaGF 274 (296)
T KOG1540|consen 240 EIIAGDRKSYQYLV---E---SIRRFPPQEEFASMIEDAGF 274 (296)
T ss_pred HhhhhhHhhhhhHH---h---hhhcCCCHHHHHHHHHHcCC
Confidence 55555555555432 2 23356778899999998743
No 180
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.81 E-value=0.1 Score=49.78 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=64.2
Q ss_pred hhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-------CC
Q psy7191 60 LSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-------ND 132 (413)
Q Consensus 60 ~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-------~~ 132 (413)
-.++.|++=-|-.+.++++.+. +.++++++|.-.|.|.=..+..-..+-.+.+||.+++...+.|+...+ .+
T Consensus 18 ~s~~~YGEi~~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~ 96 (205)
T PF08123_consen 18 FSSETYGEISPEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHY 96 (205)
T ss_dssp TCCCCGGGCHHHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcceeecCHHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999997 999999999999999543333322343569999999998888754221 12
Q ss_pred ----CCeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191 133 ----PRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 133 ----~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD 165 (413)
.++.+++++|-+-+. ++. ..|.|++|
T Consensus 97 g~~~~~v~l~~gdfl~~~~~~~~~s-------~AdvVf~N 129 (205)
T PF08123_consen 97 GKRPGKVELIHGDFLDPDFVKDIWS-------DADVVFVN 129 (205)
T ss_dssp TB---EEEEECS-TTTHHHHHHHGH-------C-SEEEE-
T ss_pred hcccccceeeccCccccHhHhhhhc-------CCCEEEEe
Confidence 278899999987542 222 36777754
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.79 E-value=0.064 Score=57.49 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=60.8
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
..+-++||..||.|+|..++....|+..++|+|+....+..+.+.... ..++.++..++..+..++ +.+.||.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~-----~~~sv~~ 420 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL-----PNNSLDG 420 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc-----CcccccE
Confidence 346799999999999999999999999999999999988887554332 347888877644443333 3356999
Q ss_pred EEEcCCC
Q psy7191 162 IIMDVGI 168 (413)
Q Consensus 162 ILfDLGv 168 (413)
|.+.+.-
T Consensus 421 i~i~FPD 427 (506)
T PRK01544 421 IYILFPD 427 (506)
T ss_pred EEEECCC
Confidence 9877643
No 182
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=94.70 E-value=0.15 Score=50.09 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=42.5
Q ss_pred CccccchHhHHhccCC---CCCCCEEEEEecCCchh--HHHH--HHhcC-----CCEEEEEeCCHHHHHHHHhh
Q psy7191 67 KKYPRTFQTSASGLND---SSDDVTMIDMTYGDGNH--TRLI--LENIG-----NVKVICLDRDKESFEKAKTL 128 (413)
Q Consensus 67 ~H~pvll~evi~~L~~---~~~~~i~VDaTlG~GGH--S~aI--Le~~p-----~g~Via~DrD~~Al~~Ak~l 128 (413)
.|+..|.+.++..|.. ..++-.++|+.||+|.. |.+| ++..+ +.+|+|+|+|+.|++.|++.
T Consensus 78 ~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 78 KHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred HHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 4555666666554421 22345899999999975 3343 34443 47999999999999999874
No 183
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.62 E-value=0.085 Score=49.29 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCC-CChHHHHHhcCCCCCCcc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKF-SDLPNILKNMNNNFNSID 160 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nF-s~l~~~L~~~~~~~~~VD 160 (413)
+|..++|+.+|.|.=...-|++- -.+|+.+|.|+.|+...+++++..+ ++.+++.+. ..+.+... . ...+|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~---~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-K---GEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-C---TS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-c---CCCce
Confidence 68899999999998877777663 3589999999999999888766432 688888774 34433322 2 24799
Q ss_pred EEEEcCCCCcc
Q psy7191 161 GIIMDVGISDS 171 (413)
Q Consensus 161 GILfDLGvSS~ 171 (413)
.|++|=.|-..
T Consensus 117 iIflDPPY~~~ 127 (183)
T PF03602_consen 117 IIFLDPPYAKG 127 (183)
T ss_dssp EEEE--STTSC
T ss_pred EEEECCCcccc
Confidence 99999888544
No 184
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=94.50 E-value=0.22 Score=48.38 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=58.8
Q ss_pred CcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCH
Q psy7191 40 NKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDK 119 (413)
Q Consensus 40 ~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~ 119 (413)
||-.+++.+-|.+-|++=+ .........-+|.+-+..+. +.+++.+++--||.|-+...++++ +-.|+|+|..+
T Consensus 2 ~~~~~~~~~fW~~rw~~~~---~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~ 75 (226)
T PRK13256 2 NKLETNNNQYWLDRWQNDD---VGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSE 75 (226)
T ss_pred CccccCCHHHHHHHHhcCC---CCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCH
Confidence 5677888888988887521 12223444445555556665 556789999999999877777765 34799999999
Q ss_pred HHHHHHHh
Q psy7191 120 ESFEKAKT 127 (413)
Q Consensus 120 ~Al~~Ak~ 127 (413)
.|++.+.+
T Consensus 76 ~Ai~~~~~ 83 (226)
T PRK13256 76 KAVLSFFS 83 (226)
T ss_pred HHHHHHHH
Confidence 99999754
No 185
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.44 E-value=0.24 Score=46.99 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=50.0
Q ss_pred HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191 76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS 143 (413)
Q Consensus 76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs 143 (413)
++.... ..+...+||.--|.|..+.+|++++|+.+++.+|. |.+++.+++ .+|++++-++|-
T Consensus 92 ~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f 153 (241)
T PF00891_consen 92 LLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF 153 (241)
T ss_dssp HHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT
T ss_pred hhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH
Confidence 344443 56677999999999999999999999999999999 899988877 359999999984
No 186
>KOG1541|consensus
Probab=94.24 E-value=0.066 Score=52.61 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=41.9
Q ss_pred chHhHHhccCCCCC--CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh
Q psy7191 72 TFQTSASGLNDSSD--DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT 127 (413)
Q Consensus 72 ll~evi~~L~~~~~--~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ 127 (413)
|.+-.++.|. ..+ .+.++|..||.| -|..+|+.- .-..+|+|+.|.+++.|.+
T Consensus 36 m~eRaLELLa-lp~~~~~~iLDIGCGsG-LSg~vL~~~-Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 36 MAERALELLA-LPGPKSGLILDIGCGSG-LSGSVLSDS-GHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred HHHHHHHHhh-CCCCCCcEEEEeccCCC-cchheeccC-CceEEeecCCHHHHHHHHH
Confidence 6667778775 444 679999999999 777777653 3456899999999999875
No 187
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.22 E-value=0.089 Score=47.98 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=38.6
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT 127 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ 127 (413)
-|++.+|... ..+|++++|.-+|.| |+++....-+-+-||+|++++..+.|++
T Consensus 179 ~l~~~lI~~~--t~~gdiVlDpF~GSG--TT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS--TNPGDIVLDPFAGSG--TTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH--S-TT-EEEETT-TTT--HHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh--hccceeeehhhhccC--hHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3556666665 578999999999999 7777666545678999999999998864
No 188
>KOG3191|consensus
Probab=94.22 E-value=0.19 Score=48.06 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
....++++.-+|.|--|.++.+.. |+....+.|+.|.|++.+++-..... ++..++.++.. ++..++||.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~--------~l~~~~VDv 113 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS--------GLRNESVDV 113 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh--------hhccCCccE
Confidence 336799999999999999998887 77888999999999999876443222 56677776532 222368999
Q ss_pred EEEcCCC
Q psy7191 162 IIMDVGI 168 (413)
Q Consensus 162 ILfDLGv 168 (413)
++|+=+|
T Consensus 114 LvfNPPY 120 (209)
T KOG3191|consen 114 LVFNPPY 120 (209)
T ss_pred EEECCCc
Confidence 9999988
No 189
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.80 E-value=0.18 Score=44.57 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=36.7
Q ss_pred CCCCCEEEEEecCCchhHHHHHHh----cCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILEN----IGNVKVICLDRDKESFEKAKTLAA 130 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~----~p~g~Via~DrD~~Al~~Ak~ll~ 130 (413)
..+...+||...|-|.=|..+... .++.+|+|+|.++..++.+.++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 356789999999999545544441 477899999999999888876543
No 190
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.17 Score=52.17 Aligned_cols=85 Identities=22% Similarity=0.221 Sum_probs=61.5
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEec-CCCChHHHH
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYG-KFSDLPNIL 149 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~-nFs~l~~~L 149 (413)
.-++-+|...++|+.++|==||+||- +.+. +-++++||.|+|..+++-|+.+++.|. .+.++.. +-.+++ |
T Consensus 186 AR~mVNLa~v~~G~~vlDPFcGTGgi---LiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l 260 (347)
T COG1041 186 ARAMVNLARVKRGELVLDPFCGTGGI---LIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--L 260 (347)
T ss_pred HHHHHHHhccccCCEeecCcCCccHH---HHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--C
Confidence 33444454488999999999999963 3333 357899999999999999999988774 5555555 555554 3
Q ss_pred HhcCCCCCCccEEEEcCCC
Q psy7191 150 KNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 150 ~~~~~~~~~VDGILfDLGv 168 (413)
. .+.||+|+-|-.|
T Consensus 261 ~-----~~~vdaIatDPPY 274 (347)
T COG1041 261 R-----DNSVDAIATDPPY 274 (347)
T ss_pred C-----CCccceEEecCCC
Confidence 2 2359999976655
No 191
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.67 E-value=0.21 Score=43.14 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=39.4
Q ss_pred CccccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHH
Q psy7191 67 KKYPRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEK 124 (413)
Q Consensus 67 ~H~pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~ 124 (413)
-|+...+.+.+..+.. ..+++.++|.-+|.|..+..+.+. + .+++|+|.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-G-FEVTGVDISPQMIEK 59 (161)
T ss_dssp -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-T-SEEEEEESSHHHHHH
T ss_pred hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-C-CEEEEEECCHHHHhh
Confidence 3444444455554432 357889999999999877777443 3 399999999999976
No 192
>PLN02823 spermine synthase
Probab=93.53 E-value=0.26 Score=50.45 Aligned_cols=74 Identities=26% Similarity=0.255 Sum_probs=57.0
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
..++-+-.|.|+-...+|+..+..+|.++|+|++.++.+++.+.. .+|++++.++-. .+|+.. .+++|
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~---~~L~~~---~~~yD 178 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR---AELEKR---DEKFD 178 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH---HHHhhC---CCCcc
Confidence 456778888888888898865567899999999999999886532 248999887654 455443 24799
Q ss_pred EEEEcC
Q psy7191 161 GIIMDV 166 (413)
Q Consensus 161 GILfDL 166 (413)
.|++|+
T Consensus 179 vIi~D~ 184 (336)
T PLN02823 179 VIIGDL 184 (336)
T ss_pred EEEecC
Confidence 999997
No 193
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.49 E-value=0.21 Score=55.69 Aligned_cols=54 Identities=19% Similarity=0.085 Sum_probs=41.0
Q ss_pred CEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 110 VKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 110 g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
.+++|+|+|+.|++.|++++... . ++.+.++++.++..... .+.+|.|+.|-.|
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----~~~~d~IvtNPPY 313 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----KGPTGLVISNPPY 313 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----cCCCCEEEECCCC
Confidence 37999999999999999876643 2 68999999887642211 1358999999776
No 194
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.02 E-value=0.2 Score=52.34 Aligned_cols=77 Identities=23% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc--CC--------------------------------C-------EEEEEeCCHHH
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI--GN--------------------------------V-------KVICLDRDKES 121 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~--p~--------------------------------g-------~Via~DrD~~A 121 (413)
.+++.-++|=+||.| |-.|=..+ ++ + .+||+|+|+.+
T Consensus 189 w~~~~pl~DPmCGSG--Ti~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 189 WKPDEPLLDPMCGSG--TILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred CCCCCccccCCCCcc--HHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 566779999999999 65543322 21 1 37899999999
Q ss_pred HHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 122 FEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 122 l~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
++.|+.+.... ..++|.++++..+...+ ..+|.|+.|..|
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-------~~~gvvI~NPPY 309 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLKEPL-------EEYGVVISNPPY 309 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCCCCC-------CcCCEEEeCCCc
Confidence 99999865442 37999999998876543 247889977766
No 195
>PRK04148 hypothetical protein; Provisional
Probab=92.79 E-value=0.41 Score=43.22 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=35.6
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL 128 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l 128 (413)
..+..++|.-+|.|.+....|... +..|+|+|+++.|++.++++
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh
Confidence 345789999999998666666654 46999999999999998765
No 196
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=92.72 E-value=0.27 Score=51.00 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=58.7
Q ss_pred CEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL 163 (413)
-.++|+-.|.|--+..++...++ .+|++.|++|.|++..+++++... ++.+++++... ++...+ ..+|.|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~---~l~~~~---~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAAN---VLRYRN---RKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHH---HHHHhC---CCCCEEE
Confidence 48999999999988888887654 589999999999999988765432 57788876544 344322 3599999
Q ss_pred EcCCCCc
Q psy7191 164 MDVGISD 170 (413)
Q Consensus 164 fDLGvSS 170 (413)
+|- +-+
T Consensus 120 lDP-fGs 125 (374)
T TIGR00308 120 IDP-FGT 125 (374)
T ss_pred eCC-CCC
Confidence 887 544
No 197
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.71 E-value=0.18 Score=49.33 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=36.5
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CC--CEEEEEeCCHHHHHHHHhhh
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GN--VKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~--g~Via~DrD~~Al~~Ak~ll 129 (413)
++.++..|. -...-.+-|+|||+| |-.-+|..+ ++ ..|||-|+|++|++.|.++|
T Consensus 40 ~qR~l~~l~-~~~p~tLyDPCCG~g-yLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 40 FQRALHYLE-GKGPYTLYDPCCGSG-YLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp HHHHHCTSS-S-S-EEEEETT-TTS-HHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHhhc-CCCCeeeeccCCCcc-HHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 345566664 233347789999999 455555544 33 68999999999999998765
No 198
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=92.39 E-value=0.39 Score=44.53 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
.+..++|..+|.|.-+..+++.. .+++|+|.++.+++.++++..... ++.+..+++.++ .... .+.+|.|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~---~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL---AEKG---AKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh---hcCC---CCCccEE
Confidence 46789999999998777776543 469999999999999887654322 577777765443 2111 2468998
Q ss_pred EEc
Q psy7191 163 IMD 165 (413)
Q Consensus 163 LfD 165 (413)
+..
T Consensus 117 ~~~ 119 (224)
T TIGR01983 117 TCM 119 (224)
T ss_pred Eeh
Confidence 864
No 199
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.89 E-value=1.2 Score=42.41 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=66.9
Q ss_pred cchHhHHhccCCC--CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCCh
Q psy7191 71 RTFQTSASGLNDS--SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDL 145 (413)
Q Consensus 71 vll~evi~~L~~~--~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l 145 (413)
.+-+.+.+.|. + -.|..++|+-.|.|+=...=|++. -.+++.+|.|..|+...+++++.. .++.+++.+=.
T Consensus 28 rVREalFNil~-~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~-- 103 (187)
T COG0742 28 RVREALFNILA-PDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL-- 103 (187)
T ss_pred HHHHHHHHhcc-ccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--
Confidence 33444455554 3 468999999999997666655552 358999999999999988765532 36777766543
Q ss_pred HHHHHhcCCCCCCccEEEEcCCCCccC
Q psy7191 146 PNILKNMNNNFNSIDGIIMDVGISDSQ 172 (413)
Q Consensus 146 ~~~L~~~~~~~~~VDGILfDLGvSS~Q 172 (413)
.+|+..+-. +.+|.|.+|=.|-.-.
T Consensus 104 -~~L~~~~~~-~~FDlVflDPPy~~~l 128 (187)
T COG0742 104 -RALKQLGTR-EPFDLVFLDPPYAKGL 128 (187)
T ss_pred -HHHHhcCCC-CcccEEEeCCCCccch
Confidence 566665532 2599999998886333
No 200
>KOG2187|consensus
Probab=91.87 E-value=0.26 Score=53.25 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=53.9
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCC
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSD 144 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~ 144 (413)
+||-.-+=+++. ...+.+++|++||.|=-+.++.. +-.+|||+.++|+|++.|+...+..+ +.+|+.+.-.+
T Consensus 369 evLys~i~e~~~-l~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 369 EVLYSTIGEWAG-LPADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHhC-CCCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 445555556665 67789999999999966655544 34789999999999999988765433 89999984433
No 201
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.81 E-value=0.89 Score=44.33 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=53.1
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNSID 160 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~VD 160 (413)
.-++=.-.|.||-+..+++..+..+|.++|+||.+++.+++.+.. .+|++++.++- ..++++..- .++|
T Consensus 78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg---~~~l~~~~~--~~yD 152 (246)
T PF01564_consen 78 KRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG---RKFLKETQE--EKYD 152 (246)
T ss_dssp -EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH---HHHHHTSSS--T-EE
T ss_pred CceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh---HHHHHhccC--Cccc
Confidence 344445589999999998765567999999999999999875421 24999987654 456766421 1699
Q ss_pred EEEEcCC
Q psy7191 161 GIIMDVG 167 (413)
Q Consensus 161 GILfDLG 167 (413)
.|+.|+-
T Consensus 153 vIi~D~~ 159 (246)
T PF01564_consen 153 VIIVDLT 159 (246)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9998873
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=91.32 E-value=1.4 Score=44.21 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=59.9
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-----C-CCeEEEecCCCChHHHHHhcCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-----D-PRLVPVYGKFSDLPNILKNMNNNF 156 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-----~-~rv~~i~~nFs~l~~~L~~~~~~~ 156 (413)
++| .-++=.-.|.||=++.+|+..+--+++.+|+|++.++.+++.+.. + +|++++.++ -.++++...
T Consensus 75 ~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D---g~~~v~~~~--- 147 (282)
T COG0421 75 PNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD---GVEFLRDCE--- 147 (282)
T ss_pred CCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc---HHHHHHhCC---
Confidence 445 467778899999999999887778999999999999999986542 2 588887554 346676542
Q ss_pred CCccEEEEcC
Q psy7191 157 NSIDGIIMDV 166 (413)
Q Consensus 157 ~~VDGILfDL 166 (413)
.++|.|+.|.
T Consensus 148 ~~fDvIi~D~ 157 (282)
T COG0421 148 EKFDVIIVDS 157 (282)
T ss_pred CcCCEEEEcC
Confidence 3699999885
No 203
>KOG2361|consensus
Probab=91.29 E-value=0.99 Score=44.88 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=92.0
Q ss_pred hhhhhccCCccccchHhHHhccCCCC--CCCEEEEEecCCchhHHHHHHhcCC--CEEEEEeCCHHHHHHHHhhhcCCC-
Q psy7191 59 RLSEDIYNKKYPRTFQTSASGLNDSS--DDVTMIDMTYGDGNHTRLILENIGN--VKVICLDRDKESFEKAKTLAANDP- 133 (413)
Q Consensus 59 ~~~~n~y~~H~pvll~evi~~L~~~~--~~~i~VDaTlG~GGHS~aILe~~p~--g~Via~DrD~~Al~~Ak~ll~~~~- 133 (413)
.++.|-+.+---=|++|.=+.+. .. +.+.++..-||.|.-.--||+-.|+ .+|||+|-.|.|++..++..+..+
T Consensus 44 ~~~~~rFfkdR~wL~~Efpel~~-~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~ 122 (264)
T KOG2361|consen 44 KIHENRFFKDRNWLLREFPELLP-VDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES 122 (264)
T ss_pred hhccccccchhHHHHHhhHHhhC-ccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh
Confidence 33333333333346666555552 22 2237899999999999999998876 899999999999999988765433
Q ss_pred CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCc--------------cCCCCc-cCCCCCCCcc---cCCC--
Q psy7191 134 RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQA--------------NSTRGF-KPDSNSLLDM---RMSQ-- 193 (413)
Q Consensus 134 rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Ql--------------d~~RGF-Sf~~dgPLDM---RMd~-- 193 (413)
++.....+++.-. +. ..+..+.||+|.+=+=.|.-.= .|+ |+ -|+.=|..|| |+-.
T Consensus 123 ~~~afv~Dlt~~~--~~-~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG-G~llfrDYg~~DlaqlRF~~~~ 198 (264)
T KOG2361|consen 123 RVEAFVWDLTSPS--LK-EPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG-GSLLFRDYGRYDLAQLRFKKGQ 198 (264)
T ss_pred hhcccceeccchh--cc-CCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC-cEEEEeecccchHHHHhccCCc
Confidence 6665555555433 22 2344567888765544443221 122 33 2333366666 2221
Q ss_pred ----------CCCCHHHHHhcCCHHHHHHHHHHcC
Q psy7191 194 ----------EGITGYQVLSAIDEVSLAKILKTYG 218 (413)
Q Consensus 194 ----------~~~tA~~vlN~~~e~eL~~I~~~YG 218 (413)
.|.- +--.++++|..+|.+=|
T Consensus 199 ~i~~nfYVRgDGT~----~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 199 CISENFYVRGDGTR----AYFFTEEELDELFTKAG 229 (264)
T ss_pred eeecceEEccCCce----eeeccHHHHHHHHHhcc
Confidence 1222 23478889999998888
No 204
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.00 E-value=1 Score=37.51 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=50.5
Q ss_pred cCCchhHHHHHHhc-CCC-EEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 94 YGDGNHTRLILENI-GNV-KVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 94 lG~GGHS~aILe~~-p~g-~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
+|.|..+..+++.+ .++ .|+.+|.|++..+.+.+. .+.++.+++.+.+ .|++.++. ..+.++...+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~-~l~~a~i~--~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPE-VLERAGIE--KADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHH-HHHHTTGG--CESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhh-HHhhcCcc--ccCEEEEccC
Confidence 69999999999988 455 899999999998877553 2678999999975 45556664 6999997665
No 205
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=90.66 E-value=0.19 Score=49.89 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=52.9
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh--cC-CC-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA--AN-DP-RLVPVYGKFSDLPNILKNMNNNFNS 158 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll--~~-~~-rv~~i~~nFs~l~~~L~~~~~~~~~ 158 (413)
++.|+.++|+|.|-|.-+..=+++ ...+||.+..||..++.|+-+- .+ +. ++.+++++-.+ +++.++ .++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e---~V~~~~--D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE---VVKDFD--DES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---HHhcCC--ccc
Confidence 666999999999999655555544 2249999999999999986431 11 22 68888887543 444433 347
Q ss_pred ccEEE
Q psy7191 159 IDGII 163 (413)
Q Consensus 159 VDGIL 163 (413)
||+|+
T Consensus 206 fDaIi 210 (287)
T COG2521 206 FDAII 210 (287)
T ss_pred cceEe
Confidence 99999
No 206
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=90.56 E-value=0.87 Score=43.57 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
+.||..++|.-||.|- =.+.|....++..+|+|+|++.+..+.++ -+.+++++- ++-|..+ +...||.|
T Consensus 11 I~pgsrVLDLGCGdG~-LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dl---d~gL~~f--~d~sFD~V 79 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGE-LLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDL---DEGLADF--PDQSFDYV 79 (193)
T ss_pred cCCCCEEEecCCCchH-HHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCH---HHhHhhC--CCCCccEE
Confidence 4689999999999993 33444444578999999999998776443 255566543 3334332 23456666
Q ss_pred E
Q psy7191 163 I 163 (413)
Q Consensus 163 L 163 (413)
+
T Consensus 80 I 80 (193)
T PF07021_consen 80 I 80 (193)
T ss_pred e
Confidence 6
No 207
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=89.56 E-value=1.3 Score=46.02 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=53.9
Q ss_pred hHhHHhccCC-------CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC-CCC
Q psy7191 73 FQTSASGLND-------SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK-FSD 144 (413)
Q Consensus 73 l~evi~~L~~-------~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n-Fs~ 144 (413)
|.|.++.+.. +.+|..+||.-++.||-|..++++ +++|+|+|..+-+ .. +...++|+.+..+ |..
T Consensus 192 LeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~----~~-L~~~~~V~h~~~d~fr~ 264 (357)
T PRK11760 192 LEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA----QS-LMDTGQVEHLRADGFKF 264 (357)
T ss_pred HHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC----Hh-hhCCCCEEEEeccCccc
Confidence 5666666541 357899999999999999999987 4699999976532 22 2233577766544 554
Q ss_pred hHHHHHhcCCCCCCccEEEEcCC
Q psy7191 145 LPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 145 l~~~L~~~~~~~~~VDGILfDLG 167 (413)
.+. .+.||-++-|.=
T Consensus 265 ~p~--------~~~vDwvVcDmv 279 (357)
T PRK11760 265 RPP--------RKNVDWLVCDMV 279 (357)
T ss_pred CCC--------CCCCCEEEEecc
Confidence 321 235788886553
No 208
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=89.24 E-value=0.84 Score=45.66 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=54.1
Q ss_pred hHhHHhccCCCC-CCCEEEEEecC--CchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCC--eEEEecCCCChH
Q psy7191 73 FQTSASGLNDSS-DDVTMIDMTYG--DGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPR--LVPVYGKFSDLP 146 (413)
Q Consensus 73 l~evi~~L~~~~-~~~i~VDaTlG--~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~r--v~~i~~nFs~l~ 146 (413)
|.-++.+|. -. .-.-|||+-.| +-|++-.+.... |+++|+=+|.||.++..++.+|...++ ..+++++..+.+
T Consensus 56 l~RaVr~la-~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 56 LRRAVRYLA-EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp HHHHHHHHH-CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred HHHHHHHHH-HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 455666764 22 22479998777 446788888775 999999999999999999999876555 999999999999
Q ss_pred HHHHh
Q psy7191 147 NILKN 151 (413)
Q Consensus 147 ~~L~~ 151 (413)
.+|..
T Consensus 135 ~iL~~ 139 (267)
T PF04672_consen 135 AILAH 139 (267)
T ss_dssp HHHCS
T ss_pred HHhcC
Confidence 99974
No 209
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.91 E-value=6.7 Score=38.33 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=72.1
Q ss_pred HHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchh--HHHHHHh--cCCCEEEEEeCCHHHH
Q psy7191 47 EETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNH--TRLILEN--IGNVKVICLDRDKESF 122 (413)
Q Consensus 47 ~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGH--S~aILe~--~p~g~Via~DrD~~Al 122 (413)
+|...+-|-.==+.|+++.-.+ ..|.|.+|..-.+...+|+++.++|.- |.+|... .-+|++++|--|++.+
T Consensus 7 pe~AtkAYl~Tvk~c~~~~ep~----~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~ 82 (218)
T PF07279_consen 7 PENATKAYLDTVKMCKKFKEPG----VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL 82 (218)
T ss_pred hhHHHHHHHHHHHHhhhcCCCC----HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH
Confidence 3455555555555677665443 458888886555678999998887654 3444433 3579999999999987
Q ss_pred HHHHhhhcCCC---CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 123 EKAKTLAANDP---RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 123 ~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
...++.+.... -+.|+.++= ..+++..+ ..+|++|+|.-.
T Consensus 83 ~~~~~~l~~~~~~~~vEfvvg~~--~e~~~~~~----~~iDF~vVDc~~ 125 (218)
T PF07279_consen 83 SEYKKALGEAGLSDVVEFVVGEA--PEEVMPGL----KGIDFVVVDCKR 125 (218)
T ss_pred HHHHHHHhhccccccceEEecCC--HHHHHhhc----cCCCEEEEeCCc
Confidence 66655544332 457776532 33455443 369999988663
No 210
>PRK13699 putative methylase; Provisional
Probab=88.91 E-value=0.95 Score=43.67 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=46.3
Q ss_pred cCCccccch-HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191 65 YNKKYPRTF-QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN 131 (413)
Q Consensus 65 y~~H~pvll-~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~ 131 (413)
|-.-.|+=| +.+|... .++|++++|.=+|.| |+++....-+-+.+|+|++++-.+.|.++++.
T Consensus 144 hp~~kP~~l~~~~i~~~--s~~g~~vlDpf~Gsg--tt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 144 HPTEKPVTSLQPLIESF--THPNAIVLDPFAGSG--STCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCcHHHHHHHHHHh--CCCCCEEEeCCCCCC--HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 444456533 3345444 468999999999999 77776654456789999999999998877654
No 211
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=87.71 E-value=2.1 Score=43.87 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHH
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEK 124 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~ 124 (413)
-.|..++|.-||+|.|+-.++..-+ ..|+|||-++--+..
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQ 153 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHH
Confidence 3588999999999999999998744 479999988776655
No 212
>KOG3010|consensus
Probab=87.63 E-value=0.66 Score=46.06 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=45.8
Q ss_pred cCCccccchHhHHhccCCCCCC-CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191 65 YNKKYPRTFQTSASGLNDSSDD-VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS 143 (413)
Q Consensus 65 y~~H~pvll~evi~~L~~~~~~-~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs 143 (413)
.++-||-=+=.-+..+ .++ .+.+|.-+|+| -+..+++.++. .|||.|..+.+|+.|++. ++++..|..++
T Consensus 15 ARP~YPtdw~~~ia~~---~~~h~~a~DvG~G~G-qa~~~iae~~k-~VIatD~s~~mL~~a~k~----~~~~y~~t~~~ 85 (261)
T KOG3010|consen 15 ARPSYPTDWFKKIASR---TEGHRLAWDVGTGNG-QAARGIAEHYK-EVIATDVSEAMLKVAKKH----PPVTYCHTPST 85 (261)
T ss_pred cCCCCcHHHHHHHHhh---CCCcceEEEeccCCC-cchHHHHHhhh-hheeecCCHHHHHHhhcC----CCcccccCCcc
Confidence 3566673222223333 233 39999999999 67777666654 699999999999988764 24444444443
No 213
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=87.35 E-value=1 Score=44.52 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=36.4
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA 130 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~ 130 (413)
+|..++|.-||+|-=|.-+... +..|+|+|.++.+|+.|+....
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~ 102 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHAL 102 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhh
Confidence 6889999999999666666544 4799999999999999986543
No 214
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=87.33 E-value=2.4 Score=40.78 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=63.3
Q ss_pred ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh--hhc-------C---C--CCe
Q psy7191 70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT--LAA-------N---D--PRL 135 (413)
Q Consensus 70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~--ll~-------~---~--~rv 135 (413)
.-.|.+.++.+. ..+++.+++--||.|-+...++++ +-.|+|+|..+.|++.+.+ .+. . + .++
T Consensus 23 ~p~L~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 23 NPALVEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp THHHHHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 344556666665 677889999999999666666654 3589999999999999732 221 0 1 267
Q ss_pred EEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCccCCCCccCCCCCCCccc
Q psy7191 136 VPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMR 190 (413)
Q Consensus 136 ~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld~~RGFSf~~dgPLDMR 190 (413)
++++++|=++..-. .++||+|. +|||=-.- |-+||
T Consensus 100 ~~~~gDfF~l~~~~------~g~fD~iy------------Dr~~l~Al--pp~~R 134 (218)
T PF05724_consen 100 TIYCGDFFELPPED------VGKFDLIY------------DRTFLCAL--PPEMR 134 (218)
T ss_dssp EEEES-TTTGGGSC------HHSEEEEE------------ECSSTTTS---GGGH
T ss_pred EEEEcccccCChhh------cCCceEEE------------EecccccC--CHHHH
Confidence 89999987764211 12578776 66654322 45676
No 215
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=87.02 E-value=1.8 Score=43.57 Aligned_cols=76 Identities=26% Similarity=0.283 Sum_probs=50.5
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC--CCeEEEecC-CCChHHHHHhcCCCCCCc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND--PRLVPVYGK-FSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~--~rv~~i~~n-Fs~l~~~L~~~~~~~~~V 159 (413)
.+..++|+-+=+||-|.+-+.. .-.+|+++|.+..|++.|+++.+ .+ .+++++..+ |..+.+ +++. +++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-~~~~----~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-LKKG----GRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-HHHT----T-E
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-HhcC----CCC
Confidence 4779999999999998875532 23489999999999999988644 33 378888776 444433 3332 369
Q ss_pred cEEEEcC
Q psy7191 160 DGIIMDV 166 (413)
Q Consensus 160 DGILfDL 166 (413)
|.|++|-
T Consensus 197 D~IIlDP 203 (286)
T PF10672_consen 197 DLIILDP 203 (286)
T ss_dssp EEEEE--
T ss_pred CEEEECC
Confidence 9999543
No 216
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=86.84 E-value=0.43 Score=46.17 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhccc
Q psy7191 299 YNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVI 352 (413)
Q Consensus 299 FQALRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~ 352 (413)
+-+||-.- ....+|..+..+|||||+++|+-|+.-+-.+++.+++-+..
T Consensus 123 ~fglrn~~-----d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~ 171 (233)
T PF01209_consen 123 SFGLRNFP-----DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFK 171 (233)
T ss_dssp ES-GGG-S-----SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---
T ss_pred HhhHHhhC-----CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeec
Confidence 33677443 36779999999999999999999999998889888776543
No 217
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=86.50 E-value=1.9 Score=45.28 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCC--CeEEEecC-CCChHHHHHhcCCCCCCc
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDP--RLVPVYGK-FSDLPNILKNMNNNFNSI 159 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~--rv~~i~~n-Fs~l~~~L~~~~~~~~~V 159 (413)
.|+.++|+-+=+||-|.+-+.. .-..|+++|.+..|++-|+++.+ ..+ ++.+++++ |..|...-+ .| ..+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g---~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RG---EKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cC---Ccc
Confidence 3889999999999988876543 22389999999999999998654 332 78888877 555543332 23 369
Q ss_pred cEEEEc
Q psy7191 160 DGIIMD 165 (413)
Q Consensus 160 DGILfD 165 (413)
|.|++|
T Consensus 292 DlIilD 297 (393)
T COG1092 292 DLIILD 297 (393)
T ss_pred cEEEEC
Confidence 999943
No 218
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=86.25 E-value=3.6 Score=39.20 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=68.3
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHh
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~ 151 (413)
.+.....+. +..|--++..--|.|=-|++||++- ++..|+++..|++-...-.+ .|+-+.+++++--+++..+.+
T Consensus 37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~---~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ---LYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH---hCCCccccccchhhHHHHHhh
Confidence 333344444 6777789999999999999999996 66789999999987655444 367677999998899988888
Q ss_pred cCCCCCCccEEEEcCCC
Q psy7191 152 MNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 152 ~~~~~~~VDGILfDLGv 168 (413)
...+ .||.|+==|.+
T Consensus 113 ~~gq--~~D~viS~lPl 127 (194)
T COG3963 113 HKGQ--FFDSVISGLPL 127 (194)
T ss_pred cCCC--eeeeEEecccc
Confidence 6554 48888744444
No 219
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=84.64 E-value=0.77 Score=37.91 Aligned_cols=65 Identities=25% Similarity=0.182 Sum_probs=25.5
Q ss_pred CchhHHHHHHhcC-CC--EEEEEeCCHH---HHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 96 DGNHTRLILENIG-NV--KVICLDRDKE---SFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 96 ~GGHS~aILe~~p-~g--~Via~DrD~~---Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
.|+=|..|++.++ ++ +++++|..+. +-+..++ ... .+++++++++.+.-..+. ..++|.|++|.+
T Consensus 7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~iDg~ 78 (106)
T PF13578_consen 7 SGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEEEES-
T ss_pred cccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEEECCC
Confidence 6766777777774 33 7999999994 3333332 112 389999999965433332 136999999975
No 220
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=84.55 E-value=0.26 Score=38.50 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=30.4
Q ss_pred HhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHH
Q psy7191 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNEL 249 (413)
Q Consensus 202 lN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~i 249 (413)
||+.+.+||..+- | -....|++|+++|.+.+||.+..||.++
T Consensus 8 iN~as~~eL~~lp---g---i~~~~A~~Iv~~R~~~G~f~s~~dL~~v 49 (65)
T PF12836_consen 8 INTASAEELQALP---G---IGPKQAKAIVEYREKNGPFKSLEDLKEV 49 (65)
T ss_dssp TTTS-HHHHHTST---T-----HHHHHHHHHHHHHH-S-SSGGGGGGS
T ss_pred CccCCHHHHHHcC---C---CCHHHHHHHHHHHHhCcCCCCHHHHhhC
Confidence 6888999987651 1 2578899999999888899999999754
No 221
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=82.57 E-value=1.4 Score=40.16 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHhhcccCCeEEEEEcc-----chhhHHHHHHHhhcc
Q psy7191 315 YAMIIAEKYLKPEGLLLTKCNS-----IVEDKIVKRHLTGNV 351 (413)
Q Consensus 315 ~~L~~a~~~L~pgGrl~VISFH-----SLEDRiVK~~f~~~~ 351 (413)
.+|+++.++|+|||+|+|+.|. --|-.-|..|++.+.
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 4578889999999999999997 467888988888753
No 222
>PRK00536 speE spermidine synthase; Provisional
Probab=81.34 E-value=4.7 Score=40.11 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=50.2
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC----C--CCeEEEecCCCChHHHHHhcCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN----D--PRLVPVYGKFSDLPNILKNMNNNF 156 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~----~--~rv~~i~~nFs~l~~~L~~~~~~~ 156 (413)
+.|. .++=+--|.||=.+.+|+. |. +|.-+|+|+++++.+++-+.. + +|++++. ++.+.. .
T Consensus 71 ~~pk-~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--------~~~~~~--~ 137 (262)
T PRK00536 71 KELK-EVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--------QLLDLD--I 137 (262)
T ss_pred CCCC-eEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--------hhhhcc--C
Confidence 4443 4444566888889999976 54 999999999999999884321 2 4999885 122211 2
Q ss_pred CCccEEEEcC
Q psy7191 157 NSIDGIIMDV 166 (413)
Q Consensus 157 ~~VDGILfDL 166 (413)
+.+|.||.|+
T Consensus 138 ~~fDVIIvDs 147 (262)
T PRK00536 138 KKYDLIICLQ 147 (262)
T ss_pred CcCCEEEEcC
Confidence 4699999994
No 223
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.77 E-value=13 Score=34.21 Aligned_cols=84 Identities=12% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
+..++ .|-|+||=..++.+.+ .+.+|++++++++.++...+.++.. .++.++..++.+...+ +....-..+++
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 34444 6666666666666655 3468999999988776654433332 3788899998876543 22210011369
Q ss_pred cEEEEcCCCCc
Q psy7191 160 DGIIMDVGISD 170 (413)
Q Consensus 160 DGILfDLGvSS 170 (413)
|+++...|++.
T Consensus 86 d~vi~~ag~~~ 96 (250)
T PRK12939 86 DGLVNNAGITN 96 (250)
T ss_pred CEEEECCCCCC
Confidence 99999998754
No 224
>PRK06194 hypothetical protein; Provisional
Probab=80.32 E-value=10 Score=36.14 Aligned_cols=85 Identities=11% Similarity=0.150 Sum_probs=55.7
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
+..++ .|=|+||=-.++.+.+ .+.+|+.+|+++..++...+.+.... ++.++..+..+...+ ++...-..+.+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 34444 6777777777777665 34689999999887776544333223 788899998875433 32210011358
Q ss_pred cEEEEcCCCCcc
Q psy7191 160 DGIIMDVGISDS 171 (413)
Q Consensus 160 DGILfDLGvSS~ 171 (413)
|.++...|+++.
T Consensus 85 d~vi~~Ag~~~~ 96 (287)
T PRK06194 85 HLLFNNAGVGAG 96 (287)
T ss_pred CEEEECCCCCCC
Confidence 999999998664
No 225
>PRK07478 short chain dehydrogenase; Provisional
Probab=80.29 E-value=18 Score=33.77 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=54.1
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
+++++ .|-|+||=-.++.+.+ .+.+|+.+++++..++...+.+... .++.++..+..+.+.+ +++..-..+.+
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL 84 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 34554 6777777666776665 3469999999998877655444333 3788888888875432 22210011369
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|+++...|+.
T Consensus 85 d~li~~ag~~ 94 (254)
T PRK07478 85 DIAFNNAGTL 94 (254)
T ss_pred CEEEECCCCC
Confidence 9999999874
No 226
>KOG2899|consensus
Probab=79.72 E-value=4 Score=40.90 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND 132 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~ 132 (413)
+..++|.-|-+|==|.+|.+.+..-.|+|+|+|+.-|+.|++.+..+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 56789999999999999999987778999999999999998876543
No 227
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.63 E-value=9.2 Score=35.35 Aligned_cols=77 Identities=23% Similarity=0.293 Sum_probs=51.3
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
|=|.||-..++.+.+ .+.+|+++++++...+.....+...+ ++.++..++.+...+ ++...-..+.+|+++...
T Consensus 13 tG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 92 (239)
T PRK07666 13 TGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNA 92 (239)
T ss_pred EcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Confidence 667778888887765 35699999999887665433333333 788889988876543 332110113699999888
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 93 g~~ 95 (239)
T PRK07666 93 GIS 95 (239)
T ss_pred ccc
Confidence 874
No 228
>KOG1540|consensus
Probab=79.47 E-value=2.6 Score=42.45 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhccccc
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEH 354 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~ 354 (413)
..+++|..|..+||||||+.++-|--.|-..++.|...+....
T Consensus 192 h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 192 HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 3567899999999999999999999999889999888876543
No 229
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=79.22 E-value=2.3 Score=41.85 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=37.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcc
Q psy7191 301 GLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNV 351 (413)
Q Consensus 301 ALRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~ 351 (413)
.||... ..+.+|..+..+||||||++|+.|+.=+.-.++.++..+.
T Consensus 128 glrnv~-----d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~ 173 (238)
T COG2226 128 GLRNVT-----DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYY 173 (238)
T ss_pred hhhcCC-----CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHH
Confidence 466554 5788999999999999999999999998877777666544
No 230
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.07 E-value=15 Score=34.42 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=51.2
Q ss_pred CEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCccE
Q psy7191 87 VTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSIDG 161 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDG 161 (413)
++++ .|=|.||=-.++.+.+ .+.+|+.+++++.+.+.+++......++.++..+..+... .+.+..-..+.+|+
T Consensus 7 ~~~l-ItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~ 85 (263)
T PRK08226 7 KTAL-ITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDI 85 (263)
T ss_pred CEEE-EeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4444 5666666666666665 3568999999987555444443222378888888887544 33321111236899
Q ss_pred EEEcCCCC
Q psy7191 162 IIMDVGIS 169 (413)
Q Consensus 162 ILfDLGvS 169 (413)
++..-|++
T Consensus 86 vi~~ag~~ 93 (263)
T PRK08226 86 LVNNAGVC 93 (263)
T ss_pred EEECCCcC
Confidence 99988874
No 231
>PRK07677 short chain dehydrogenase; Provisional
Probab=79.06 E-value=12 Score=35.04 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=48.9
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChH---HHHHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfD 165 (413)
.|-|+||=..++.+.+ .+.+|+++|+++...+...+.+... .++.++..+..+.+ .++.+..-..+.+|+++..
T Consensus 6 ItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~ 85 (252)
T PRK07677 6 ITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINN 85 (252)
T ss_pred EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEEC
Confidence 5666666666666665 3469999999988776655444333 37888888876643 2232211011368999988
Q ss_pred CCC
Q psy7191 166 VGI 168 (413)
Q Consensus 166 LGv 168 (413)
-|+
T Consensus 86 ag~ 88 (252)
T PRK07677 86 AAG 88 (252)
T ss_pred CCC
Confidence 885
No 232
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=78.99 E-value=7 Score=38.53 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=49.5
Q ss_pred EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
.++|.-+|.||-+..+.+. .--.|+|+|+|+.|++.-+.+. +.. +++++-.++... + + ...+|.++.+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~---~~~-~~~~Di~~~~~~--~--~-~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANF---PNK-LIEGDITKIDEK--D--F-IPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhC---CCC-CccCccccCchh--h--c-CCCCCEEEeCCC
Confidence 4799999999999998765 2235789999999998866653 222 344554444321 1 1 136999998887
Q ss_pred CCc
Q psy7191 168 ISD 170 (413)
Q Consensus 168 vSS 170 (413)
|-.
T Consensus 72 Cq~ 74 (275)
T cd00315 72 CQP 74 (275)
T ss_pred Chh
Confidence 743
No 233
>PRK08251 short chain dehydrogenase; Provisional
Probab=78.93 E-value=12 Score=34.64 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=53.5
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhc-CC-C-CeEEEecCCCChHHH---HHhcCCCCCCccEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAA-ND-P-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGII 163 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~-~~-~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGIL 163 (413)
.|=|.||--.++++.+ .+.+|+.++++++.++.....+. .. . ++.++..+..+.+.+ +++..-..+.+|+++
T Consensus 7 ItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 86 (248)
T PRK08251 7 ITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVI 86 (248)
T ss_pred EECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 5777888888888776 24689999999988776544322 22 2 788899998876543 222111123699999
Q ss_pred EcCCCCc
Q psy7191 164 MDVGISD 170 (413)
Q Consensus 164 fDLGvSS 170 (413)
.+.|++.
T Consensus 87 ~~ag~~~ 93 (248)
T PRK08251 87 VNAGIGK 93 (248)
T ss_pred ECCCcCC
Confidence 9999853
No 234
>KOG2651|consensus
Probab=78.34 E-value=3.2 Score=43.90 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=56.3
Q ss_pred HHHHhHHhhhhhc---cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh
Q psy7191 52 KNLASLKRLSEDI---YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT 127 (413)
Q Consensus 52 ~~~~sl~~~~~n~---y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ 127 (413)
++.+++++|..+| |++|-=.-+.|++..+.+-.+-..+||...|-| |-..+|.-.-+..|+|||=+..+-++|++
T Consensus 117 ~~~sq~~~l~rkh~~~k~qhEi~~lselvSsi~~f~gi~~vvD~GaG~G-~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 117 SQSSQLTALFRKHVRPKKQHEIRRLSELVSSISDFTGIDQVVDVGAGQG-HLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hhhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHhhcCCCeeEEcCCCch-HHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4556667777665 567777778888888865555678999999999 66666655446799999999888887754
No 235
>PRK07201 short chain dehydrogenase; Provisional
Probab=77.56 E-value=27 Score=37.77 Aligned_cols=83 Identities=12% Similarity=0.180 Sum_probs=55.5
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
+++++ .|-|+||=-.++.+.+ .+.+|++++++++.++...+.+... .++.++..+.++.+.+ +++..-..+.+
T Consensus 371 ~k~vl-ItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 449 (657)
T PRK07201 371 GKVVL-ITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHV 449 (657)
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 34443 6777788778887776 3469999999998877654433322 3788899998876543 32210012369
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|.++.+.|+.
T Consensus 450 d~li~~Ag~~ 459 (657)
T PRK07201 450 DYLVNNAGRS 459 (657)
T ss_pred CEEEECCCCC
Confidence 9999999974
No 236
>KOG4589|consensus
Probab=76.80 E-value=3.3 Score=40.18 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=48.6
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC-CCChHH---HHHhcCCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK-FSDLPN---ILKNMNNNFN 157 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n-Fs~l~~---~L~~~~~~~~ 157 (413)
.+|+.+++||-+..|--|.---++. |+|.|+|+|+.+.. .-.-++++.++ +.+-.. +++.+ +..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------PPEGATIIQGNDVTDPETYRKIFEAL--PNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------CCCCcccccccccCCHHHHHHHHHhC--CCC
Confidence 4579999999999999999988887 99999999988531 11256667763 444322 22222 223
Q ss_pred CccEEE
Q psy7191 158 SIDGII 163 (413)
Q Consensus 158 ~VDGIL 163 (413)
.||.||
T Consensus 136 ~VdvVl 141 (232)
T KOG4589|consen 136 PVDVVL 141 (232)
T ss_pred cccEEE
Confidence 577777
No 237
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=76.70 E-value=13 Score=34.98 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=50.4
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfDLG 167 (413)
|-|+||=-.+|.+.+ .+.+|+.+|++++.++.+.+.+....++.++..+..+.+ +++++..-..+.+|.++.+.|
T Consensus 6 tGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 6 TASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred EcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 556666666676665 357899999999888776554433346778888877643 333321101246999999998
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
+.
T Consensus 86 ~~ 87 (259)
T PRK08340 86 NV 87 (259)
T ss_pred CC
Confidence 74
No 238
>PRK06197 short chain dehydrogenase; Provisional
Probab=76.30 E-value=24 Score=34.35 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=55.1
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhc-CC--CCeEEEecCCCChHHH---HHhcCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAA-ND--PRLVPVYGKFSDLPNI---LKNMNNNFN 157 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~-~~--~rv~~i~~nFs~l~~~---L~~~~~~~~ 157 (413)
+++++ .|-|+||=-.++.+.+ .+.+|+.++++++..+.+.+.+. .. .++.++..+..+...+ +++..-..+
T Consensus 16 ~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 16 GRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 44554 6777887777777765 24689999999877665443332 12 2788888888876543 332211123
Q ss_pred CccEEEEcCCCCc
Q psy7191 158 SIDGIIMDVGISD 170 (413)
Q Consensus 158 ~VDGILfDLGvSS 170 (413)
.+|+++.+.|+..
T Consensus 95 ~iD~li~nAg~~~ 107 (306)
T PRK06197 95 RIDLLINNAGVMY 107 (306)
T ss_pred CCCEEEECCcccc
Confidence 6999999999854
No 239
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=75.94 E-value=2.3 Score=33.25 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHH
Q psy7191 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNE 248 (413)
Q Consensus 202 lN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~ 248 (413)
||+.+.++|..++---|. ..|++|+++|...+++++..||..
T Consensus 10 vNta~~~~L~~~ipgig~-----~~a~~Il~~R~~~g~~~s~~dL~~ 51 (69)
T TIGR00426 10 INTATAEELQRAMNGVGL-----KKAEAIVSYREEYGPFKTVEDLKQ 51 (69)
T ss_pred CcCCCHHHHHhHCCCCCH-----HHHHHHHHHHHHcCCcCCHHHHHc
Confidence 788999999887555554 469999999965678998888855
No 240
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.75 E-value=22 Score=32.65 Aligned_cols=84 Identities=19% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
++.++ .|=|.||=-..+.+.+ .+.+|+.+|+++..++.+.+.+...+ ++.++..+.++...+ ++...-..+.+
T Consensus 5 ~~~~l-ItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (253)
T PRK08217 5 DKVIV-ITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL 83 (253)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 34444 5555566666666655 34689999999987766544433323 788888888775433 33211001368
Q ss_pred cEEEEcCCCCc
Q psy7191 160 DGIIMDVGISD 170 (413)
Q Consensus 160 DGILfDLGvSS 170 (413)
|+|+...|+..
T Consensus 84 d~vi~~ag~~~ 94 (253)
T PRK08217 84 NGLINNAGILR 94 (253)
T ss_pred CEEEECCCccC
Confidence 99999999743
No 241
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=75.72 E-value=8.4 Score=41.09 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=50.7
Q ss_pred CCEEEEEecCCchhHHHHHHhc----CCCEEEEEeCCHHHHHHHHhhh--cCC-CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI----GNVKVICLDRDKESFEKAKTLA--AND-PRLVPVYGKFSDLPNILKNMNNNFNS 158 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~----p~g~Via~DrD~~Al~~Ak~ll--~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~ 158 (413)
+.+++|.-+|.|-=+.+-+... ...+|||++..+.|....+++. ..+ ++|++++++-+++.- +.+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence 5799999999998887777664 2369999999999997766542 234 399999999887631 236
Q ss_pred ccEEE
Q psy7191 159 IDGII 163 (413)
Q Consensus 159 VDGIL 163 (413)
||.|+
T Consensus 259 vDIIV 263 (448)
T PF05185_consen 259 VDIIV 263 (448)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 89887
No 242
>PRK08643 acetoin reductase; Validated
Probab=75.63 E-value=19 Score=33.54 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=48.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|.||=-.+|.+.+ .+.+|+.+|+++...+.....+... .++.++..+..+.+.+ +++..-..+++|+++..
T Consensus 7 ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 86 (256)
T PRK08643 7 VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNN 86 (256)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4445555555555554 3468999999988776654433322 3688888888876532 33221112369999988
Q ss_pred CCC
Q psy7191 166 VGI 168 (413)
Q Consensus 166 LGv 168 (413)
.|+
T Consensus 87 ag~ 89 (256)
T PRK08643 87 AGV 89 (256)
T ss_pred CCC
Confidence 886
No 243
>PRK05867 short chain dehydrogenase; Provisional
Probab=75.03 E-value=14 Score=34.57 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
+++++ .|=|+||=-.++.+.+ .+.+|+.+|++++.++...+.++.. .++.++..++.+.+.+ +++..-..+.+
T Consensus 9 ~k~vl-VtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T PRK05867 9 GKRAL-ITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI 87 (253)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 34433 4556666666666665 3468999999998887755444333 3788888888775432 32211012369
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|+++.+.|+.
T Consensus 88 d~lv~~ag~~ 97 (253)
T PRK05867 88 DIAVCNAGII 97 (253)
T ss_pred CEEEECCCCC
Confidence 9999998874
No 244
>PRK07024 short chain dehydrogenase; Provisional
Probab=74.93 E-value=19 Score=33.87 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=50.0
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHH---HhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL---KNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L---~~~~~~~~~VDGILfDLG 167 (413)
|=|+||=-.++.+.+ .+.+|+.+|++++.++...+.+....++.++..+..+.+.+. ++..-..+.+|.++.+.|
T Consensus 8 tGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag 87 (257)
T PRK07024 8 TGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAG 87 (257)
T ss_pred EcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 556666666666665 346999999999887765443332227888999988765442 211001135899999988
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
+.
T Consensus 88 ~~ 89 (257)
T PRK07024 88 IS 89 (257)
T ss_pred cC
Confidence 74
No 245
>PRK06949 short chain dehydrogenase; Provisional
Probab=74.86 E-value=13 Score=34.51 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=49.5
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC-CCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~-~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
|-|+||=-.++.+.+ .+.+|++++++++.++.....+.. ..++.++..+..+.+.+ +.+..-..+.+|+++...
T Consensus 15 tGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~a 94 (258)
T PRK06949 15 TGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNS 94 (258)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 556666666666655 346899999999887665443332 23788888888765443 222111123689999888
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|++.
T Consensus 95 g~~~ 98 (258)
T PRK06949 95 GVST 98 (258)
T ss_pred CCCC
Confidence 8743
No 246
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=74.72 E-value=8.7 Score=35.77 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=47.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCC-----ChHHHHHhcCCCCCCccEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFS-----DLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs-----~l~~~L~~~~~~~~~VDGI 162 (413)
.|-|.||-..+++..+ .+.+|+++|++++..+...+.+... .++.++..+.. ++.++++...-..+.+|++
T Consensus 17 ItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~id~v 96 (247)
T PRK08945 17 VTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQFGRLDGV 96 (247)
T ss_pred EeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 4666677777776665 3469999999998776543333222 26666666553 2223322211111369999
Q ss_pred EEcCCCCc
Q psy7191 163 IMDVGISD 170 (413)
Q Consensus 163 LfDLGvSS 170 (413)
+...|++.
T Consensus 97 i~~Ag~~~ 104 (247)
T PRK08945 97 LHNAGLLG 104 (247)
T ss_pred EECCcccC
Confidence 99888743
No 247
>PRK06940 short chain dehydrogenase; Provisional
Probab=74.40 E-value=17 Score=35.00 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=48.7
Q ss_pred CCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEEcCCCC
Q psy7191 95 GDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 95 G~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDLGvS 169 (413)
|+||=-.++.+.+ .+.+|+.+|++++.++...+.++... ++.++..+.++.+. .+++.. ..+.+|+++.+-|+.
T Consensus 9 Ga~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~-~~g~id~li~nAG~~ 87 (275)
T PRK06940 9 GAGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ-TLGPVTGLVHTAGVS 87 (275)
T ss_pred CCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH-hcCCCCEEEECCCcC
Confidence 4456666666665 35789999999887766544333333 78888888877543 333321 124699999999984
No 248
>PRK07063 short chain dehydrogenase; Provisional
Probab=74.29 E-value=23 Score=33.25 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=52.5
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHH---HHHhcCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPN---ILKNMNNNFN 157 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~---~L~~~~~~~~ 157 (413)
+++++ .|=|.||=-.++.+.+ .+.+|+.+|++++.++...+.+.. . .++.++..+..+.+. .+++..-..+
T Consensus 7 ~k~vl-VtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVAL-VTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 34444 5556666666666665 346899999999888775544432 2 378888888876543 3332111123
Q ss_pred CccEEEEcCCCC
Q psy7191 158 SIDGIIMDVGIS 169 (413)
Q Consensus 158 ~VDGILfDLGvS 169 (413)
.+|+++.+.|+.
T Consensus 86 ~id~li~~ag~~ 97 (260)
T PRK07063 86 PLDVLVNNAGIN 97 (260)
T ss_pred CCcEEEECCCcC
Confidence 699999988874
No 249
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=74.08 E-value=30 Score=34.87 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=59.3
Q ss_pred HHhhhhhccCCccccchHhHHhccCCCCCCC---EEEEEecCCc--hhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhh
Q psy7191 57 LKRLSEDIYNKKYPRTFQTSASGLNDSSDDV---TMIDMTYGDG--NHTRLILENI--GNVKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 57 l~~~~~n~y~~H~pvll~evi~~L~~~~~~~---i~VDaTlG~G--GHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll 129 (413)
++.|.+-.|+.-|=-|.+.=++.+. ...++ .++ -.|.| -=|.-+|.+. +++.|.++|+||+|.+.++++.
T Consensus 90 ~~~L~~FpYy~nY~~L~~lE~~~l~-~~~~~~p~rVa--FIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv 166 (276)
T PF03059_consen 90 LDHLESFPYYPNYEKLVRLEYAALR-IHAGDPPSRVA--FIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLV 166 (276)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHH-HT-T--TT---EEE--EE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHh-hcCCcccceEE--EEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH
Confidence 4667788888888888888888885 33332 332 24555 3566666543 5678999999999999998876
Q ss_pred cC----CCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 130 AN----DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 130 ~~----~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+. ..+++++.++..+...-+. .+|.|++-.=|
T Consensus 167 ~~~~~L~~~m~f~~~d~~~~~~dl~-------~~DvV~lAalV 202 (276)
T PF03059_consen 167 ASDLGLSKRMSFITADVLDVTYDLK-------EYDVVFLAALV 202 (276)
T ss_dssp H---HH-SSEEEEES-GGGG-GG-----------SEEEE-TT-
T ss_pred hhcccccCCeEEEecchhccccccc-------cCCEEEEhhhc
Confidence 62 1389999888766543222 36666654433
No 250
>PRK06198 short chain dehydrogenase; Provisional
Probab=73.79 E-value=19 Score=33.64 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=49.8
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCE-EEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVK-VICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNS 158 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~-Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~ 158 (413)
+++++ .|=|.||=...+.+.+ .+.+ |+++|++++........+.... ++.++..++.+.+.+ ++...-..+.
T Consensus 6 ~k~vl-ItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 84 (260)
T PRK06198 6 GKVAL-VTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR 84 (260)
T ss_pred CcEEE-EeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 34444 4555566566666555 3456 9999999876654333232223 788888888875543 3221101135
Q ss_pred ccEEEEcCCCCc
Q psy7191 159 IDGIIMDVGISD 170 (413)
Q Consensus 159 VDGILfDLGvSS 170 (413)
+|+++...|++.
T Consensus 85 id~li~~ag~~~ 96 (260)
T PRK06198 85 LDALVNAAGLTD 96 (260)
T ss_pred CCEEEECCCcCC
Confidence 899998888753
No 251
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.66 E-value=22 Score=33.01 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=54.3
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHH---HhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNIL---KNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L---~~~~~~~~~V 159 (413)
+.+++ .|-|+||=-.++.+.+ .+..|+++++++...+...+.+...+ ++.++..++.+.+.+. .+..-..+.+
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 44555 6777777666776665 34689999999987766544443333 7888999998866442 2211011358
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|+++...|+.
T Consensus 86 d~vi~~ag~~ 95 (262)
T PRK13394 86 DILVSNAGIQ 95 (262)
T ss_pred CEEEECCccC
Confidence 9999888874
No 252
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=73.51 E-value=10 Score=36.68 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=47.6
Q ss_pred cchHhHHhccCCCCCCCEEEEEecCCchhHHHH---HHhc-CCCEEEEEeCCHHHHHHHHhhhcC-CCCeEEEecCCCCh
Q psy7191 71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLI---LENI-GNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDL 145 (413)
Q Consensus 71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aI---Le~~-p~g~Via~DrD~~Al~~Ak~ll~~-~~rv~~i~~nFs~l 145 (413)
+..+|++-.+. | .++|-+-.-.||=.... |+.+ ++++|+|+|+|.....+....... .+|+++++++=.+.
T Consensus 22 ~~~qeli~~~k---P-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 22 VAYQELIWELK---P-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp HHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSST
T ss_pred HHHHHHHHHhC---C-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCH
Confidence 34567777764 4 57788877788755543 5556 679999999987766553221111 25999999988777
Q ss_pred HHHHHhcCC-CCCCccEEEEc
Q psy7191 146 PNILKNMNN-NFNSIDGIIMD 165 (413)
Q Consensus 146 ~~~L~~~~~-~~~~VDGILfD 165 (413)
+.+..-..+ ......-|+.|
T Consensus 98 ~~~~~v~~~~~~~~~vlVilD 118 (206)
T PF04989_consen 98 EIVDQVRELASPPHPVLVILD 118 (206)
T ss_dssp HHHHTSGSS----SSEEEEES
T ss_pred HHHHHHHHhhccCCceEEEEC
Confidence 655432221 11234466666
No 253
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=73.01 E-value=19 Score=33.99 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=48.8
Q ss_pred EEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 90 VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
..+|-|-|.+...-|.. .+.+|+.+|++++.++...+.+...+ ++.++..+..+...+ +.+..-..+.+|+++..
T Consensus 16 tGa~~~iG~~ia~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ 94 (265)
T PRK07097 16 TGASYGIGFAIAKAYAK-AGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNN 94 (265)
T ss_pred eCCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 34444444443333322 34689999999988877655444333 788899988876543 22211112369999999
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
.|+++
T Consensus 95 ag~~~ 99 (265)
T PRK07097 95 AGIIK 99 (265)
T ss_pred CCCCC
Confidence 99743
No 254
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=72.82 E-value=28 Score=32.14 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=48.7
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
|-|+||--..+.+.+ .+.+|+++|+++...+.....+...+ ++.++..++.+...+ ++...-....+|+++..-
T Consensus 7 tGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 86 (255)
T TIGR01963 7 TGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDILVNNA 86 (255)
T ss_pred cCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 445565566666554 34589999999877666544333223 788899999886632 222110113589999888
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|+++
T Consensus 87 ~~~~ 90 (255)
T TIGR01963 87 GIQH 90 (255)
T ss_pred CCCC
Confidence 8753
No 255
>PRK05872 short chain dehydrogenase; Provisional
Probab=72.81 E-value=28 Score=33.91 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=53.5
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCcc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSID 160 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VD 160 (413)
+++++ .|-|.||=-.++.+.+ .+.+|+.++++++.++...+.+....++..+..+..+.+.+ +++..-..+.+|
T Consensus 9 gk~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 87 (296)
T PRK05872 9 GKVVV-VTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID 87 (296)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 45554 5667777777777766 35799999999988776544333223566666777765433 332110123699
Q ss_pred EEEEcCCCCc
Q psy7191 161 GIIMDVGISD 170 (413)
Q Consensus 161 GILfDLGvSS 170 (413)
+++.+.|+..
T Consensus 88 ~vI~nAG~~~ 97 (296)
T PRK05872 88 VVVANAGIAS 97 (296)
T ss_pred EEEECCCcCC
Confidence 9999999853
No 256
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=72.55 E-value=3.7 Score=37.55 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHH
Q psy7191 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNEL 249 (413)
Q Consensus 202 lN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~i 249 (413)
||+.|.+|| .-+--=| ...|.+|+.+|.+.+||.+..||..+
T Consensus 91 iNtAs~eeL-~~lpgIG-----~~kA~aIi~yRe~~G~f~sv~dL~~v 132 (149)
T COG1555 91 INTASAEEL-QALPGIG-----PKKAQAIIDYREENGPFKSVDDLAKV 132 (149)
T ss_pred ccccCHHHH-HHCCCCC-----HHHHHHHHHHHHHcCCCCcHHHHHhc
Confidence 799999999 4443334 45689999999888899999999863
No 257
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=72.19 E-value=3.7 Score=37.03 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
....+|..+.++|+|||+++|+.|.- ++.....++..
T Consensus 59 d~~~~l~ei~rvLkpGG~l~i~d~~~-~~~~~~~~~~~ 95 (160)
T PLN02232 59 DRLRAMKEMYRVLKPGSRVSILDFNK-SNQSVTTFMQG 95 (160)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCC-CChHHHHHHHH
Confidence 56788999999999999999999874 55555555444
No 258
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.18 E-value=19 Score=33.62 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=51.9
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~V 159 (413)
+..++ .|-|+||=..++.+.+ .+.+|+.+|++++.++...+.++... ++.++..+..+... ++++..-..+++
T Consensus 11 ~k~il-ItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 89 (256)
T PRK06124 11 GQVAL-VTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89 (256)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 34443 4556666666666554 35799999999887766444333333 78888888877543 333221112368
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|+++...|+.
T Consensus 90 d~vi~~ag~~ 99 (256)
T PRK06124 90 DILVNNVGAR 99 (256)
T ss_pred CEEEECCCCC
Confidence 9999888873
No 259
>PRK06181 short chain dehydrogenase; Provisional
Probab=71.78 E-value=44 Score=31.30 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=50.4
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|=|.||=..++.+.+ .+.+|+++|+++...+...+.+... .++.++..+..+...+ +....-..+.+|+++..
T Consensus 6 VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 85 (263)
T PRK06181 6 ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDILVNN 85 (263)
T ss_pred EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4556676666666654 3579999999987766544433332 3788888888776543 22210011358999998
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
.|+..
T Consensus 86 ag~~~ 90 (263)
T PRK06181 86 AGITM 90 (263)
T ss_pred CCccc
Confidence 88743
No 260
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=71.73 E-value=2.8 Score=32.49 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhcccCCeEEE
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLT 332 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~V 332 (413)
+..+.++..+..+|||||+++|
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7888999999999999999986
No 261
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.50 E-value=21 Score=33.03 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=52.0
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|.||=-.++.+.+ .+.+|+++|+++...+.....+... .++.++..++.+...+ ++...-..+.+|+++..
T Consensus 9 ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ 88 (258)
T PRK12429 9 VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNN 88 (258)
T ss_pred EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5666677677777765 3468999999998877654444333 3888999999886643 22211011358999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 89 a~~~ 92 (258)
T PRK12429 89 AGIQ 92 (258)
T ss_pred CCCC
Confidence 8864
No 262
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.39 E-value=30 Score=32.21 Aligned_cols=82 Identities=15% Similarity=0.295 Sum_probs=49.1
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCcc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSID 160 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VD 160 (413)
++.++ .|-|.||=...+.+.+ .+..|+++++++..++...+..... ++.++..++.+...+ +++..-...++|
T Consensus 11 ~~~vl-ItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 88 (264)
T PRK12829 11 GLRVL-VTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFGGLD 88 (264)
T ss_pred CCEEE-EeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 34433 4445555555555554 2468999999988766543332221 678888898876643 322110113699
Q ss_pred EEEEcCCCC
Q psy7191 161 GIIMDVGIS 169 (413)
Q Consensus 161 GILfDLGvS 169 (413)
+++...|++
T Consensus 89 ~vi~~ag~~ 97 (264)
T PRK12829 89 VLVNNAGIA 97 (264)
T ss_pred EEEECCCCC
Confidence 999998874
No 263
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=71.25 E-value=7.6 Score=37.98 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHhhcccCCeEEEE--Eccchh-hHHHHHHHhhc
Q psy7191 315 YAMIIAEKYLKPEGLLLTK--CNSIVE-DKIVKRHLTGN 350 (413)
Q Consensus 315 ~~L~~a~~~L~pgGrl~VI--SFHSLE-DRiVK~~f~~~ 350 (413)
..|..|..+|+|||+|+-- |++.-| ..+|..+++..
T Consensus 180 ~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 180 ELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 4889999999999999855 677778 44666666553
No 264
>PRK05866 short chain dehydrogenase; Provisional
Probab=71.14 E-value=19 Score=35.22 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=52.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChH---HHHHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfD 165 (413)
.|-|+||--.++.+.+ .+.+|+++|++++.++...+.+... .++.++..+..+.+ ++++...-..+.+|.++..
T Consensus 45 ItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~ 124 (293)
T PRK05866 45 LTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINN 124 (293)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 6777888888887776 3469999999998877654433322 36778888877654 3333210011369999999
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 125 AG~~ 128 (293)
T PRK05866 125 AGRS 128 (293)
T ss_pred CCCC
Confidence 8874
No 265
>KOG1499|consensus
Probab=71.05 E-value=11 Score=39.15 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=51.0
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
.+++++|.-+|.|=-|.+=++ ....+|||+|....| +.|.+.... +. .++++++.-.++ .| +.++||.
T Consensus 60 ~dK~VlDVGcGtGILS~F~ak-AGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-----P~eKVDi 130 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAK-AGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--EL-----PVEKVDI 130 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHH-hCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ec-----CccceeE
Confidence 588999999999954444333 345699999999888 777775543 33 789999988776 22 2357998
Q ss_pred EE
Q psy7191 162 II 163 (413)
Q Consensus 162 IL 163 (413)
|+
T Consensus 131 Iv 132 (346)
T KOG1499|consen 131 IV 132 (346)
T ss_pred Ee
Confidence 87
No 266
>PRK07890 short chain dehydrogenase; Provisional
Probab=70.31 E-value=29 Score=32.28 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=49.3
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD 165 (413)
.|=|+||=..++...+ .+.+|+.+|+++...+...+.+... .++.++..+..+... ++++..-..+.+|+++..
T Consensus 10 ItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ 89 (258)
T PRK07890 10 VSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDALVNN 89 (258)
T ss_pred EECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEEC
Confidence 5666666666666654 3469999999998776654443322 378888888876543 232211012368999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
-|+.
T Consensus 90 ag~~ 93 (258)
T PRK07890 90 AFRV 93 (258)
T ss_pred CccC
Confidence 8863
No 267
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=69.91 E-value=32 Score=31.57 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=48.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|+||=-.++...+ .+.+|+++++++..+....+.+... .++.++..+..+...+ +.+..-....+|+|+..
T Consensus 11 ItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ 90 (251)
T PRK12826 11 VTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRLDILVAN 90 (251)
T ss_pred EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 4555666556665554 2468999999987666544333322 3688899998886533 22211011258999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|..
T Consensus 91 ag~~ 94 (251)
T PRK12826 91 AGIF 94 (251)
T ss_pred CCCC
Confidence 8763
No 268
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=69.54 E-value=6 Score=37.44 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcccCCeEEEEEccch
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNSIV 338 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFHSL 338 (413)
++.+|..+..+|+|||+++|..|++-
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 56899999999999999999988863
No 269
>PRK07814 short chain dehydrogenase; Provisional
Probab=69.41 E-value=24 Score=33.33 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=47.9
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|+||=-.++.+.+ .+.+|+++|++++.++...+.+... .++.++..+..+.+.+ +++..-..+.+|+++-.
T Consensus 15 ItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 94 (263)
T PRK07814 15 VTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLDIVVNN 94 (263)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3445555555555544 3579999999998776644433322 3788888888876543 32210001368999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 95 Ag~~ 98 (263)
T PRK07814 95 VGGT 98 (263)
T ss_pred CCCC
Confidence 8763
No 270
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=69.24 E-value=5.4 Score=36.37 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEccchhhHHHHH
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKR 345 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~ 345 (413)
.+..+|..+..+|+|||+++++.++.........
T Consensus 121 ~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 154 (223)
T TIGR01934 121 DIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154 (223)
T ss_pred cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHH
Confidence 4567789999999999999999998877654433
No 271
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=69.20 E-value=25 Score=33.43 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=52.7
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|.||--.++...+ .+.+|+.+|++++..+...+.+.... ++.++..+..+...+ +++..-..+.+|+++..
T Consensus 15 VtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ 94 (278)
T PRK08277 15 ITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCDILING 94 (278)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5777777777777776 34699999999887766444333333 788889998875533 22210012369999999
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
-|+..
T Consensus 95 ag~~~ 99 (278)
T PRK08277 95 AGGNH 99 (278)
T ss_pred CCCCC
Confidence 99754
No 272
>PRK08339 short chain dehydrogenase; Provisional
Probab=68.96 E-value=39 Score=32.20 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=54.3
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC-CC-CeEEEecCCCChH---HHHHhcCCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN-DP-RLVPVYGKFSDLP---NILKNMNNNFNS 158 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~-~~-rv~~i~~nFs~l~---~~L~~~~~~~~~ 158 (413)
+++++ .|-|+||=-.++.+.+ .+.+|+.+|++++.++.+.+.+.. .+ ++.++..+..+.. .++++.. ..+.
T Consensus 8 ~k~~l-ItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~-~~g~ 85 (263)
T PRK08339 8 GKLAF-TTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK-NIGE 85 (263)
T ss_pred CCEEE-EeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-hhCC
Confidence 44433 5778888888888776 357999999999887765543322 23 7888888887654 3343321 1246
Q ss_pred ccEEEEcCCC
Q psy7191 159 IDGIIMDVGI 168 (413)
Q Consensus 159 VDGILfDLGv 168 (413)
+|.++.+.|+
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8999988875
No 273
>PRK05876 short chain dehydrogenase; Provisional
Probab=68.55 E-value=54 Score=31.60 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=54.3
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
+.+++ .|=|+||=-.++.+.+ .+.+|+..|+++..++.+.+.+.... ++.++..+..+.+.+ +.+..-..+.+
T Consensus 6 ~k~vl-VTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (275)
T PRK05876 6 GRGAV-ITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV 84 (275)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34444 6667777777777766 34689999999988876544443323 688888898876544 22210012368
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|+++-+-|+.
T Consensus 85 d~li~nAg~~ 94 (275)
T PRK05876 85 DVVFSNAGIV 94 (275)
T ss_pred CEEEECCCcC
Confidence 9999988875
No 274
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=68.49 E-value=6.9 Score=35.78 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
.++.+|..+.++|+|||++++..|.
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4778899999999999999997654
No 275
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.28 E-value=20 Score=33.42 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=47.9
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDL 166 (413)
|-|.||=-.++...+ .+.+|++++++++.++...+.++... ++.++..+..+... ++++..-..+++|+++...
T Consensus 13 tGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~a 92 (253)
T PRK06172 13 TGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNA 92 (253)
T ss_pred eCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 334555555555554 24689999999987776554443333 78888888876543 3322110123689999888
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|++
T Consensus 93 g~~ 95 (253)
T PRK06172 93 GIE 95 (253)
T ss_pred CCC
Confidence 864
No 276
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.06 E-value=31 Score=31.64 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=45.9
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDLG 167 (413)
|-|+||=...++..+ .+.+|+++++++.......+.+....++.++..+..+...+ +++..-..+.+|+|+...|
T Consensus 12 tGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 12 TGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred ECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 445555555555554 35689999999987766443332224788888888775543 3321101135899887766
Q ss_pred C
Q psy7191 168 I 168 (413)
Q Consensus 168 v 168 (413)
.
T Consensus 92 ~ 92 (237)
T PRK07326 92 V 92 (237)
T ss_pred C
Confidence 4
No 277
>KOG1500|consensus
Probab=68.06 E-value=18 Score=38.14 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=49.0
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
.+.+++|..+|.|=-| .+.......+|||+.-..-| ++|+++.+.. .|+++|.+.-.++. + ++++|.
T Consensus 177 ~~kiVlDVGaGSGILS-~FAaqAGA~~vYAvEAS~MA-qyA~~Lv~~N~~~~rItVI~GKiEdie-------L-PEk~Dv 246 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILS-FFAAQAGAKKVYAVEASEMA-QYARKLVASNNLADRITVIPGKIEDIE-------L-PEKVDV 246 (517)
T ss_pred CCcEEEEecCCccHHH-HHHHHhCcceEEEEehhHHH-HHHHHHHhcCCccceEEEccCcccccc-------C-chhccE
Confidence 4789999999999333 33333455799999986544 5677776642 29999999888763 2 357888
Q ss_pred EE
Q psy7191 162 II 163 (413)
Q Consensus 162 IL 163 (413)
|+
T Consensus 247 iI 248 (517)
T KOG1500|consen 247 II 248 (517)
T ss_pred EE
Confidence 77
No 278
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.88 E-value=42 Score=31.36 Aligned_cols=83 Identities=13% Similarity=0.170 Sum_probs=53.6
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
++.++ .|-|+||=-.++.+.+ .+.+|+++|+++..++...+.+...+ ++.++..+..+...+ ++...-..+.+
T Consensus 10 ~k~vl-ItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK07523 10 GRRAL-VTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI 88 (255)
T ss_pred CCEEE-EECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 34443 5667777777777766 35699999999987766544443323 688888888875432 22211112358
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|+++...|+.
T Consensus 89 d~li~~ag~~ 98 (255)
T PRK07523 89 DILVNNAGMQ 98 (255)
T ss_pred CEEEECCCCC
Confidence 9999887764
No 279
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=67.68 E-value=4.8 Score=32.81 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEE
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKC 334 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VIS 334 (413)
++.+.+|..+.+.|+|||+++|-+
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 667778999999999999998743
No 280
>PRK07454 short chain dehydrogenase; Provisional
Probab=67.57 E-value=28 Score=32.20 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=48.6
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
|=|+||=...+.+.+ .+.+|+++|+++...+...+.++.. .++.++..+..+.+.+ ++...-..+.+|+++...
T Consensus 12 tG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 91 (241)
T PRK07454 12 TGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNA 91 (241)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 555666666666665 3469999999988766544433322 3788889988876543 322110123589999888
Q ss_pred CC
Q psy7191 167 GI 168 (413)
Q Consensus 167 Gv 168 (413)
|+
T Consensus 92 g~ 93 (241)
T PRK07454 92 GM 93 (241)
T ss_pred Cc
Confidence 76
No 281
>PRK09072 short chain dehydrogenase; Provisional
Probab=67.50 E-value=26 Score=32.97 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=51.4
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|.||--..|...+ .+.+|+++|+++..++.....+..-.++.++..+..+...+ ++...- .+.+|+++..-
T Consensus 10 ItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~-~~~id~lv~~a 88 (263)
T PRK09072 10 LTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARARE-MGGINVLINNA 88 (263)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHh-cCCCCEEEECC
Confidence 4666677777777665 35699999999987766544332223788899998886543 221100 13689999888
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|+..
T Consensus 89 g~~~ 92 (263)
T PRK09072 89 GVNH 92 (263)
T ss_pred CCCC
Confidence 8743
No 282
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=66.15 E-value=11 Score=34.11 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHhhcccCCeEEEEEccch-hhHHHHHHHhh
Q psy7191 308 NELNELNYAMIIAEKYLKPEGLLLTKCNSIV-EDKIVKRHLTG 349 (413)
Q Consensus 308 ~EL~~L~~~L~~a~~~L~pgGrl~VISFHSL-EDRiVK~~f~~ 349 (413)
+...-++.+|..+..+|+|||+++++....- ++.+ ..++++
T Consensus 114 ~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~-~~~l~~ 155 (179)
T TIGR00537 114 DGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDT-FDKLDE 155 (179)
T ss_pred chHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHH-HHHHHh
Confidence 3345578899999999999999888764433 3333 334443
No 283
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.14 E-value=31 Score=31.64 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=48.2
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.++.+.+ .+.+|++++++++..+...+.+....++.++..++.+-+.+ +++.....+.+|+++...
T Consensus 10 ItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ii~~a 89 (238)
T PRK05786 10 IIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDGLVVTV 89 (238)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 3445555555555554 35699999999987766533332234688889998875543 322111123589999888
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|..
T Consensus 90 g~~ 92 (238)
T PRK05786 90 GGY 92 (238)
T ss_pred CCc
Confidence 763
No 284
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=65.83 E-value=11 Score=33.90 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=37.0
Q ss_pred EEEeCCHHHHHHHHhhhc--C---CCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191 113 ICLDRDKESFEKAKTLAA--N---DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISD 170 (413)
Q Consensus 113 ia~DrD~~Al~~Ak~ll~--~---~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS 170 (413)
.|+|.++.+++.|+++.. . ..++++++++..+++ ...+.+|+|+..+|...
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-------~~~~~fD~v~~~~~l~~ 56 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-------FDDCEFDAVTMGYGLRN 56 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-------CCCCCeeEEEecchhhc
Confidence 389999999999976543 1 137899999887763 22347999998776643
No 285
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=65.39 E-value=18 Score=37.11 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=62.4
Q ss_pred CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC--CEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEec
Q psy7191 66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN--VKVICLDRDKESFEKAKTLAAN--DP-RLVPVYG 140 (413)
Q Consensus 66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~--g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~ 140 (413)
+.|+--++.+.+..|..-...-.++|.++|.|-+-.-+|+..|. ..+.--|-+|..++..+++.+. .. -++|.++
T Consensus 116 k~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~ 195 (311)
T PF12147_consen 116 KVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEec
Confidence 45777788888888852223457899999999988888888875 6889999999999999887664 33 4488888
Q ss_pred CCCChHHH
Q psy7191 141 KFSDLPNI 148 (413)
Q Consensus 141 nFs~l~~~ 148 (413)
+--+-+.+
T Consensus 196 dAfd~~~l 203 (311)
T PF12147_consen 196 DAFDRDSL 203 (311)
T ss_pred CCCCHhHh
Confidence 74443333
No 286
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=65.23 E-value=3.8 Score=33.71 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
..++.++..+.++|+|||+++ ++||
T Consensus 99 ~~~~~~l~~~~~~Lk~gG~li-~~~~ 123 (124)
T TIGR02469 99 GLLQEILEAIWRRLRPGGRIV-LNAI 123 (124)
T ss_pred hhHHHHHHHHHHHcCCCCEEE-EEec
Confidence 345688999999999999965 4554
No 287
>PRK09291 short chain dehydrogenase; Provisional
Probab=65.10 E-value=45 Score=30.96 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=49.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
.|-|+||=-.+++..+ .+.+|+++++++...+...+..... .++.++..+..+...+..... ..+|.++.+.|+
T Consensus 7 VtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~id~vi~~ag~ 83 (257)
T PRK09291 7 ITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE---WDVDVLLNNAGI 83 (257)
T ss_pred EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc---CCCCEEEECCCc
Confidence 4556666666666654 3579999999987655443332222 368888899988776654332 269999998887
Q ss_pred C
Q psy7191 169 S 169 (413)
Q Consensus 169 S 169 (413)
+
T Consensus 84 ~ 84 (257)
T PRK09291 84 G 84 (257)
T ss_pred C
Confidence 4
No 288
>PRK06196 oxidoreductase; Provisional
Probab=64.30 E-value=21 Score=35.04 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=50.2
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.++.+.+ .+.+|++++++++..+.+.+.+ .++.++..+..+.+.+ +.+..-..+.+|.++.+.
T Consensus 31 ITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nA 107 (315)
T PRK06196 31 VTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRIDILINNA 107 (315)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 5777777777777765 3468999999988766543322 2477788888876543 332211124699999999
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 108 g~~ 110 (315)
T PRK06196 108 GVM 110 (315)
T ss_pred CCC
Confidence 974
No 289
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=64.17 E-value=49 Score=30.11 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=48.7
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|.||=-..|++.+ .+.+|+++++++...+.....+... .++.++..++.+...+ +++..-....+|+|+..
T Consensus 10 ItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 89 (246)
T PRK05653 10 VTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALDILVNN 89 (246)
T ss_pred EECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 5666676666666664 2357999999988776544333322 3788888998876533 33211011358999977
Q ss_pred CCC
Q psy7191 166 VGI 168 (413)
Q Consensus 166 LGv 168 (413)
.|.
T Consensus 90 ag~ 92 (246)
T PRK05653 90 AGI 92 (246)
T ss_pred CCc
Confidence 775
No 290
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=63.93 E-value=52 Score=36.52 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=54.1
Q ss_pred CCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhc-------C---CCCeEEEecCCCChHHHHHh
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAA-------N---DPRLVPVYGKFSDLPNILKN 151 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~-------~---~~rv~~i~~nFs~l~~~L~~ 151 (413)
+.|.+++ .|-|+||=-.++++.+ .+.+|++++|+++.++...+.+. . ..++.++.+++.+.+.+.+.
T Consensus 78 ~~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 3455443 4666666666666665 34689999999887765332111 1 12688999999998776554
Q ss_pred cCCCCCCccEEEEcCCCC
Q psy7191 152 MNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 152 ~~~~~~~VDGILfDLGvS 169 (413)
+ +.+|.|+..+|..
T Consensus 157 L----ggiDiVVn~AG~~ 170 (576)
T PLN03209 157 L----GNASVVICCIGAS 170 (576)
T ss_pred h----cCCCEEEEccccc
Confidence 3 3589999999875
No 291
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=63.78 E-value=10 Score=36.63 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=45.8
Q ss_pred EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
.+||+-+|.||-+..+-+.- --.|.|+|+|+.|.+.-+.+. + ..+.++-..++.. .++. .+|.++.=..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~---~--~~~~~Di~~~~~~----~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF---P--EVICGDITEIDPS----DLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH---T--EEEESHGGGCHHH----HHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc---c--ccccccccccccc----cccc-cceEEEeccC
Confidence 47999999999999987663 225789999999998876653 3 5666666665533 1111 3888885554
Q ss_pred C
Q psy7191 168 I 168 (413)
Q Consensus 168 v 168 (413)
|
T Consensus 71 C 71 (335)
T PF00145_consen 71 C 71 (335)
T ss_dssp -
T ss_pred C
Confidence 4
No 292
>PRK08324 short chain dehydrogenase; Validated
Probab=63.77 E-value=68 Score=35.64 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=87.6
Q ss_pred CCCCCCcccccc---cccCccHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCC
Q psy7191 6 LPGPSSTQFGLE---EHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLND 82 (413)
Q Consensus 6 ~~~~~~~~~~~~---~~~grdl~~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~ 82 (413)
.||-.---||+. .....|+.+..=..+..++.-|.-..+...|.-+-.|-+++.-. +...- .- .
T Consensus 352 ~~g~g~~~~g~~~~~a~~~~d~~~~~~~~~~~a~~~~~~~~l~~~~~f~i~~~~~e~a~-----------l~~~~-~~-~ 418 (681)
T PRK08324 352 IPGLGMFSFGKDKKTARVAADIYENAINVMRGAEAVGRYEPLSEQEAFDIEYWSLEQAK-----------LQRMP-KP-K 418 (681)
T ss_pred ECCCceEEeCCCHHHhhhhHHHHHHHHHHHhhhhhcCCccCCChhhhcceeeehhhhhh-----------hhcCC-CC-c
Confidence 466666667775 36777888888888888888777666654322221222222111 11000 00 0
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCC
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFN 157 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~ 157 (413)
.-++++++ .|-|+||=-.++...+ .+.+|+++|+++..++.+.+.+....++.++..+..+.+.+ +++..-..+
T Consensus 419 ~l~gk~vL-VTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 419 PLAGKVAL-VTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCCCEEE-EecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 12345544 6666677666666655 34689999999988776554332214678888888775533 332110123
Q ss_pred CccEEEEcCCCCc
Q psy7191 158 SIDGIIMDVGISD 170 (413)
Q Consensus 158 ~VDGILfDLGvSS 170 (413)
.+|.++-..|++.
T Consensus 498 ~iDvvI~~AG~~~ 510 (681)
T PRK08324 498 GVDIVVSNAGIAI 510 (681)
T ss_pred CCCEEEECCCCCC
Confidence 6899998888753
No 293
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=63.54 E-value=7.8 Score=36.02 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchhh
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVED 340 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLED 340 (413)
+.+..++..+..+|+|||+++++++.+-+|
T Consensus 111 ~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~ 140 (197)
T PRK11207 111 KTIPGLIANMQRCTKPGGYNLIVAAMDTAD 140 (197)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Confidence 467788999999999999998888777665
No 294
>PRK07062 short chain dehydrogenase; Provisional
Probab=63.48 E-value=34 Score=32.18 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=51.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhh-cCCC--CeEEEecCCCChHHH---HHhcCCCCCCccEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLA-ANDP--RLVPVYGKFSDLPNI---LKNMNNNFNSIDGII 163 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll-~~~~--rv~~i~~nFs~l~~~---L~~~~~~~~~VDGIL 163 (413)
.|-|.||--.++.+.+ .+.+|++++++++.++.+.+.+ +.++ ++.++..+..+.+.+ +++..-..+.+|+++
T Consensus 13 ItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li 92 (265)
T PRK07062 13 VTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGGVDMLV 92 (265)
T ss_pred EeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 4667777777777776 3579999999998877654433 2232 677888888876543 322110124699999
Q ss_pred EcCCC
Q psy7191 164 MDVGI 168 (413)
Q Consensus 164 fDLGv 168 (413)
.+.|+
T Consensus 93 ~~Ag~ 97 (265)
T PRK07062 93 NNAGQ 97 (265)
T ss_pred ECCCC
Confidence 99886
No 295
>PRK08263 short chain dehydrogenase; Provisional
Probab=63.28 E-value=39 Score=32.17 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=49.0
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDLG 167 (413)
|=|.||--.++.+.+ .+.+|+++|++++.++...+.. ..++.++..++.+...+ +....-..+.+|+++...|
T Consensus 9 tGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 86 (275)
T PRK08263 9 TGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY--GDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAG 86 (275)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc--cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 446666666776665 3468999999998876654432 13677788888775543 2221000136899999999
Q ss_pred CCc
Q psy7191 168 ISD 170 (413)
Q Consensus 168 vSS 170 (413)
+..
T Consensus 87 ~~~ 89 (275)
T PRK08263 87 YGL 89 (275)
T ss_pred Ccc
Confidence 863
No 296
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=63.18 E-value=16 Score=38.91 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=40.2
Q ss_pred hcCC-CEEEEEeCCHHHHHHHHhh-----hc--CC--CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 106 NIGN-VKVICLDRDKESFEKAKTL-----AA--ND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 106 ~~p~-g~Via~DrD~~Al~~Ak~l-----l~--~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
++|. ..+.-+|.||.+++.++.. +. .+ +|++++.++ --+|++..+ +.+|.++.||-
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD---Af~wlr~a~---~~fD~vIVDl~ 374 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD---AFQWLRTAA---DMFDVVIVDLP 374 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc---HHHHHHhhc---ccccEEEEeCC
Confidence 4584 7999999999999998731 11 12 499998765 235676543 36999998874
No 297
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.75 E-value=37 Score=31.48 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=48.6
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCC-HHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRD-KESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD-~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILf 164 (413)
.|=|.||=..++...+ .+..|+++|+. +...+...+.++.. .++.++..++.+...+ +++..-..+.+|+|+.
T Consensus 7 ItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (256)
T PRK12745 7 VTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVN 86 (256)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5667777777776665 34689999975 34433333333222 3788999999885433 2222111136899999
Q ss_pred cCCCCc
Q psy7191 165 DVGISD 170 (413)
Q Consensus 165 DLGvSS 170 (413)
..|+.+
T Consensus 87 ~ag~~~ 92 (256)
T PRK12745 87 NAGVGV 92 (256)
T ss_pred CCccCC
Confidence 988754
No 298
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=62.67 E-value=11 Score=35.47 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchhhHHH
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIV 343 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiV 343 (413)
..++.++..+..+|+|||+++++-++.-++++.
T Consensus 122 ~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~ 154 (187)
T PRK00107 122 ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIA 154 (187)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHH
Confidence 457789999999999999999999998777654
No 299
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=62.57 E-value=63 Score=30.22 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=49.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|=|+||=-.++.+.+ .+.+|+.+|+++..++.....+...+ ++.++..+..+.+.+ +.+..-..+.+|+++..
T Consensus 17 ItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ 96 (259)
T PRK08213 17 VTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVDILVNN 96 (259)
T ss_pred EECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 3445566666666554 34689999999887766554443333 788899999886544 22210001358999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|++
T Consensus 97 ag~~ 100 (259)
T PRK08213 97 AGAT 100 (259)
T ss_pred CCCC
Confidence 8874
No 300
>PRK06114 short chain dehydrogenase; Provisional
Probab=62.46 E-value=50 Score=30.98 Aligned_cols=83 Identities=8% Similarity=0.142 Sum_probs=51.4
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHH-HHHHHHhhhcCC-CCeEEEecCCCChHH---HHHhcCCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKE-SFEKAKTLAAND-PRLVPVYGKFSDLPN---ILKNMNNNFNS 158 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~-Al~~Ak~ll~~~-~rv~~i~~nFs~l~~---~L~~~~~~~~~ 158 (413)
+++++ .|-|.||=-.++.+.+ .+.+|+.+|+++. .++...+.+... .++.++..+..+.+. .+.+..-..++
T Consensus 8 ~k~~l-VtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 86 (254)
T PRK06114 8 GQVAF-VTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA 86 (254)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 44444 7778888888888776 3469999998753 333332222222 377888888876543 23221111246
Q ss_pred ccEEEEcCCCC
Q psy7191 159 IDGIIMDVGIS 169 (413)
Q Consensus 159 VDGILfDLGvS 169 (413)
+|+++...|+.
T Consensus 87 id~li~~ag~~ 97 (254)
T PRK06114 87 LTLAVNAAGIA 97 (254)
T ss_pred CCEEEECCCCC
Confidence 99999998874
No 301
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.46 E-value=42 Score=30.95 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=47.4
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
|=|+||=-.++...+ .+.+|+.+|+++.........+...+ ++.++..+..+.+.+ +....-....+|+++...
T Consensus 9 tGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~a 88 (250)
T TIGR03206 9 TGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNA 88 (250)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 334444445554443 24589999999887766544333333 788889988875543 222110113589999999
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|++.
T Consensus 89 g~~~ 92 (250)
T TIGR03206 89 GWDK 92 (250)
T ss_pred CCCC
Confidence 8853
No 302
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=62.10 E-value=43 Score=31.29 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=49.9
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDLG 167 (413)
|-|+||--.++.+.+ .+.+|+++|++++.++.....+. .++.++..+..+...+ +++..-..+.+|+++...|
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--cceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 667788788888776 34699999999887655433321 2688888888776543 3321101135899999888
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
++
T Consensus 84 ~~ 85 (248)
T PRK10538 84 LA 85 (248)
T ss_pred cc
Confidence 74
No 303
>PRK07109 short chain dehydrogenase; Provisional
Probab=62.07 E-value=37 Score=34.00 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=50.2
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|+||=-.++.+.+ .+.+|+.++++++.++...+.+.... ++.++..+..+.+.+ ++...-..+.+|.++.+
T Consensus 13 ITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInn 92 (334)
T PRK07109 13 ITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPIDTWVNN 92 (334)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence 4555555555555554 34689999999988876544433333 788888888876543 22211012369999999
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
-|++.
T Consensus 93 Ag~~~ 97 (334)
T PRK07109 93 AMVTV 97 (334)
T ss_pred CCcCC
Confidence 88753
No 304
>PRK07041 short chain dehydrogenase; Provisional
Probab=62.00 E-value=58 Score=29.73 Aligned_cols=73 Identities=8% Similarity=0.141 Sum_probs=47.6
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDLG 167 (413)
|=|.||=-.++.+.+ .+.+|++++++++.++...+.++...++.++..+..+.+.+ +++. +.+|+++...|
T Consensus 3 tGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----~~id~li~~ag 78 (230)
T PRK07041 3 VGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEA----GPFDHVVITAA 78 (230)
T ss_pred ecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhc----CCCCEEEECCC
Confidence 445555556666655 34689999999877665443332223688888888776544 4332 36899998888
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
+.
T Consensus 79 ~~ 80 (230)
T PRK07041 79 DT 80 (230)
T ss_pred CC
Confidence 74
No 305
>PRK08628 short chain dehydrogenase; Provisional
Probab=61.97 E-value=40 Score=31.47 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=47.6
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.++...+ .+.+|+.+++++...+..+++.+...++.++..++++...+ +++..-..+.+|+++...
T Consensus 12 ItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 91 (258)
T PRK08628 12 VTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNA 91 (258)
T ss_pred EeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3555555555555554 34688999999887744444332223788899999885543 332111113689999888
Q ss_pred CC
Q psy7191 167 GI 168 (413)
Q Consensus 167 Gv 168 (413)
|+
T Consensus 92 g~ 93 (258)
T PRK08628 92 GV 93 (258)
T ss_pred cc
Confidence 86
No 306
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=61.63 E-value=9.1 Score=35.52 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchh
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVE 339 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLE 339 (413)
+.+...+..+.++|+|||+++|+.+.+-+
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~~~~~~~ 138 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIVAAMDTA 138 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEecccC
Confidence 45677899999999999998888776543
No 307
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=61.09 E-value=6.6 Score=32.34 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhcccCCeEEEEE
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKC 334 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VIS 334 (413)
-...+++.+.++|+|||++++++
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEe
Confidence 45578999999999999999986
No 308
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=60.87 E-value=45 Score=30.49 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=44.7
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeC-CHHHHHHHHhhhcC-CCCeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDR-DKESFEKAKTLAAN-DPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~Dr-D~~Al~~Ak~ll~~-~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD 165 (413)
|-|+||=...+.+.+ ...+|+++.+ ++...+........ ..++.++..++.+... +++...-..+.+|+++.+
T Consensus 6 tG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 85 (242)
T TIGR01829 6 TGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNN 85 (242)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 344454445555544 2458898888 76655543222221 2378889999987543 232211012369999999
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|++
T Consensus 86 ag~~ 89 (242)
T TIGR01829 86 AGIT 89 (242)
T ss_pred CCCC
Confidence 9875
No 309
>PRK05650 short chain dehydrogenase; Provisional
Probab=60.20 E-value=47 Score=31.44 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=48.4
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
|-|.||=-.++.+.+ .+.+|+.+|++++.++.+...+... .++.++..++.+...+ ++...-..+.+|+++.+.
T Consensus 6 tGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~a 85 (270)
T PRK05650 6 TGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNA 85 (270)
T ss_pred ecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 445555555555554 3468999999988776654433332 3788889998876543 322110113689999988
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 86 g~~ 88 (270)
T PRK05650 86 GVA 88 (270)
T ss_pred CCC
Confidence 874
No 310
>PRK14968 putative methyltransferase; Provisional
Probab=60.20 E-value=17 Score=32.32 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
..+..+++.+..+|+|||.++++..--..-.-+.+++.+
T Consensus 125 ~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~ 163 (188)
T PRK14968 125 EVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEK 163 (188)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHH
Confidence 457889999999999999988764321112235556654
No 311
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=60.13 E-value=17 Score=35.35 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 307 NNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 307 N~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
.+-++.++..+..+..+|+|||++++.+-.+-.+. |...|++
T Consensus 189 ~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~-v~~~l~~ 230 (251)
T TIGR03704 189 ADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPL-AVEAFAR 230 (251)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHH-HHHHHHH
Confidence 35578889999999999999999998765554443 5556654
No 312
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.69 E-value=43 Score=30.67 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCchhHHHHHHhc--CCCEEEEE-eCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEcCC
Q psy7191 95 GDGNHTRLILENI--GNVKVICL-DRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 95 G~GGHS~aILe~~--p~g~Via~-DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDLG 167 (413)
|.||=-..+.+.+ .+.+|+.+ ++++...+...+.+.... ++.++..++.+.+.+ +....-..+.+|+++...|
T Consensus 13 asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 13 ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAG 92 (247)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3344444444433 24688888 999887765444333223 788899999887643 3221101125899998888
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
+.
T Consensus 93 ~~ 94 (247)
T PRK05565 93 IS 94 (247)
T ss_pred cC
Confidence 75
No 313
>PRK05717 oxidoreductase; Validated
Probab=59.48 E-value=67 Score=30.04 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=52.1
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCcc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSID 160 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VD 160 (413)
+++++ .|-|+||=-.++.+.+ .+.+|+.+|+++...+...+.+ ..++.++..+..+.+.+ +++..-..+.+|
T Consensus 10 ~k~vl-ItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 86 (255)
T PRK05717 10 GRVAL-VTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL--GENAWFIAMDVADEAQVAAGVAEVLGQFGRLD 86 (255)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 45555 7777777777777776 3469999999876544332222 13688888988875433 222110113589
Q ss_pred EEEEcCCCCc
Q psy7191 161 GIIMDVGISD 170 (413)
Q Consensus 161 GILfDLGvSS 170 (413)
+++..-|+..
T Consensus 87 ~li~~ag~~~ 96 (255)
T PRK05717 87 ALVCNAAIAD 96 (255)
T ss_pred EEEECCCccc
Confidence 9999988754
No 314
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=59.32 E-value=6.2 Score=36.52 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchhh-HHHHHHHhh
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVED-KIVKRHLTG 349 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLED-RiVK~~f~~ 349 (413)
..+...|..+...|+|||++++ .+..+|. +-+.+.+++
T Consensus 122 ~~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 122 EKLKEIISASWEIIKKGGRIVI-DAILLETVNNALSALEN 160 (198)
T ss_pred ccHHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHH
Confidence 4567789999999999999974 5556654 344555544
No 315
>PLN02253 xanthoxin dehydrogenase
Probab=59.10 E-value=45 Score=31.71 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|=|.||=-.++.+.+ .+.+|+.+|+++...+...+.+....++.++..+..+.+.+ +....-..+.+|+++...
T Consensus 23 ItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~li~~A 102 (280)
T PLN02253 23 VTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIMVNNA 102 (280)
T ss_pred EECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 6777777777777765 34699999999877665444333223788888888876543 222100123699999888
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 103 g~~ 105 (280)
T PLN02253 103 GLT 105 (280)
T ss_pred CcC
Confidence 863
No 316
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=58.87 E-value=52 Score=30.46 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=45.7
Q ss_pred CCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEcCCC
Q psy7191 95 GDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 95 G~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDLGv 168 (413)
|.||=..+|.+.+ .+.+|+.+++++...+...+.+.... ++.++..+..+.+.+ +....-..+.+|+++...|+
T Consensus 8 ~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 8 GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3444445554444 35689999999877665443333333 788888888875543 22211011358999998887
Q ss_pred C
Q psy7191 169 S 169 (413)
Q Consensus 169 S 169 (413)
+
T Consensus 88 ~ 88 (254)
T TIGR02415 88 A 88 (254)
T ss_pred C
Confidence 4
No 317
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=58.70 E-value=9.7 Score=37.17 Aligned_cols=28 Identities=18% Similarity=-0.041 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEccchh
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNSIVE 339 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFHSLE 339 (413)
....+|..+..+|+|||+++++.|..-+
T Consensus 160 d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 160 DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 4678899999999999999999987644
No 318
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=58.66 E-value=45 Score=31.18 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=47.5
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhh-cCC--CCeEEEecCCCChHHH---HHhcCCCCCCccEEEE
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLA-AND--PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIM 164 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll-~~~--~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILf 164 (413)
|-|+||=-.+|...+ .+.+|+.+|+++...+...+.+ +.+ .++.++..+..+.+.+ +.+..-..+.+|+++.
T Consensus 8 tG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~vv~ 87 (259)
T PRK12384 8 IGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVY 87 (259)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 445555555555554 3569999999988776643322 222 2688899888875432 2221101136899998
Q ss_pred cCCCCc
Q psy7191 165 DVGISD 170 (413)
Q Consensus 165 DLGvSS 170 (413)
.-|.+.
T Consensus 88 ~ag~~~ 93 (259)
T PRK12384 88 NAGIAK 93 (259)
T ss_pred CCCcCC
Confidence 888643
No 319
>PRK07576 short chain dehydrogenase; Provisional
Probab=58.39 E-value=45 Score=31.70 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=45.4
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChH---HHHHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfDL 166 (413)
|-|+||=-.++.+.+ .+.+|+++|++++.++...+.+... .++.++..+..+.+ .++++..-..+.+|+++...
T Consensus 15 tGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 15 VGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 445555555555554 3568999999988776543333222 36777777777644 33333110113589999877
Q ss_pred CC
Q psy7191 167 GI 168 (413)
Q Consensus 167 Gv 168 (413)
|.
T Consensus 95 g~ 96 (264)
T PRK07576 95 AG 96 (264)
T ss_pred CC
Confidence 74
No 320
>PRK08267 short chain dehydrogenase; Provisional
Probab=58.20 E-value=53 Score=30.78 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=48.9
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcC-CCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMN-NNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~-~~~~~VDGILfDL 166 (413)
|-|+||=-.++.+.+ ...+|+++|++++.++.....+. ..++.+++.++.+...+ +.... ...+++|+++-..
T Consensus 7 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~a 85 (260)
T PRK08267 7 TGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNA 85 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECC
Confidence 445555555555554 34699999999988776544332 13788899998886543 22210 0024689999998
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|+..
T Consensus 86 g~~~ 89 (260)
T PRK08267 86 GILR 89 (260)
T ss_pred CCCC
Confidence 8844
No 321
>PRK07831 short chain dehydrogenase; Provisional
Probab=57.93 E-value=50 Score=31.06 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=44.4
Q ss_pred hhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC-CC--CeEEEecCCCChH---HHHHhcCCCCCCccEEEEcCCCC
Q psy7191 98 NHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN-DP--RLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 98 GHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~-~~--rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfDLGvS 169 (413)
|=-.++.+.+ .+.+|+.+|++++.++.+.+.++. ++ ++.++..+..+.+ .+++...-..+.+|+++..-|+.
T Consensus 29 gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 108 (262)
T PRK07831 29 GIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGLG 108 (262)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4444444443 346899999999888776554432 22 6888888887654 33332100113689999988863
No 322
>PRK06500 short chain dehydrogenase; Provisional
Probab=57.92 E-value=55 Score=30.12 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=50.5
Q ss_pred EEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEE
Q psy7191 90 IDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIM 164 (413)
Q Consensus 90 VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILf 164 (413)
+=.|-|.||--.++.+.+ .+.+|++++++++.++...+.+ -.++.+++.+..+...+ ++...-..+.+|+++.
T Consensus 9 vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (249)
T PRK06500 9 ALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGRLDAVFI 86 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 445778888888888776 3469999999987765543322 12677788887775532 2211000136899998
Q ss_pred cCCCC
Q psy7191 165 DVGIS 169 (413)
Q Consensus 165 DLGvS 169 (413)
.-|++
T Consensus 87 ~ag~~ 91 (249)
T PRK06500 87 NAGVA 91 (249)
T ss_pred CCCCC
Confidence 88764
No 323
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.92 E-value=68 Score=31.51 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCC-HHHHHHHHhhhcCC-CCeEEEecCCCChH---HHHHhcCCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRD-KESFEKAKTLAAND-PRLVPVYGKFSDLP---NILKNMNNNFNS 158 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD-~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~---~~L~~~~~~~~~ 158 (413)
++++| .|-|+||=-.++.+.+ ...+|+..|+. +...+...+.+... .++.++..+..+.+ .+++...- .+.
T Consensus 12 ~k~~l-VTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~-~g~ 89 (306)
T PRK07792 12 GKVAV-VTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG-LGG 89 (306)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH-hCC
Confidence 45555 7777777777777665 34689999974 33443332222222 37888888888743 33332111 246
Q ss_pred ccEEEEcCCCC
Q psy7191 159 IDGIIMDVGIS 169 (413)
Q Consensus 159 VDGILfDLGvS 169 (413)
+|+++.+.|+.
T Consensus 90 iD~li~nAG~~ 100 (306)
T PRK07792 90 LDIVVNNAGIT 100 (306)
T ss_pred CCEEEECCCCC
Confidence 99999999874
No 324
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=57.88 E-value=46 Score=31.12 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=44.2
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfDLG 167 (413)
|=|+||=-.++.+.+ .+.+|+.+|+++...+...++.....++.++..+..+.+ .++++..-..+.+|.++.+.|
T Consensus 14 tGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 14 TGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRIDVLINNVG 93 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence 555565555565554 346899999997543333333222236777788777643 333321101236899998887
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
++
T Consensus 94 ~~ 95 (260)
T PRK12823 94 GT 95 (260)
T ss_pred cc
Confidence 53
No 325
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=57.64 E-value=42 Score=33.51 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=36.8
Q ss_pred hHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191 73 FQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA 130 (413)
Q Consensus 73 l~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~ 130 (413)
|+++.+.+-. ..+...++|..||.===+.-.+...|+..++|+|+|..+++.-...+.
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~ 150 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLA 150 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 4444444422 233679999988887555544655567899999999999998765443
No 326
>PRK07102 short chain dehydrogenase; Provisional
Probab=57.62 E-value=43 Score=31.01 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=47.5
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhh-cC-CCCeEEEecCCCChHH---HHHhcCCCCCCccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLA-AN-DPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll-~~-~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILf 164 (413)
.|-|+||=-.++.+.+ .+.+|+++|++++..+...+.+ .. ..++.++..+-.+... .+++.. ..+|+++.
T Consensus 6 ItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~---~~~d~vv~ 82 (243)
T PRK07102 6 IIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLP---ALPDIVLI 82 (243)
T ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHh---hcCCEEEE
Confidence 4556666666666665 2468999999998766533322 22 2378888888766543 444321 24799998
Q ss_pred cCCC
Q psy7191 165 DVGI 168 (413)
Q Consensus 165 DLGv 168 (413)
..|+
T Consensus 83 ~ag~ 86 (243)
T PRK07102 83 AVGT 86 (243)
T ss_pred CCcC
Confidence 8886
No 327
>PRK06138 short chain dehydrogenase; Provisional
Probab=57.59 E-value=60 Score=29.96 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=46.5
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDLG 167 (413)
|-|.||=-.++.+.+ .+.+|++++++++......+.+..-.++.++..+..+.+.+ +....-..+.+|+++...|
T Consensus 11 tG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 11 TGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 444455555555443 24689999999887665444332213688889888875543 2221000136899998888
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
++
T Consensus 91 ~~ 92 (252)
T PRK06138 91 FG 92 (252)
T ss_pred CC
Confidence 74
No 328
>PRK05599 hypothetical protein; Provisional
Probab=57.45 E-value=53 Score=30.93 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=50.3
Q ss_pred EecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC-CC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN-DP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~-~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD 165 (413)
.|=|++|=-.++.+.+ ...+|+..+++++.++.+.+.++. .. ++.++..+..+.+. .+++..-..+.+|.++.+
T Consensus 5 ItGas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n 84 (246)
T PRK05599 5 ILGGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISLAVVA 84 (246)
T ss_pred EEeCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4556666667777665 457899999999888775444433 22 57778777776543 333211012469999999
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 85 ag~~ 88 (246)
T PRK05599 85 FGIL 88 (246)
T ss_pred cCcC
Confidence 8874
No 329
>PRK09242 tropinone reductase; Provisional
Probab=57.43 E-value=55 Score=30.58 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=49.3
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhc-CC--CCeEEEecCCCChHHH---HHhcCCCCCCccEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAA-ND--PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGII 163 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~-~~--~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGIL 163 (413)
.|-|.||-...+.+.+ .+.+|+.++++++..+...+.+. .+ .++.++..++.+.+.+ +....-..+++|+++
T Consensus 14 ItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li 93 (257)
T PRK09242 14 ITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDGLHILV 93 (257)
T ss_pred EeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4555566666776665 35789999999887766443332 22 2788888888875432 222110123699999
Q ss_pred EcCCCC
Q psy7191 164 MDVGIS 169 (413)
Q Consensus 164 fDLGvS 169 (413)
...|+.
T Consensus 94 ~~ag~~ 99 (257)
T PRK09242 94 NNAGGN 99 (257)
T ss_pred ECCCCC
Confidence 888873
No 330
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=57.40 E-value=50 Score=34.02 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=48.1
Q ss_pred cCCchhHHHHHHhcC--CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191 94 YGDGNHTRLILENIG--NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 94 lG~GGHS~aILe~~p--~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf 164 (413)
+|+|.-...+.+.+. +..|+.+|.|++.++..++.. ..+.++.++-.+. +.|.+.++. .+|.++.
T Consensus 237 iG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~-~~L~~~~~~--~a~~vi~ 303 (453)
T PRK09496 237 VGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---PNTLVLHGDGTDQ-ELLEEEGID--EADAFIA 303 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---CCCeEEECCCCCH-HHHHhcCCc--cCCEEEE
Confidence 688888888888873 468999999999888765532 3466788888876 456556653 6888884
No 331
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=57.34 E-value=11 Score=36.93 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=33.6
Q ss_pred hHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCC
Q psy7191 75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRD 118 (413)
Q Consensus 75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD 118 (413)
|++...- .++|.++||.--|+|..|.-|-... |.|+||++==+
T Consensus 39 E~L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 39 EVLAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred ceeEEec-cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 5666665 8899999999999997776555554 78999998544
No 332
>PRK07774 short chain dehydrogenase; Provisional
Probab=57.25 E-value=79 Score=29.20 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=49.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|.||=-.++.+.+ .+.+|+++|+++.......+.+... .++..+..+..+...+ +....-..+.+|+++..
T Consensus 11 ItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 90 (250)
T PRK07774 11 VTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNN 90 (250)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 5556666666666655 3469999999988776654433322 2677788888776532 22110001258999999
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
-|+.
T Consensus 91 ag~~ 94 (250)
T PRK07774 91 AAIY 94 (250)
T ss_pred CCCc
Confidence 9984
No 333
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=57.06 E-value=63 Score=30.15 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=48.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|+||=-.++.+.+ ...+|+.+|+++..+....+.+... .++.++..+.++.+.+ +....-..+.+|+++..
T Consensus 14 ItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 93 (254)
T PRK08085 14 ITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINN 93 (254)
T ss_pred EECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4556666666666665 3469999999988776654333322 2677777787765432 22211012368999998
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 94 ag~~ 97 (254)
T PRK08085 94 AGIQ 97 (254)
T ss_pred CCcC
Confidence 8874
No 334
>PRK07825 short chain dehydrogenase; Provisional
Probab=57.02 E-value=53 Score=31.07 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=50.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.++.+.+ .+..|+..+++++.++...+.+ .++.++..++.+.+.+ ++...-..+.+|+++.+.
T Consensus 10 VtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~a 86 (273)
T PRK07825 10 ITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL---GLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNA 86 (273)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---ccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 6777777777777765 3568999999998876644332 2577788888876543 222110113689999999
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|+..
T Consensus 87 g~~~ 90 (273)
T PRK07825 87 GVMP 90 (273)
T ss_pred CcCC
Confidence 9853
No 335
>KOG1709|consensus
Probab=56.49 E-value=36 Score=33.95 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=56.9
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
.+|+.++..-||.|=-.++|=++-|.-+ +-|..-|..+++-+..--... +|.++.+...+.-.-|. .+.||||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~-----d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLP-----DKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhcccc-----ccCccee
Confidence 5789999999999977777766656544 668999999988665322222 89999888876533332 3469999
Q ss_pred EEcCC
Q psy7191 163 IMDVG 167 (413)
Q Consensus 163 LfDLG 167 (413)
++|-=
T Consensus 174 ~yDTy 178 (271)
T KOG1709|consen 174 YYDTY 178 (271)
T ss_pred Eeech
Confidence 99963
No 336
>PRK06720 hypothetical protein; Provisional
Probab=56.45 E-value=1.2e+02 Score=27.61 Aligned_cols=81 Identities=21% Similarity=0.112 Sum_probs=49.6
Q ss_pred EEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEE
Q psy7191 89 MIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGI 162 (413)
Q Consensus 89 ~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGI 162 (413)
++=.|-|+||=-.++...+ .+.+|+.+|+++..++.+.+.+... .++.++..+.++..++ +++.--..+.+|++
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~iDil 97 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRIDML 97 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4455666666556665554 3478999999988876654333222 3667777887765433 22110012469999
Q ss_pred EEcCCCC
Q psy7191 163 IMDVGIS 169 (413)
Q Consensus 163 LfDLGvS 169 (413)
+-+-|+.
T Consensus 98 VnnAG~~ 104 (169)
T PRK06720 98 FQNAGLY 104 (169)
T ss_pred EECCCcC
Confidence 9998863
No 337
>PRK08589 short chain dehydrogenase; Validated
Probab=55.99 E-value=59 Score=31.05 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=47.5
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|.||=-.+|...+ .+.+|+++|+++...+..++..+...++.++..+..+...+ +++..-..+.+|.++.+.
T Consensus 11 ItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A 90 (272)
T PRK08589 11 ITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNA 90 (272)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCcCEEEECC
Confidence 4666676667776665 35799999999433333333322223788888888765433 332211123699999999
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 91 g~~ 93 (272)
T PRK08589 91 GVD 93 (272)
T ss_pred CCC
Confidence 874
No 338
>PRK06125 short chain dehydrogenase; Provisional
Probab=55.85 E-value=59 Score=30.50 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=47.6
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC-CC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN-DP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~-~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILf 164 (413)
.|-|+||=..++...+ .+.+|+++|++++..+...+.+.. .. ++.++..+..+.+. +++.. +.+|+++.
T Consensus 12 ItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~----g~id~lv~ 87 (259)
T PRK06125 12 ITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEA----GDIDILVN 87 (259)
T ss_pred EeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHh----CCCCEEEE
Confidence 4445555555555544 346999999998877665443332 23 78888888877554 34332 36999998
Q ss_pred cCCC
Q psy7191 165 DVGI 168 (413)
Q Consensus 165 DLGv 168 (413)
.-|+
T Consensus 88 ~ag~ 91 (259)
T PRK06125 88 NAGA 91 (259)
T ss_pred CCCC
Confidence 8887
No 339
>PRK08278 short chain dehydrogenase; Provisional
Probab=55.42 E-value=59 Score=31.13 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=49.4
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHH-------HHHHHhhhcCCC-CeEEEecCCCChHHH---HHhc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKES-------FEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNM 152 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~A-------l~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~ 152 (413)
+.+++ .|-|+||=-.+|.+.+ .+..|+++|++... ++.+.+.+...+ ++.++..+..+...+ +.+.
T Consensus 6 ~k~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 84 (273)
T PRK08278 6 GKTLF-ITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA 84 (273)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 34444 6666776666666655 24689999997642 332222222233 788888988876533 2221
Q ss_pred CCCCCCccEEEEcCCCC
Q psy7191 153 NNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 153 ~~~~~~VDGILfDLGvS 169 (413)
.-..+.+|+++...|+.
T Consensus 85 ~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 85 VERFGGIDICVNNASAI 101 (273)
T ss_pred HHHhCCCCEEEECCCCc
Confidence 00113699999998874
No 340
>KOG1975|consensus
Probab=54.55 E-value=13 Score=38.69 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll 129 (413)
.+++..+.|..||-||+-..-... .-+.+||+|+-...++.|+++-
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RY 160 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRY 160 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHH
Confidence 467888999999999998877644 3368999999999999887653
No 341
>PRK06139 short chain dehydrogenase; Provisional
Probab=53.63 E-value=59 Score=32.76 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=53.2
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
++++| .|=|.||=-.++.+.+ .+.+|+.++++++.++...+.+...+ ++.++..+.++.+.+ +++..-..+.+
T Consensus 7 ~k~vl-ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (330)
T PRK06139 7 GAVVV-ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI 85 (330)
T ss_pred CCEEE-EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 34433 5666666666666665 35789999999998877655443333 777788888765433 22210001469
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|.++.+.|+.
T Consensus 86 D~lVnnAG~~ 95 (330)
T PRK06139 86 DVWVNNVGVG 95 (330)
T ss_pred CEEEECCCcC
Confidence 9999999985
No 342
>PRK05854 short chain dehydrogenase; Provisional
Probab=53.46 E-value=71 Score=31.52 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=54.3
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhh-cCC--CCeEEEecCCCChHHH---HHhcCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLA-AND--PRLVPVYGKFSDLPNI---LKNMNNNFN 157 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll-~~~--~rv~~i~~nFs~l~~~---L~~~~~~~~ 157 (413)
+.++| .|-|+||=-.++.+.+ .+.+|+..+|+++..+.+.+.+ +.. .++.++..+.++++.+ .++..-..+
T Consensus 14 gk~~l-ITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAV-VTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 34444 6666777667776665 3579999999988766654333 222 2688888888886644 222111124
Q ss_pred CccEEEEcCCCCc
Q psy7191 158 SIDGIIMDVGISD 170 (413)
Q Consensus 158 ~VDGILfDLGvSS 170 (413)
.+|.++.+.|+..
T Consensus 93 ~iD~li~nAG~~~ 105 (313)
T PRK05854 93 PIHLLINNAGVMT 105 (313)
T ss_pred CccEEEECCcccc
Confidence 6999999999854
No 343
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=53.32 E-value=34 Score=32.76 Aligned_cols=57 Identities=26% Similarity=0.266 Sum_probs=43.6
Q ss_pred EEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecC-CCCh
Q psy7191 89 MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGK-FSDL 145 (413)
Q Consensus 89 ~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~n-Fs~l 145 (413)
+.|+.+-=|.=..+++++..--++||.|+-+..++.|++.++.+. ++.+..++ |+.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l 61 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL 61 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc
Confidence 478888888778888887655689999999999999998776542 88888887 6543
No 344
>PRK06914 short chain dehydrogenase; Provisional
Probab=53.30 E-value=69 Score=30.34 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=48.1
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHH--HhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNIL--KNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L--~~~~~~~~~VDGILfD 165 (413)
|-|+||=-.++.+.+ .+.+|++++++++..+...+.... . .++.++..+..+...+- .+.--..+.+|+++..
T Consensus 9 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~vv~~ 88 (280)
T PRK06914 9 TGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRIDLLVNN 88 (280)
T ss_pred ECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCeeEEEEC
Confidence 444555555555443 346899999999877665433221 2 37889999998865432 2110001368999999
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
.|++.
T Consensus 89 ag~~~ 93 (280)
T PRK06914 89 AGYAN 93 (280)
T ss_pred Ccccc
Confidence 98865
No 345
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=53.28 E-value=24 Score=37.13 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcccCCeEEEEEccch---h-hHHHHHHHhh
Q psy7191 314 NYAMIIAEKYLKPEGLLLTKCNSIV---E-DKIVKRHLTG 349 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VISFHSL---E-DRiVK~~f~~ 349 (413)
...|..+..+|+|||+|+. |-+|+ | +..|..+++.
T Consensus 359 ~~iL~~a~~~LkpGG~lvy-stcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 359 LEILESVAQYLKKGGILVY-STCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred HHHHHHHHHHcCCCCEEEE-EcCCCChhhhHHHHHHHHHh
Confidence 4578999999999999974 33555 5 4477888876
No 346
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=53.01 E-value=71 Score=30.02 Aligned_cols=76 Identities=18% Similarity=0.327 Sum_probs=47.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.++.+.+ .+.+|+.+|++++.++...+.+ -.++.++..+..+.. ..+++.--..+.+|+++.+.
T Consensus 11 VtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~a 88 (263)
T PRK06200 11 ITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF--GDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNA 88 (263)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3555666666666665 3468999999988776544332 126777888877644 33332111123699999999
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 89 g~~ 91 (263)
T PRK06200 89 GIW 91 (263)
T ss_pred CCc
Confidence 974
No 347
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.60 E-value=76 Score=29.18 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=45.9
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHH---HhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL---KNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L---~~~~~~~~~VDGILfDLG 167 (413)
|-|+||=-.++.+.+ .+.+|+++++++...+.....+....++.++..+..+...+- .+..-....+|+|+...|
T Consensus 11 tGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 11 TGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAG 90 (251)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 333444444444443 245899999999776654443332236888999988766542 221001135899998888
Q ss_pred CC
Q psy7191 168 IS 169 (413)
Q Consensus 168 vS 169 (413)
++
T Consensus 91 ~~ 92 (251)
T PRK07231 91 TT 92 (251)
T ss_pred CC
Confidence 74
No 348
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=52.31 E-value=21 Score=33.31 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcccCCeEEEEEccchhhHHHHHH
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRH 346 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~ 346 (413)
...+|..+..+|+|||+++++.++.-.-...+.+
T Consensus 130 ~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 163 (231)
T TIGR02752 130 YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQL 163 (231)
T ss_pred HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHH
Confidence 3467888999999999999998876544444443
No 349
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=51.79 E-value=1.2e+02 Score=28.35 Aligned_cols=78 Identities=8% Similarity=0.052 Sum_probs=48.9
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHH---HhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNIL---KNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L---~~~~~~~~~VDGILfD 165 (413)
.|-|.||=-.++.+.+ .+.+|+.+|+++...+.....++... ++.++..++.+.+.+. ....-..+.+|+++..
T Consensus 16 VtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~d~li~~ 95 (255)
T PRK06113 16 ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKVDILVNN 95 (255)
T ss_pred EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3445555555555554 34689999999888776544333333 7888889988766432 2110011368999998
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 96 ag~~ 99 (255)
T PRK06113 96 AGGG 99 (255)
T ss_pred CCCC
Confidence 8863
No 350
>PRK06101 short chain dehydrogenase; Provisional
Probab=51.45 E-value=84 Score=29.22 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=46.2
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.++.+.+ .+.+|+++|++++.++...+. ..++.++..+..+.+. .+++.. ..+|.++.+.
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~---~~~d~~i~~a 79 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ---SANIFTLAFDVTDHPGTKAALSQLP---FIPELWIFNA 79 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh---cCCCeEEEeeCCCHHHHHHHHHhcc---cCCCEEEEcC
Confidence 4666666666666665 346899999998876543322 2357778888776554 444332 1367888887
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|..
T Consensus 80 g~~ 82 (240)
T PRK06101 80 GDC 82 (240)
T ss_pred ccc
Confidence 753
No 351
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.39 E-value=30 Score=34.43 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=34.5
Q ss_pred HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHH
Q psy7191 74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKE 120 (413)
Q Consensus 74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~ 120 (413)
...++...=.-+|.+++|.-.-+||-|.-+|++- -.+|||+|+--.
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~ 113 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYG 113 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCC
Confidence 3344444313458899999999999999999883 358999998753
No 352
>PRK14967 putative methyltransferase; Provisional
Probab=51.38 E-value=19 Score=34.00 Aligned_cols=37 Identities=30% Similarity=0.153 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEE--ccchhhHHHHHHHhh
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKC--NSIVEDKIVKRHLTG 349 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VIS--FHSLEDRiVK~~f~~ 349 (413)
.-++.++..+..+|+|||++++++ ++.++ .+.+.++.
T Consensus 136 ~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~--~~~~~l~~ 174 (223)
T PRK14967 136 AVLDRLCDAAPALLAPGGSLLLVQSELSGVE--RTLTRLSE 174 (223)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccCHH--HHHHHHHH
Confidence 457889999999999999998752 33333 34455554
No 353
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=51.36 E-value=54 Score=34.32 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=71.6
Q ss_pred CEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCC---C-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAND---P-RLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~---~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
-.++|+..|.|=-+...+...++ .+|++-|+|++|.+..+++++.. . ++++.+. +...+|... ...+|.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~---DAn~ll~~~---~~~fD~ 124 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNM---DANVLLYSR---QERFDV 124 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES----HHHHHCHS---TT-EEE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehh---hHHHHhhhc---cccCCE
Confidence 47999999999888888888654 79999999999999988775421 1 3555443 334445221 236898
Q ss_pred EEEc-CCCCccCcc-CCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCC----chHHHHHHHH
Q psy7191 162 IIMD-VGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEE----KRSRQIARAI 230 (413)
Q Consensus 162 ILfD-LGvSS~Qld-~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE----~~a~rIA~aI 230 (413)
|=+| +|-.++=|| +=+.-. .+|-| .+||-|.=--.. .....-|+.||-- ++...+|=.|
T Consensus 125 IDlDPfGSp~pfldsA~~~v~--~gGll-------~vTaTD~a~L~G-~~~~~~~r~Yg~~~~~~~~~~E~glRi 189 (377)
T PF02005_consen 125 IDLDPFGSPAPFLDSALQAVK--DGGLL-------CVTATDTAVLCG-SYPEKCFRKYGAVPRKTPYCHEMGLRI 189 (377)
T ss_dssp EEE--SS--HHHHHHHHHHEE--EEEEE-------EEEE--HHHHTT-SSHHHHHHHHSSB---STTHHHHHHHH
T ss_pred EEeCCCCCccHhHHHHHHHhh--cCCEE-------EEeccccccccC-CChhHHHHhcCCcccCCCcccHHHHHH
Confidence 8877 577767666 433221 12222 334433211111 1223678999964 3555555443
No 354
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=51.35 E-value=26 Score=35.28 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 307 NNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 307 N~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
++-|+..+..+..+..+|+|||++++-.-++-+ .|.+.|.+
T Consensus 236 ~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~--~~~~~~~~ 276 (307)
T PRK11805 236 DDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRV--HLEEAYPD 276 (307)
T ss_pred CchHHHHHHHHHHHHHhcCCCCEEEEEECcCHH--HHHHHHhh
Confidence 345677888999999999999999998777754 37666765
No 355
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=51.33 E-value=47 Score=32.78 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=45.7
Q ss_pred cCCchhHHHHHHhc-----CCCEEEEEeCCHHH-HHHHHhhhc---CCC-CeEEEecC-CCChHHHHHhcCCCCCCccEE
Q psy7191 94 YGDGNHTRLILENI-----GNVKVICLDRDKES-FEKAKTLAA---NDP-RLVPVYGK-FSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 94 lG~GGHS~aILe~~-----p~g~Via~DrD~~A-l~~Ak~ll~---~~~-rv~~i~~n-Fs~l~~~L~~~~~~~~~VDGI 162 (413)
=||.|.|+.++-.. .+.+|.-||-||.- +..=.++.. .++ ++.++..+ -..++..+++..- ..+|.|
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~--~~~d~V 87 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEA--SGFDFV 87 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHh--cCCCEE
Confidence 37778888876543 35799999999853 222112211 123 55554432 3345555554321 248999
Q ss_pred EEcC-CCCccCcc
Q psy7191 163 IMDV-GISDSQAN 174 (413)
Q Consensus 163 LfDL-GvSS~Qld 174 (413)
|+|| |.+|.=.+
T Consensus 88 lvDleG~as~~~~ 100 (231)
T PF07015_consen 88 LVDLEGGASELND 100 (231)
T ss_pred EEeCCCCCchhHH
Confidence 9999 77665433
No 356
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=50.65 E-value=9.1 Score=30.81 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcccCCeE
Q psy7191 311 NELNYAMIIAEKYLKPEGLL 330 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl 330 (413)
+.++.+|..+.++|+|||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 67789999999999999986
No 357
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=50.60 E-value=29 Score=34.41 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 308 NELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 308 ~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
+-++..+..+..+.++|+|||++++-.-++-| -|++.|.+
T Consensus 225 dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~--~v~~~~~~ 264 (284)
T TIGR03533 225 DGLDLVRRILAEAADHLNENGVLVVEVGNSME--ALEEAYPD 264 (284)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEECcCHH--HHHHHHHh
Confidence 44677788999999999999999987777775 57777765
No 358
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=50.51 E-value=90 Score=29.37 Aligned_cols=81 Identities=10% Similarity=0.116 Sum_probs=50.9
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSI 159 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~V 159 (413)
+++++ .|=|+||=-.++.+.+ .+.+|++++++.. +...+.++.. .++.++..+..+.+.+ +++..-..+++
T Consensus 8 ~k~~l-ItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 8 GKVAI-ITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 45544 7778888888888876 4578999998753 2222222222 3788888888775533 33210012369
Q ss_pred cEEEEcCCCC
Q psy7191 160 DGIIMDVGIS 169 (413)
Q Consensus 160 DGILfDLGvS 169 (413)
|.++.+.|+.
T Consensus 85 D~lv~~ag~~ 94 (251)
T PRK12481 85 DILINNAGII 94 (251)
T ss_pred CEEEECCCcC
Confidence 9999888873
No 359
>PRK08265 short chain dehydrogenase; Provisional
Probab=50.33 E-value=81 Score=29.79 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=48.9
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|.||=-.++.+.+ .+.+|+.+|++++.++...+.+ ..++.++..+..+.+.+ +....-..+.+|+++.+.
T Consensus 11 ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~a 88 (261)
T PRK08265 11 VTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGRVDILVNLA 88 (261)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 5666677667776665 3469999999987665543322 13688888888875433 222100123689999998
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 89 g~~ 91 (261)
T PRK08265 89 CTY 91 (261)
T ss_pred CCC
Confidence 863
No 360
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=50.32 E-value=11 Score=34.85 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=23.9
Q ss_pred ecCCchhHHHHHHhcCC--------CEEEEEeCCHHHHHHHHh
Q psy7191 93 TYGDGNHTRLILENIGN--------VKVICLDRDKESFEKAKT 127 (413)
Q Consensus 93 TlG~GGHS~aILe~~p~--------g~Via~DrD~~Al~~Ak~ 127 (413)
-+|.|||+..++...+. -..+.-+-|+.....+++
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~ 46 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQ 46 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHH
Confidence 47999999999876422 255666777766665543
No 361
>PRK06182 short chain dehydrogenase; Validated
Probab=50.13 E-value=1e+02 Score=29.14 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=46.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|=|+||=-.++.+.+ .+.+|++++++++.++.... .++.++..+..+.+.+ +++.--..+.+|.++.+.
T Consensus 8 ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 8 VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4556666666666655 34699999999987654321 1466777777775433 322100113689999998
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|+..
T Consensus 83 g~~~ 86 (273)
T PRK06182 83 GYGS 86 (273)
T ss_pred CcCC
Confidence 8753
No 362
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.84 E-value=13 Score=37.19 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=45.1
Q ss_pred ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh
Q psy7191 68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL 128 (413)
Q Consensus 68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l 128 (413)
-+|-+|.|.|.-+. ..+=..++|.-||+|=--.+|=... .++-|+|++..+++.|.++
T Consensus 109 ~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 109 SVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred ccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhc
Confidence 57999999999986 5556789999999994444443332 4789999999999998653
No 363
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=49.43 E-value=15 Score=34.00 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEEccchhhHHH
Q psy7191 310 LNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIV 343 (413)
Q Consensus 310 L~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiV 343 (413)
+..+...++.+..+|+|||++++...=.-++++.
T Consensus 118 ~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~ 151 (181)
T TIGR00138 118 LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIE 151 (181)
T ss_pred hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHH
Confidence 3455667788899999999999874333334333
No 364
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=49.10 E-value=5.8 Score=37.90 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccCCeEEE--EEccc
Q psy7191 303 RRFVNNELNELNYAMIIAEKYLKPEGLLLT--KCNSI 337 (413)
Q Consensus 303 RI~VN~EL~~L~~~L~~a~~~L~pgGrl~V--ISFHS 337 (413)
+|||+.= ..++..|+.+...|+|||||++ ||-++
T Consensus 105 aiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred EEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 4778888 8899999999999999999873 44443
No 365
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=48.87 E-value=1.4e+02 Score=31.60 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=53.3
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL 163 (413)
+..++ .|-|.||=-.++.+.+ .+.+|+++|++++.++.... .....+..+..+.++.+.+.+.. +.+|.++
T Consensus 178 gK~VL-ITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~--~~~~~v~~v~~Dvsd~~~v~~~l----~~IDiLI 250 (406)
T PRK07424 178 GKTVA-VTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEIN--GEDLPVKTLHWQVGQEAALAELL----EKVDILI 250 (406)
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--hcCCCeEEEEeeCCCHHHHHHHh----CCCCEEE
Confidence 45555 7888888888888876 35799999999876643211 11124667777888776655443 2599999
Q ss_pred EcCCCC
Q psy7191 164 MDVGIS 169 (413)
Q Consensus 164 fDLGvS 169 (413)
.+.|+.
T Consensus 251 nnAGi~ 256 (406)
T PRK07424 251 INHGIN 256 (406)
T ss_pred ECCCcC
Confidence 999974
No 366
>PRK04266 fibrillarin; Provisional
Probab=48.74 E-value=20 Score=34.61 Aligned_cols=19 Identities=42% Similarity=0.445 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcccCCeEEE
Q psy7191 314 NYAMIIAEKYLKPEGLLLT 332 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~V 332 (413)
..+|..+..+|+|||+++|
T Consensus 156 ~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 4568889999999999999
No 367
>PRK07074 short chain dehydrogenase; Provisional
Probab=48.58 E-value=1e+02 Score=28.74 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=48.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHH---HhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL---KNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L---~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.++...+ .+.+|+++|+++...+...+.+. ..++.++..+..+...+. .+..-..+++|+++...
T Consensus 7 ItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 85 (257)
T PRK07074 7 VTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAAAERGPVDVLVANA 85 (257)
T ss_pred EECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3555565566666554 34689999999887665433222 136888888888766442 22100113589999988
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|.+
T Consensus 86 g~~ 88 (257)
T PRK07074 86 GAA 88 (257)
T ss_pred CCC
Confidence 874
No 368
>PRK07060 short chain dehydrogenase; Provisional
Probab=48.49 E-value=1.4e+02 Score=27.27 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=43.7
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=..++++.+ ...+|+.++++++.++...+.. .+.++..++.+... .++.. +.+|.++...
T Consensus 14 ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~----~~~d~vi~~a 85 (245)
T PRK07060 14 VTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET----GCEPLRLDVGDDAAIRAALAAA----GAFDGLVNCA 85 (245)
T ss_pred EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCeEEEecCCCHHHHHHHHHHh----CCCCEEEECC
Confidence 3544555555555544 3468999999987665432211 34567777777543 33332 3689999999
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|++.
T Consensus 86 g~~~ 89 (245)
T PRK07060 86 GIAS 89 (245)
T ss_pred CCCC
Confidence 8854
No 369
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.79 E-value=1.1e+02 Score=28.76 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCEEEEEecCC--chhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCC
Q psy7191 86 DVTMIDMTYGD--GNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNS 158 (413)
Q Consensus 86 ~~i~VDaTlG~--GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~ 158 (413)
++++| .|-|. +|=-.++.+.+ .+.+|+..+++....+..++... .++.++..+..+.+ +++++..-..++
T Consensus 7 ~k~~l-ItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 7 GKKIV-VMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred CCEEE-EeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 34444 45454 46667777766 35799999998544333333221 36778888887643 333322101246
Q ss_pred ccEEEEcCCCCc
Q psy7191 159 IDGIIMDVGISD 170 (413)
Q Consensus 159 VDGILfDLGvSS 170 (413)
+|.++.+.|+..
T Consensus 84 iD~lv~nAg~~~ 95 (252)
T PRK06079 84 IDGIVHAIAYAK 95 (252)
T ss_pred CCEEEEcccccc
Confidence 999999999853
No 370
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=47.62 E-value=1e+02 Score=30.18 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=49.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|+||=-.++...+ .+.+|+.++++++..+.+.+.+... .++.++..+..+.+.+ +++..-....+|.++-+
T Consensus 11 VTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~li~n 90 (322)
T PRK07453 11 ITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPLDALVCN 90 (322)
T ss_pred EEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEEC
Confidence 4666666555555554 2468999999988766554433222 2788888888876543 33211011359999999
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
-|+.
T Consensus 91 Ag~~ 94 (322)
T PRK07453 91 AAVY 94 (322)
T ss_pred Cccc
Confidence 9974
No 371
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=47.59 E-value=35 Score=32.67 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 307 NNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 307 N~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
++.++.++.++..+..+|+|||++++-.=++-. .-+++.|++
T Consensus 211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~-~~~~~~l~~ 252 (275)
T PRK09328 211 EDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQG-EAVRALLAA 252 (275)
T ss_pred CCHHHHHHHHHHHHHHhcccCCEEEEEECchHH-HHHHHHHHh
Confidence 567888899999999999999999875422322 346666664
No 372
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=47.56 E-value=21 Score=33.99 Aligned_cols=27 Identities=11% Similarity=-0.132 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccc
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSI 337 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHS 337 (413)
+..+..+....++|+|||+++++||.-
T Consensus 129 ~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 129 EMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 345668889999999999999999964
No 373
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.43 E-value=90 Score=30.03 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=45.8
Q ss_pred EEEecCCc--hhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEE
Q psy7191 90 IDMTYGDG--NHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGI 162 (413)
Q Consensus 90 VDaTlG~G--GHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGI 162 (413)
+=.|-|++ |=-.++.+.+ .+.+|+..|++....+.+++.....+.+.++..+.++.+ .++.+..-..+.+|.+
T Consensus 9 ~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~l 88 (262)
T PRK07984 9 ILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPKFDGF 88 (262)
T ss_pred EEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCCCCEE
Confidence 33455543 5555566555 346888889885333334333322345667778887744 3333321112469999
Q ss_pred EEcCCCC
Q psy7191 163 IMDVGIS 169 (413)
Q Consensus 163 LfDLGvS 169 (413)
+.+.|+.
T Consensus 89 innAg~~ 95 (262)
T PRK07984 89 VHSIGFA 95 (262)
T ss_pred EECCccC
Confidence 9999973
No 374
>KOG1270|consensus
Probab=47.32 E-value=34 Score=34.72 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.0
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll 129 (413)
|.-++|.-||+|==|..+... ...|.|+|..+++++.|++..
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~ 131 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHK 131 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhh
Confidence 566999999999666665543 368999999999999998863
No 375
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=47.19 E-value=15 Score=31.40 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcccCCeEEEEEccc
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNSI 337 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFHS 337 (413)
...+|..+.++|+|||++++.+...
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 6688999999999999988877653
No 376
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=46.60 E-value=40 Score=33.04 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=40.5
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCCCeEEEecCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDPRLVPVYGKFSD 144 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~rv~~i~~nFs~ 144 (413)
.+++-|...|.|=- ..+..+. .-+|||+.+||..-..|+++++ .+.++.++.++-+.
T Consensus 33 ~d~~~DLGaGsGiL-s~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~ 91 (252)
T COG4076 33 EDTFADLGAGSGIL-SVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD 91 (252)
T ss_pred hhceeeccCCcchH-HHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc
Confidence 37889988888832 2333333 3589999999999999998864 34477777776443
No 377
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=46.56 E-value=58 Score=24.90 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.0
Q ss_pred EEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhh
Q psy7191 89 MIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTL 128 (413)
Q Consensus 89 ~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~l 128 (413)
++|..+|.|..+ .+....+. ..++|+|..+.++..++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARAR 91 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhh
Confidence 999999999766 33333344 4899999999999885443
No 378
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=46.34 E-value=88 Score=29.44 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=48.9
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||--.++.+.+ .+.+|+.+|++.+.++...+.. ..++..+..+..+... .+++..-..+.+|.++.+.
T Consensus 10 ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 87 (262)
T TIGR03325 10 VTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNA 87 (262)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 4677777777777776 3579999999987665433211 1267888888877443 2322100113689999998
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 88 g~~ 90 (262)
T TIGR03325 88 GIW 90 (262)
T ss_pred CCC
Confidence 873
No 379
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=45.82 E-value=22 Score=31.36 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=26.1
Q ss_pred HHHhhhHHHHHHHHHHHHhhcccCCeEEEE
Q psy7191 304 RFVNNELNELNYAMIIAEKYLKPEGLLLTK 333 (413)
Q Consensus 304 I~VN~EL~~L~~~L~~a~~~L~pgGrl~VI 333 (413)
|-.|.=-+-|..++..+.+.|+|||++++=
T Consensus 14 IHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 14 IHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 556777789999999999999999999863
No 380
>PRK07035 short chain dehydrogenase; Provisional
Probab=45.78 E-value=97 Score=28.77 Aligned_cols=76 Identities=9% Similarity=0.141 Sum_probs=46.6
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
|=|+||=-.++...+ .+.+|+++|+++..++...+.+... .++.++..+..+...+ +++..-..+.+|.++...
T Consensus 14 tGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~a 93 (252)
T PRK07035 14 TGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLDILVNNA 93 (252)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 555555555555554 2469999999988877655444333 3677788777765432 332110113589999888
Q ss_pred CC
Q psy7191 167 GI 168 (413)
Q Consensus 167 Gv 168 (413)
|+
T Consensus 94 g~ 95 (252)
T PRK07035 94 AA 95 (252)
T ss_pred Cc
Confidence 75
No 381
>KOG1271|consensus
Probab=45.75 E-value=40 Score=32.85 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=37.6
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecC
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGK 141 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~n 141 (413)
..++|.-+|+|---..+++.-=.+.|.|+|-.+.|++.|+.+.+. ++ .++|-+.+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D 126 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD 126 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence 489999999994334444432236799999999999999876543 33 35554444
No 382
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=45.71 E-value=24 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
....+|..+..+|+|||+++|..+.
T Consensus 134 d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 134 DKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5678899999999999999998764
No 383
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=45.34 E-value=35 Score=31.51 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 314 NYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
+.+|..+..+|+|||++.+.|.+--=-.-+...|..
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 667899999999999999999775433333444443
No 384
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=45.16 E-value=40 Score=30.45 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcccCCeEEEEEccchhhHHHHH
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKR 345 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~ 345 (413)
+...|..|..+|+|||.+++-.|++-+..-+..
T Consensus 118 ~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~ 150 (181)
T PF01728_consen 118 ILSQLLLALELLKPGGTFVIKVFKGPEIEELIY 150 (181)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHH
T ss_pred HHHHHHHHHhhhcCCCEEEEEeccCccHHHHHH
Confidence 344567788999999999999999765444433
No 385
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=45.03 E-value=41 Score=33.31 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
.+..++..+..+|+|||++++..+..-+-..|+..+++
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~ 274 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQ 274 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHc
Confidence 45677889999999999998877654444456666654
No 386
>PRK08862 short chain dehydrogenase; Provisional
Probab=45.00 E-value=92 Score=29.26 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=48.4
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCCh---HHHHHhcCCCCC-CccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDL---PNILKNMNNNFN-SIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l---~~~L~~~~~~~~-~VDGILf 164 (413)
.|-|++|=-.++...+ .+.+|+.++++++.++.+.+.++..+ ++..+..+..+. ..++++..-..+ .+|.++.
T Consensus 10 VtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~iD~li~ 89 (227)
T PRK08862 10 ITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRAPDVLVN 89 (227)
T ss_pred EECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 5666666667777766 45799999999999887654443323 566665555443 333433211113 6999998
Q ss_pred cCCC
Q psy7191 165 DVGI 168 (413)
Q Consensus 165 DLGv 168 (413)
+-|+
T Consensus 90 nag~ 93 (227)
T PRK08862 90 NWTS 93 (227)
T ss_pred CCcc
Confidence 8875
No 387
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=44.85 E-value=35 Score=35.03 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEEccch-hhHHHHHHHhh
Q psy7191 310 LNELNYAMIIAEKYLKPEGLLLTKCNSIV-EDKIVKRHLTG 349 (413)
Q Consensus 310 L~~L~~~L~~a~~~L~pgGrl~VISFHSL-EDRiVK~~f~~ 349 (413)
....+.++..+.++|+|||+|.|+.-.-| -..++++.|..
T Consensus 279 ~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~ 319 (342)
T PRK09489 279 LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS 319 (342)
T ss_pred HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC
Confidence 45678899999999999999988775444 12466677765
No 388
>PRK06484 short chain dehydrogenase; Validated
Probab=44.48 E-value=1.3e+02 Score=31.57 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=53.9
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCcc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSID 160 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VD 160 (413)
+++++ .|=|.||=-.++.+.+ .+.+|+.+|++++.++...+.+. .++..+..+..+.+. ++++..-..+.+|
T Consensus 269 ~k~~l-ItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 345 (520)
T PRK06484 269 PRVVA-ITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQARWGRLD 345 (520)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 45544 7888888777777776 34699999999988876554331 256667778776543 3333211124699
Q ss_pred EEEEcCCCC
Q psy7191 161 GIIMDVGIS 169 (413)
Q Consensus 161 GILfDLGvS 169 (413)
+++.+-|+.
T Consensus 346 ~li~nAg~~ 354 (520)
T PRK06484 346 VLVNNAGIA 354 (520)
T ss_pred EEEECCCCc
Confidence 999999874
No 389
>PRK07791 short chain dehydrogenase; Provisional
Probab=44.28 E-value=90 Score=30.25 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=48.6
Q ss_pred EEecCCchhHHHHHHhc--CCCEEEEEeCCH---------HHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCC
Q psy7191 91 DMTYGDGNHTRLILENI--GNVKVICLDRDK---------ESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNN 155 (413)
Q Consensus 91 DaTlG~GGHS~aILe~~--p~g~Via~DrD~---------~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~ 155 (413)
=.|-|+||=-.+|.+.+ ...+|+.+|++. +.++.+.+.+.... ++.++..+..+.+. ++++..-.
T Consensus 10 lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (286)
T PRK07791 10 IVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAAVET 89 (286)
T ss_pred EEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 35667777777777766 356898888865 55544333332223 67788888877443 33321101
Q ss_pred CCCccEEEEcCCCC
Q psy7191 156 FNSIDGIIMDVGIS 169 (413)
Q Consensus 156 ~~~VDGILfDLGvS 169 (413)
.+.+|+++.+.|+.
T Consensus 90 ~g~id~lv~nAG~~ 103 (286)
T PRK07791 90 FGGLDVLVNNAGIL 103 (286)
T ss_pred cCCCCEEEECCCCC
Confidence 24699999988873
No 390
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=44.05 E-value=33 Score=36.19 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHhhcccCCeEEEEE--ccchh-hHHHHHHHhhc
Q psy7191 315 YAMIIAEKYLKPEGLLLTKC--NSIVE-DKIVKRHLTGN 350 (413)
Q Consensus 315 ~~L~~a~~~L~pgGrl~VIS--FHSLE-DRiVK~~f~~~ 350 (413)
..|..+..+|+|||+|+.-| ++.-| ...|..|++..
T Consensus 358 ~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 47889999999999998654 55567 44667777653
No 391
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=44.03 E-value=26 Score=34.60 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
+.....|..+.+.|+||||++|+-+.
T Consensus 231 ~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 231 QLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 34567799999999999999999874
No 392
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=43.81 E-value=49 Score=35.65 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=60.9
Q ss_pred cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc---C-CCEEEEEeCCHHHHHHHHhh--hcCCC-CeEEEecC
Q psy7191 69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI---G-NVKVICLDRDKESFEKAKTL--AANDP-RLVPVYGK 141 (413)
Q Consensus 69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~---p-~g~Via~DrD~~Al~~Ak~l--l~~~~-rv~~i~~n 141 (413)
.|.=+.+++-.+..+++...+.|-|||.||--....+.+ . ++.+||.++++.....++-. +.... .+.+.+++
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 355555555555446788899999999998654444443 2 37899999999998887653 33322 12222221
Q ss_pred -CCChHHHHHhcCCCCCCccEEEEcCCCCccCc
Q psy7191 142 -FSDLPNILKNMNNNFNSIDGIIMDVGISDSQA 173 (413)
Q Consensus 142 -Fs~l~~~L~~~~~~~~~VDGILfDLGvSS~Ql 173 (413)
+++... .. +...+.+|.|+.+-.+|..-.
T Consensus 250 tl~~~~~-~~--~~~~~~~D~viaNPPf~~~~~ 279 (489)
T COG0286 250 TLSNPKH-DD--KDDKGKFDFVIANPPFSGKGW 279 (489)
T ss_pred cccCCcc-cc--cCCccceeEEEeCCCCCcccc
Confidence 222110 00 112346899998888873333
No 393
>KOG3339|consensus
Probab=43.69 E-value=25 Score=33.96 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=27.6
Q ss_pred EecCCchhHHHHHHhc---C----CCEEEEEeCCHHHHHHHHh
Q psy7191 92 MTYGDGNHTRLILENI---G----NVKVICLDRDKESFEKAKT 127 (413)
Q Consensus 92 aTlG~GGHS~aILe~~---p----~g~Via~DrD~~Al~~Ak~ 127 (413)
.-+|.||||..+|+.+ . .-+.++-|-|....+++..
T Consensus 43 VvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~ 85 (211)
T KOG3339|consen 43 VVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARS 85 (211)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhcCceEEEEecCchhhHHHHHh
Confidence 3589999999998754 1 2366788999888887765
No 394
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=43.33 E-value=1.4e+02 Score=33.33 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhc-CC--CCeEEEecCCCChHHH---HHhcCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAA-ND--PRLVPVYGKFSDLPNI---LKNMNNNFN 157 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~-~~--~rv~~i~~nFs~l~~~---L~~~~~~~~ 157 (413)
+++++ .|-|+||=-.++...+ .+.+|+++|++++..+...+.+. .+ .++..+..+..+.+.+ +.+..-..+
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g 492 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG 492 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 44544 7777888777777776 34799999999988766543332 12 2677788888775543 332111123
Q ss_pred CccEEEEcCCCCc
Q psy7191 158 SIDGIIMDVGISD 170 (413)
Q Consensus 158 ~VDGILfDLGvSS 170 (413)
.+|.++.+.|++.
T Consensus 493 ~iDilV~nAG~~~ 505 (676)
T TIGR02632 493 GVDIVVNNAGIAT 505 (676)
T ss_pred CCcEEEECCCCCC
Confidence 6999999998753
No 395
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=43.27 E-value=1.1e+02 Score=28.14 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=46.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHH---HhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNIL---KNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L---~~~~~~~~~VDGILfD 165 (413)
.|-|+||=-.++.+.+ .+.+|+++++++. ..+.+.++.. .++.++..+..+.+.+. ++..-..+.+|+++..
T Consensus 10 ItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ 87 (248)
T TIGR01832 10 VTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDILVNN 87 (248)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4556666666666665 3468999999763 2222222222 37888899988765542 2210011369999999
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
-|+.
T Consensus 88 ag~~ 91 (248)
T TIGR01832 88 AGII 91 (248)
T ss_pred CCCC
Confidence 8874
No 396
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=43.24 E-value=26 Score=34.45 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchhh
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVED 340 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLED 340 (413)
+.+...|..+.++|+|||+++++.+.+-+|
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~ 229 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTED 229 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 467788999999999999999988877665
No 397
>PRK06180 short chain dehydrogenase; Provisional
Probab=43.23 E-value=1.1e+02 Score=29.07 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=48.7
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|=|.||=-.++.+.+ .+.+|++++++++.++...... ..++..+..+..+.+.+ ++...-..+.+|+++...
T Consensus 9 VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~a 86 (277)
T PRK06180 9 ITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNA 86 (277)
T ss_pred EecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 5666677667777665 3569999999998765433321 13688888888775543 222100113589999988
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 87 g~~ 89 (277)
T PRK06180 87 GYG 89 (277)
T ss_pred Ccc
Confidence 874
No 398
>KOG2078|consensus
Probab=43.17 E-value=27 Score=37.68 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=54.6
Q ss_pred hhccCCccccch--HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC---CC-Ce
Q psy7191 62 EDIYNKKYPRTF--QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN---DP-RL 135 (413)
Q Consensus 62 ~n~y~~H~pvll--~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~---~~-rv 135 (413)
+-+||+ |+|. .|-+.++ .++|.++.|+.+|-|=-+.-...+ +++|+|.|.-|++++.-+..++. .+ ++
T Consensus 228 skVYWn--sRL~~Eherlsg~--fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~i 301 (495)
T KOG2078|consen 228 SKVYWN--SRLSHEHERLSGL--FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAI 301 (495)
T ss_pred ceEEee--ccchhHHHHHhhc--cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhhe
Confidence 457888 6665 4566666 489999999999999665554443 59999999999999998776542 23 57
Q ss_pred EEEecC
Q psy7191 136 VPVYGK 141 (413)
Q Consensus 136 ~~i~~n 141 (413)
.+++.+
T Consensus 302 ei~Nmd 307 (495)
T KOG2078|consen 302 EIFNMD 307 (495)
T ss_pred eeeccc
Confidence 776554
No 399
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=43.14 E-value=1.3e+02 Score=28.00 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=47.5
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|.||=-.+|.+.+ .+.+|+.+|++++.++...+.+. .++.++..+..+.+.+ ++...-..+.+|+++...
T Consensus 11 ItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~a 88 (257)
T PRK07067 11 LTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNNA 88 (257)
T ss_pred EeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3445555556666554 24689999999988776544332 3688888888775543 222100113689999887
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|+.
T Consensus 89 g~~ 91 (257)
T PRK07067 89 ALF 91 (257)
T ss_pred CcC
Confidence 764
No 400
>PRK06057 short chain dehydrogenase; Provisional
Probab=43.05 E-value=1e+02 Score=28.76 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCcc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSID 160 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VD 160 (413)
++.++ .|=|+||=-.++.+.+ .+.+|+++|+++...+...+.+. ..++..+..+.+ ..+++..-..+.+|
T Consensus 7 ~~~vl-ItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~~~~~~id 81 (255)
T PRK06057 7 GRVAV-ITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAAETYGSVD 81 (255)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 34443 4666677777777665 34689999999876655433321 134555555543 33433210113689
Q ss_pred EEEEcCCCC
Q psy7191 161 GIIMDVGIS 169 (413)
Q Consensus 161 GILfDLGvS 169 (413)
+++..-|+.
T Consensus 82 ~vi~~ag~~ 90 (255)
T PRK06057 82 IAFNNAGIS 90 (255)
T ss_pred EEEECCCcC
Confidence 999888874
No 401
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=42.77 E-value=1.1e+02 Score=28.70 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=45.2
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|=|+||=-.+|.+.+ .+.+|+.++++. ..+.+.+.+... .++.++..+..+.+.+ +++.--..+.+|+++..
T Consensus 20 ItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ 98 (258)
T PRK06935 20 VTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKIDILVNN 98 (258)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4555555566666655 356899999883 333333333222 3788888888875543 33210011368999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 99 ag~~ 102 (258)
T PRK06935 99 AGTI 102 (258)
T ss_pred CCCC
Confidence 8874
No 402
>PRK07832 short chain dehydrogenase; Provisional
Probab=42.76 E-value=1.7e+02 Score=27.67 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=43.7
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC-CC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN-DP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~-~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD 165 (413)
|=|+||=-.++.+.+ .+..|+.++++++.++...+.+.. .. .+.++..+.++... ++.+..-..+.+|+++..
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 85 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNI 85 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 444444445554443 356899999999877665433222 12 34445677766443 222211012368999988
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
.|+..
T Consensus 86 ag~~~ 90 (272)
T PRK07832 86 AGISA 90 (272)
T ss_pred CCCCC
Confidence 88743
No 403
>PRK12743 oxidoreductase; Provisional
Probab=42.72 E-value=1.7e+02 Score=27.35 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=46.6
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEe-CCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLD-RDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~D-rD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
|=|+||=-.++.+.+ ...+|+.++ ++....+.+.+.+...+ ++.++..+.++...+ +.+..-..+.+|+++..
T Consensus 8 tGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ 87 (256)
T PRK12743 8 TASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNN 87 (256)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 445666666666665 345787764 56666655444333334 788999998885432 32211012369999998
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
-|+.
T Consensus 88 ag~~ 91 (256)
T PRK12743 88 AGAM 91 (256)
T ss_pred CCCC
Confidence 8874
No 404
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=42.65 E-value=37 Score=35.50 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcccCCeEEEE--EccchhhH-HHHHHHhh
Q psy7191 314 NYAMIIAEKYLKPEGLLLTK--CNSIVEDK-IVKRHLTG 349 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VI--SFHSLEDR-iVK~~f~~ 349 (413)
..+|..|..+|+|||+|++. |++.-|.. +|..|+.+
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 45788899999999999976 44444644 55666654
No 405
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=42.54 E-value=30 Score=33.41 Aligned_cols=39 Identities=21% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
+.+...+..+..+|+|||++++-.+-.-+...|...+++
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~ 228 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEE 228 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHH
Confidence 446677889999999999998765433333345555554
No 406
>PRK05855 short chain dehydrogenase; Validated
Probab=42.27 E-value=1.1e+02 Score=32.08 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=54.5
Q ss_pred CEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCcc
Q psy7191 87 VTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSID 160 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VD 160 (413)
.+++ .|-|.||=-.++.+.+ .+.+|+.+|+++..++...+.+... .++.++..+.++.+.+ +++..-..+.+|
T Consensus 316 ~~~l-v~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 394 (582)
T PRK05855 316 KLVV-VTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVPD 394 (582)
T ss_pred CEEE-EECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3444 5777787777777776 3468999999998877654443332 3788888888875543 332111123699
Q ss_pred EEEEcCCCC
Q psy7191 161 GIIMDVGIS 169 (413)
Q Consensus 161 GILfDLGvS 169 (413)
+++.+-|+.
T Consensus 395 ~lv~~Ag~~ 403 (582)
T PRK05855 395 IVVNNAGIG 403 (582)
T ss_pred EEEECCccC
Confidence 999999984
No 407
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=42.26 E-value=39 Score=31.97 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHH
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHL 347 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f 347 (413)
....+|..+...|+|||++++......+|......+
T Consensus 139 ~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~ 174 (239)
T TIGR00740 139 DRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL 174 (239)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHH
Confidence 355789999999999999998876666665544433
No 408
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=42.22 E-value=21 Score=34.28 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHh
Q psy7191 314 NYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLT 348 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~ 348 (413)
..+|..+..+|+|||+++|+. ++....+.+..+.
T Consensus 129 ~~~l~~~~~~LkpgG~l~i~~-~n~~~~~~~~~~~ 162 (255)
T PRK11036 129 KSVLQTLWSVLRPGGALSLMF-YNANGLLMHNMVA 162 (255)
T ss_pred HHHHHHHHHHcCCCeEEEEEE-ECccHHHHHHHHc
Confidence 467888999999999998764 3333434444433
No 409
>KOG3115|consensus
Probab=42.18 E-value=24 Score=34.81 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=38.7
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll 129 (413)
--++|.-||.||-...+-..+|+.-++|+.+--..-++.++++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI 104 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERI 104 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHH
Confidence 4689999999999999998899989999999999998888765
No 410
>PRK06841 short chain dehydrogenase; Provisional
Probab=42.00 E-value=1.4e+02 Score=27.64 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=44.9
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|=|.||=-.++.+.+ .+.+|+++++++...+.+.+.. ..++.++..+..+...+ +.+..-...++|+++..-
T Consensus 20 ItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a 97 (255)
T PRK06841 20 VTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDILVNSA 97 (255)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3444444444444444 3468999999987654443332 12566788888776543 322110113689999999
Q ss_pred CCC
Q psy7191 167 GIS 169 (413)
Q Consensus 167 GvS 169 (413)
|++
T Consensus 98 g~~ 100 (255)
T PRK06841 98 GVA 100 (255)
T ss_pred CCC
Confidence 874
No 411
>PLN02244 tocopherol O-methyltransferase
Probab=42.00 E-value=25 Score=35.69 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcccCCeEEEEEcc
Q psy7191 314 NYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VISFH 336 (413)
..+|..+..+|+|||+++|.++.
T Consensus 203 ~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 203 RKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred HHHHHHHHHHcCCCcEEEEEEec
Confidence 46788889999999999998863
No 412
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=41.48 E-value=17 Score=31.86 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=32.4
Q ss_pred HHhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHH
Q psy7191 201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNE 248 (413)
Q Consensus 201 vlN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~ 248 (413)
-||+.+.++|..| .-.| ...|++|+++|....+|.+..||.+
T Consensus 61 niNtA~~~eL~~l-pGIG-----~~~A~~Ii~~R~~~g~f~s~eeL~~ 102 (120)
T TIGR01259 61 NINAASLEELQAL-PGIG-----PAKAKAIIEYREENGAFKSVDDLTK 102 (120)
T ss_pred eCCcCCHHHHhcC-CCCC-----HHHHHHHHHHHHhcCCcCCHHHHHc
Confidence 3788999998764 2333 4678999999977789999998854
No 413
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=41.46 E-value=56 Score=30.59 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191 307 NNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 307 N~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~ 349 (413)
.+.+..+..++..+..+|+|||++++-.-.+-+ .-+.++|++
T Consensus 190 ~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~-~~~~~~l~~ 231 (251)
T TIGR03534 190 EDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQG-EAVRALFEA 231 (251)
T ss_pred CcHHHHHHHHHHHHHHhcccCCEEEEEECccHH-HHHHHHHHh
Confidence 567788889999999999999998875422222 235555654
No 414
>KOG2671|consensus
Probab=41.46 E-value=18 Score=38.12 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=29.7
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHH
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFE 123 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~ 123 (413)
.+||+++.|==.|+|| .|+... =++.|+|-|+|-..+.
T Consensus 206 v~pGdivyDPFVGTGs---lLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGS---LLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred cCCCCEEecCccccCc---eeeehhhhcceeeccccchheee
Confidence 6899999999999996 233332 2579999999987765
No 415
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=41.34 E-value=2.3e+02 Score=25.82 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhh---cC-CCCeEEEecCCCChHHH---HHhcCCCCCCccEEE
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLA---AN-DPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGII 163 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll---~~-~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGIL 163 (413)
|-|.||=...+.+.+ .+.+|+++|+++. +.+++.. .. ..++.++..++.+...+ +....-..+.+|+++
T Consensus 8 tG~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi 85 (245)
T PRK12824 8 TGAKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVDILV 85 (245)
T ss_pred eCCCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 334444444444444 2468999999964 2222211 11 13788999998875543 322100123599999
Q ss_pred EcCCCC
Q psy7191 164 MDVGIS 169 (413)
Q Consensus 164 fDLGvS 169 (413)
...|+.
T Consensus 86 ~~ag~~ 91 (245)
T PRK12824 86 NNAGIT 91 (245)
T ss_pred ECCCCC
Confidence 888874
No 416
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=41.07 E-value=1.5e+02 Score=29.32 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=48.5
Q ss_pred EecCCchhHHHHHHhc--CC-CEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GN-VKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~-g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILf 164 (413)
.|-|++|=-.++.+.+ .+ .+|+.++++++..+.+.+.+.... ++.++..+.++.+. .+.+..-..+.+|.++.
T Consensus 8 ITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~lI~ 87 (314)
T TIGR01289 8 ITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVC 87 (314)
T ss_pred EECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4556666656666554 24 689999999887766544343222 67778888876553 33332101236999999
Q ss_pred cCCC
Q psy7191 165 DVGI 168 (413)
Q Consensus 165 DLGv 168 (413)
+.|+
T Consensus 88 nAG~ 91 (314)
T TIGR01289 88 NAAV 91 (314)
T ss_pred CCCc
Confidence 9997
No 417
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=41.02 E-value=40 Score=30.97 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcccCCeEEEEEccchhhHH
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKCNSIVEDKI 342 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VISFHSLEDRi 342 (413)
.+...|..+..+|+|||+++++.+..-+...
T Consensus 136 ~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~ 166 (239)
T PRK00216 136 DIDKALREMYRVLKPGGRLVILEFSKPTNPP 166 (239)
T ss_pred CHHHHHHHHHHhccCCcEEEEEEecCCCchH
Confidence 3567788999999999999999886655443
No 418
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=40.84 E-value=27 Score=33.17 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhcccCCeEEEEEccc
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNSI 337 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFHS 337 (413)
+..+|..+..+|+|||++++.+|..
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 5678889999999999999998764
No 419
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=40.79 E-value=36 Score=35.79 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcccCCeEEEE--Eccchh-hHHHHHHHhhc
Q psy7191 314 NYAMIIAEKYLKPEGLLLTK--CNSIVE-DKIVKRHLTGN 350 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VI--SFHSLE-DRiVK~~f~~~ 350 (413)
...|..+..+|+|||+|+.. |+|.-| ...|..|+++.
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 56788999999999999866 466656 34677777763
No 420
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=40.78 E-value=78 Score=31.12 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHH
Q psy7191 45 EEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFE 123 (413)
Q Consensus 45 ~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~ 123 (413)
+|+|..+.||+--..=+. -|+--|| +.+|+.|....++-++.|.-||.+.=+ +..++ -+|+.||.-+.
T Consensus 36 ~dP~~F~~YH~Gfr~Qv~--~WP~nPv--d~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~--- 104 (219)
T PF05148_consen 36 EDPELFDIYHEGFRQQVK--KWPVNPV--DVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP--- 104 (219)
T ss_dssp H-HHHHHHHHHHHHHHHC--TSSS-HH--HHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---
T ss_pred hCHHHHHHHHHHHHHHHh--cCCCCcH--HHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC---
Confidence 367777888877766555 4666776 899999973333458889888887444 44454 47999997631
Q ss_pred HHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191 124 KAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 124 ~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDL 166 (413)
.++|+ .++-++++ | +.+.||.++|=|
T Consensus 105 --------n~~Vt--acdia~vP--L-----~~~svDv~VfcL 130 (219)
T PF05148_consen 105 --------NPRVT--ACDIANVP--L-----EDESVDVAVFCL 130 (219)
T ss_dssp --------STTEE--ES-TTS-S---------TT-EEEEEEES
T ss_pred --------CCCEE--EecCccCc--C-----CCCceeEEEEEh
Confidence 12443 34445554 2 234688888665
No 421
>PLN00015 protochlorophyllide reductase
Probab=40.58 E-value=1.7e+02 Score=28.58 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=47.7
Q ss_pred ecCCchhHHHHHHhc--CC-CEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GN-VKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~-g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD 165 (413)
|-|.+|=-.++.+.+ .+ .+|+..+++++..+.+...+... .++.++..+.++.+. ++++..-..+.+|.++.+
T Consensus 3 TGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lInn 82 (308)
T PLN00015 3 TGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCN 82 (308)
T ss_pred eCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 445555555555554 23 58999999988776554433322 267778888877554 333221112469999999
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
-|+..
T Consensus 83 AG~~~ 87 (308)
T PLN00015 83 AAVYL 87 (308)
T ss_pred CCcCC
Confidence 99743
No 422
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=40.09 E-value=18 Score=30.28 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=13.6
Q ss_pred HHHHHHhhcccCCeEEEEEccc
Q psy7191 316 AMIIAEKYLKPEGLLLTKCNSI 337 (413)
Q Consensus 316 ~L~~a~~~L~pgGrl~VISFHS 337 (413)
.++.+.++|+|||+++++.+++
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 4555556666666666666665
No 423
>PRK06484 short chain dehydrogenase; Validated
Probab=40.03 E-value=1.7e+02 Score=30.77 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=53.3
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCcc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSID 160 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VD 160 (413)
+++++ .|-|++|=-.++.+.+ ...+|+.+|++++.++...+.+ ..++.++..+.++.+. +++...-..+.+|
T Consensus 5 ~k~~l-ITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 5 SRVVL-VTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL--GPDHHALAMDVSDEAQIREGFEQLHREFGRID 81 (520)
T ss_pred CeEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 44444 6777888778888776 3469999999998876644332 1256677777776443 3332110123699
Q ss_pred EEEEcCCCCc
Q psy7191 161 GIIMDVGISD 170 (413)
Q Consensus 161 GILfDLGvSS 170 (413)
.++.+.|++.
T Consensus 82 ~li~nag~~~ 91 (520)
T PRK06484 82 VLVNNAGVTD 91 (520)
T ss_pred EEEECCCcCC
Confidence 9999999843
No 424
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.92 E-value=99 Score=33.45 Aligned_cols=66 Identities=11% Similarity=0.269 Sum_probs=48.3
Q ss_pred cCCchhHHHHHHhcC--CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 94 YGDGNHTRLILENIG--NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 94 lG~GGHS~aILe~~p--~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
+|.|-=.+.+.+.+. +..++.+|.|++..+.+++. .+..++++-.+ ++.|++.++. ..|.++.-.+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~-~~~L~~a~i~--~a~~viv~~~ 490 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAAN-EEIMQLAHLD--CARWLLLTIP 490 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCC-HHHHHhcCcc--ccCEEEEEcC
Confidence 566666667777662 35799999999988877542 36778999888 4677777774 6898886544
No 425
>KOG1208|consensus
Probab=39.89 E-value=1.7e+02 Score=29.81 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=57.9
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-CCC--CeEEEecCCCChHHHHH---hcCCCCCCcc
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-NDP--RLVPVYGKFSDLPNILK---NMNNNFNSID 160 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-~~~--rv~~i~~nFs~l~~~L~---~~~~~~~~VD 160 (413)
-++-.+|.|-|=.|..-|.... ++||-.-||.+.-+.+++.+. ..+ ++.+++.+.+.+..+.+ +..-...++|
T Consensus 38 ~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~~ld 116 (314)
T KOG1208|consen 38 ALVTGATSGIGFETARELALRG-AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEGPLD 116 (314)
T ss_pred EEEECCCCchHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCCCcc
Confidence 3667888888877777776654 899999999877666655443 232 78889999999876532 1111234699
Q ss_pred EEEEcCCC
Q psy7191 161 GIIMDVGI 168 (413)
Q Consensus 161 GILfDLGv 168 (413)
..+.+.||
T Consensus 117 vLInNAGV 124 (314)
T KOG1208|consen 117 VLINNAGV 124 (314)
T ss_pred EEEeCccc
Confidence 99999999
No 426
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=39.66 E-value=38 Score=32.48 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHhhcc--cCCeEEEEEcc
Q psy7191 307 NNELNELNYAMIIAEKYLK--PEGLLLTKCNS 336 (413)
Q Consensus 307 N~EL~~L~~~L~~a~~~L~--pgGrl~VISFH 336 (413)
+++|+.+.++|..+.+.|. ++-|+++|||-
T Consensus 19 ~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~ 50 (239)
T cd01468 19 EGLLQALKESLLASLDLLPGDPRARVGLITYD 50 (239)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Confidence 5789999999999999998 99999999994
No 427
>PRK07856 short chain dehydrogenase; Provisional
Probab=39.57 E-value=1.4e+02 Score=27.88 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=48.0
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCcc
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSID 160 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VD 160 (413)
++++| .|-|+||=-.++.+.+ .+..|+.+|++++. . . ...++.++..+..+... .+....-..+.+|
T Consensus 6 ~k~~l-ItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----~-~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 77 (252)
T PRK07856 6 GRVVL-VTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----T-V-DGRPAEFHAADVRDPDQVAALVDAIVERHGRLD 77 (252)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----h-h-cCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 44444 6777777777777665 34689999999765 1 1 11367788888876543 3322110123689
Q ss_pred EEEEcCCCC
Q psy7191 161 GIIMDVGIS 169 (413)
Q Consensus 161 GILfDLGvS 169 (413)
+++...|+.
T Consensus 78 ~vi~~ag~~ 86 (252)
T PRK07856 78 VLVNNAGGS 86 (252)
T ss_pred EEEECCCCC
Confidence 999998874
No 428
>PRK07402 precorrin-6B methylase; Provisional
Probab=39.49 E-value=31 Score=31.66 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcccCCeEEEEEccchhhHH-HHHHHhh
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKI-VKRHLTG 349 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFHSLEDRi-VK~~f~~ 349 (413)
++.+|..+..+|+|||++++.+ .++|+.. +.+.++.
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~-~~~~~~~~~~~~~~~ 157 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATA-SSLEGLYAISEGLAQ 157 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEe-ecHHHHHHHHHHHHh
Confidence 5778899999999999988775 4666533 5666665
No 429
>PRK07775 short chain dehydrogenase; Provisional
Probab=39.46 E-value=1.6e+02 Score=28.11 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=50.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
.|-|+||=-.++.+.+ .+.+|+++++.+...+.....+... .++.++..+..+...+ ++...-..+.+|+++..
T Consensus 15 VtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 94 (274)
T PRK07775 15 VAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIEVLVSG 94 (274)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5666777777777766 2468999999887665544333222 3688888888776543 33211111368999988
Q ss_pred CCCCc
Q psy7191 166 VGISD 170 (413)
Q Consensus 166 LGvSS 170 (413)
.|+.+
T Consensus 95 Ag~~~ 99 (274)
T PRK07775 95 AGDTY 99 (274)
T ss_pred CCcCC
Confidence 88743
No 430
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=39.41 E-value=53 Score=29.84 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcccCCeEEEE--EccchhhHHHHHHHhh
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTK--CNSIVEDKIVKRHLTG 349 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VI--SFHSLEDRiVK~~f~~ 349 (413)
+...+..+.++|+|||++++. ++.+.+ -+++.+++
T Consensus 110 ~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~--~~~~~l~~ 146 (187)
T PRK08287 110 LTAIIDWSLAHLHPGGRLVLTFILLENLH--SALAHLEK 146 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEecHhhHH--HHHHHHHH
Confidence 445677889999999998653 233332 23445554
No 431
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=39.28 E-value=32 Score=31.88 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
...++..+..+|+|||++++..+.
T Consensus 83 ~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 83 KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 567899999999999999998763
No 432
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=39.19 E-value=27 Score=37.61 Aligned_cols=41 Identities=27% Similarity=0.186 Sum_probs=30.5
Q ss_pred hHHHHHH-HHHHHHhhcccCCeEE--EEEccchhhHHHHHHHhh
Q psy7191 309 ELNELNY-AMIIAEKYLKPEGLLL--TKCNSIVEDKIVKRHLTG 349 (413)
Q Consensus 309 EL~~L~~-~L~~a~~~L~pgGrl~--VISFHSLEDRiVK~~f~~ 349 (413)
++..|+. .|..|..+|+|||+|| +-||+..|+.-|=++|-+
T Consensus 216 ~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~ 259 (470)
T PRK11933 216 EIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE 259 (470)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 5666765 5678899999999997 456888998766555543
No 433
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=39.02 E-value=1.6e+02 Score=30.66 Aligned_cols=74 Identities=27% Similarity=0.261 Sum_probs=47.4
Q ss_pred CCCCCEE-EEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 83 SSDDVTM-IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 83 ~~~~~i~-VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
.+||+.+ |=+.-|-|-++.++++... ++|+|||+.++-++.|+++-+ -.++.++-++..+.+++ .+|+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----d~~i~~~~~~~~~~~~~------~~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----DHVINSSDSDALEAVKE------IADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----cEEEEcCCchhhHHhHh------hCcE
Confidence 5677655 4344455656677776665 899999999999999988643 34455554444444432 2788
Q ss_pred EEEcCC
Q psy7191 162 IIMDVG 167 (413)
Q Consensus 162 ILfDLG 167 (413)
||-=.|
T Consensus 233 ii~tv~ 238 (339)
T COG1064 233 IIDTVG 238 (339)
T ss_pred EEECCC
Confidence 874333
No 434
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=38.87 E-value=1.9e+02 Score=27.23 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=49.3
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEe-CCHHHHHHHHhhhc-CCC-CeEEEecCCCChHHH---HHhcCCCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLD-RDKESFEKAKTLAA-NDP-RLVPVYGKFSDLPNI---LKNMNNNFN 157 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~D-rD~~Al~~Ak~ll~-~~~-rv~~i~~nFs~l~~~---L~~~~~~~~ 157 (413)
+++++ .|=|+||=-.++.+.+ .+.+|+..+ ++++.++...+.++ ..+ ++.++..++++.+.+ +++..-..+
T Consensus 8 ~k~vl-ItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 86 (260)
T PRK08416 8 GKTLV-ISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD 86 (260)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 34443 5666666556666655 346777664 57766655333222 223 788899898875433 332211124
Q ss_pred CccEEEEcCCCCc
Q psy7191 158 SIDGIIMDVGISD 170 (413)
Q Consensus 158 ~VDGILfDLGvSS 170 (413)
.+|.++.+.|++.
T Consensus 87 ~id~lv~nAg~~~ 99 (260)
T PRK08416 87 RVDFFISNAIISG 99 (260)
T ss_pred CccEEEECccccc
Confidence 6999999999854
No 435
>PRK07904 short chain dehydrogenase; Provisional
Probab=38.46 E-value=1.2e+02 Score=28.85 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=47.7
Q ss_pred EecCCchhHHHHHHhc-C--CCEEEEEeCCHHH-HHHH-HhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCccEE
Q psy7191 92 MTYGDGNHTRLILENI-G--NVKVICLDRDKES-FEKA-KTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGI 162 (413)
Q Consensus 92 aTlG~GGHS~aILe~~-p--~g~Via~DrD~~A-l~~A-k~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGI 162 (413)
.|=|+||=-.++.+.+ . ..+|+.++++++. ++.+ +++.+... +++++..+..+... .+++.- ..+.+|.+
T Consensus 13 ItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~-~~g~id~l 91 (253)
T PRK07904 13 LLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF-AGGDVDVA 91 (253)
T ss_pred EEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH-hcCCCCEE
Confidence 4556666667777664 2 3599999999874 5543 33322223 78888888766443 333211 11369999
Q ss_pred EEcCCCC
Q psy7191 163 IMDVGIS 169 (413)
Q Consensus 163 LfDLGvS 169 (413)
+.+.|+.
T Consensus 92 i~~ag~~ 98 (253)
T PRK07904 92 IVAFGLL 98 (253)
T ss_pred EEeeecC
Confidence 9988873
No 436
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=38.45 E-value=40 Score=33.51 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEEccchhhH
Q psy7191 311 NELNYAMIIAEKYLKPEGLLLTKCNSIVEDK 341 (413)
Q Consensus 311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLEDR 341 (413)
.++..++..+..+|+|||++++=++-.....
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~ 173 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPP 173 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEeccccccc
Confidence 3567788999999999999997766655543
No 437
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.37 E-value=86 Score=28.65 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCCEEEEEecCCc------hhHHHHHHhc--CCCEEEEEeC
Q psy7191 85 DDVTMIDMTYGDG------NHTRLILENI--GNVKVICLDR 117 (413)
Q Consensus 85 ~~~i~VDaTlG~G------GHS~aILe~~--p~g~Via~Dr 117 (413)
+..++|||=||.| +....+++.. ....|+++|+
T Consensus 99 ~~dlIIDal~G~G~~~~l~~~~~~~i~~iN~~~~~viAiDi 139 (169)
T PF03853_consen 99 PADLIIDALFGTGFSGPLRGPIAELIDWINASRAPVIAIDI 139 (169)
T ss_dssp CESEEEEES-STTGGSCGSTCHHHHHHHHHHHCSEEEEESS
T ss_pred cccEEEEecccCCCCCCcCHHHHHHHHHHhccCCcEEEecC
Confidence 5789999999999 5566666654 2578999997
No 438
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=38.36 E-value=1.8e+02 Score=26.55 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=45.3
Q ss_pred ecCCchhHHHHHHhc--CCCEEEE-EeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GNVKVIC-LDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via-~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD 165 (413)
|=|.||=-.++.+.+ .+..|+. .+++++..+.....+.... ++.++..+..+... ++++..-..+.+|+++..
T Consensus 7 tGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id~vi~~ 86 (247)
T PRK09730 7 TGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNN 86 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 444555555555554 2457765 5777776655433333333 68888888876543 343321113469999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 87 ag~~ 90 (247)
T PRK09730 87 AGIL 90 (247)
T ss_pred CCCC
Confidence 8874
No 439
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=37.70 E-value=1.3e+02 Score=30.45 Aligned_cols=41 Identities=20% Similarity=0.074 Sum_probs=33.1
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL 128 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l 128 (413)
-.++|.-.|.||=+..+-... --.+.++|+||.|++--+.+
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n 44 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKAN 44 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHh
Confidence 378999999999999887653 23568999999999876554
No 440
>KOG4300|consensus
Probab=37.69 E-value=44 Score=33.14 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeE-EEecCCCChHHHHHhcCCCCCCccEE
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLV-PVYGKFSDLPNILKNMNNNFNSIDGI 162 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~-~i~~nFs~l~~~L~~~~~~~~~VDGI 162 (413)
.+-++...+|+|-.=+ +..-.|..+|.++|-.+.+.+.|.+..++ +.+|. ++++.-++|.++- ..++|.|
T Consensus 77 K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~------d~s~DtV 149 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA------DGSYDTV 149 (252)
T ss_pred ccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc------cCCeeeE
Confidence 3457999999995433 33333678999999999999987654432 34777 8888888876542 2479999
Q ss_pred EEcCCCCccC
Q psy7191 163 IMDVGISDSQ 172 (413)
Q Consensus 163 LfDLGvSS~Q 172 (413)
+=-|+.-|.+
T Consensus 150 V~TlvLCSve 159 (252)
T KOG4300|consen 150 VCTLVLCSVE 159 (252)
T ss_pred EEEEEEeccC
Confidence 9888887765
No 441
>PRK08703 short chain dehydrogenase; Provisional
Probab=37.66 E-value=92 Score=28.75 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=42.6
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCC-----hHHHHHhcCCCC-CCccEE
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSD-----LPNILKNMNNNF-NSIDGI 162 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~-----l~~~L~~~~~~~-~~VDGI 162 (413)
|-|+||=-.++...+ .+.+|++++++++.++...+.+.. ...+.++..++.+ +..++....-.. +.+|+|
T Consensus 12 tG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~~~~id~v 91 (239)
T PRK08703 12 TGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEATQGKLDGI 91 (239)
T ss_pred ECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHhCCCCCEE
Confidence 445555555555554 357899999999877664333221 1244555555532 233332211001 368999
Q ss_pred EEcCCCC
Q psy7191 163 IMDVGIS 169 (413)
Q Consensus 163 LfDLGvS 169 (413)
+...|++
T Consensus 92 i~~ag~~ 98 (239)
T PRK08703 92 VHCAGYF 98 (239)
T ss_pred EEecccc
Confidence 9988874
No 442
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=37.56 E-value=67 Score=32.80 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=66.2
Q ss_pred CEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcCC---C-CeEEEecCCC-ChHHHHHhcCCCCCCcc
Q psy7191 87 VTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAAND---P-RLVPVYGKFS-DLPNILKNMNNNFNSID 160 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~~---~-rv~~i~~nFs-~l~~~L~~~~~~~~~VD 160 (413)
-..||.-.|+.. -..||.. ..+-+.+|.|+|+.+++.|++..+.. . ++++++..=. .+ +...-...+.+|
T Consensus 104 v~glDIGTGAsc-IYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i---~~~i~~~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASC-IYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI---FDGIIQPNERFD 179 (299)
T ss_dssp -EEEEES-TTTT-HHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS---TTTSTT--S-EE
T ss_pred eEeecCCccHHH-HHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc---chhhhcccceee
Confidence 367898777664 3344443 34679999999999999999876532 2 7888765321 11 111101123577
Q ss_pred EEEEcCCCCccCccCCCCccCCC-C--CCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHcc
Q psy7191 161 GIIMDVGISDSQANSTRGFKPDS-N--SLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYT 236 (413)
Q Consensus 161 GILfDLGvSS~Qld~~RGFSf~~-d--gPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~ 236 (413)
..|=+=.+=+.+-+...|-+-+. + .|=..+..| ...+++ . .++.-+=||..+-.+|.+.=+..+.+
T Consensus 180 ftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~-------~---~El~~~GGEv~FV~rMI~ES~~~~~~ 249 (299)
T PF05971_consen 180 FTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQ-------S---NELWCEGGEVAFVKRMIKESLQLKDQ 249 (299)
T ss_dssp EEEE-----SS---------------------------------------T---TTTHHHHTHHHHHHHHHHHHHHHGGG
T ss_pred EEecCCccccChhhhcccccccccccccccccccCccccCCCC-------c---ceEEcCCccHHHHHHHHHHHHHhCCC
Confidence 77766665222222222211111 0 000011222 111111 1 13556778888888887766666531
Q ss_pred -------CCCCCCHHHHHHHHHhh
Q psy7191 237 -------FKKLERTRDLNELVASV 253 (413)
Q Consensus 237 -------~~~i~TT~eL~~iI~~~ 253 (413)
...-.+-..|...+++.
T Consensus 250 v~WfTsmvgKkssL~~l~~~L~~~ 273 (299)
T PF05971_consen 250 VRWFTSMVGKKSSLKPLKKELKKL 273 (299)
T ss_dssp EEEEEEEESSGGGHHHHHHHHHHT
T ss_pred cEEEeecccCcccHHHHHHHHHhc
Confidence 22233445555555543
No 443
>PRK05993 short chain dehydrogenase; Provisional
Probab=37.55 E-value=2.4e+02 Score=26.94 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=45.4
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhc-CCCCCCccEEEEc
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNM-NNNFNSIDGIIMD 165 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~-~~~~~~VDGILfD 165 (413)
.|-|+||=-.++.+.+ .+.+|++++++++.++.... ..+.++..+..+... +++.. ....+.+|.++.+
T Consensus 9 ItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~ 83 (277)
T PRK05993 9 ITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNN 83 (277)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEEC
Confidence 4555666666666655 35799999999887754322 146677888877543 23321 0001368999988
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|+.
T Consensus 84 Ag~~ 87 (277)
T PRK05993 84 GAYG 87 (277)
T ss_pred CCcC
Confidence 8874
No 444
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=37.50 E-value=32 Score=34.23 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcccCCeEEEEE-ccchh
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKC-NSIVE 339 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VIS-FHSLE 339 (413)
.|+..+..|..+|||||++++|. ..+|.
T Consensus 148 ~le~~i~~a~~~lk~~G~l~~V~r~erl~ 176 (248)
T COG4123 148 DLEDLIRAAAKLLKPGGRLAFVHRPERLA 176 (248)
T ss_pred CHHHHHHHHHHHccCCCEEEEEecHHHHH
Confidence 46778999999999999999664 44443
No 445
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=37.49 E-value=32 Score=33.17 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcccCCeEEEEEccc
Q psy7191 314 NYAMIIAEKYLKPEGLLLTKCNSI 337 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VISFHS 337 (413)
...+..+.++|+|||++++..+..
T Consensus 163 ~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 163 ERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred HHHHHHHHHHcCCCcEEEEEEeec
Confidence 467888999999999999977643
No 446
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=36.92 E-value=41 Score=33.86 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcccCCeEEEEEcc--chhh
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNS--IVED 340 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFH--SLED 340 (413)
...+|..+.+.|+|||+++++.-+ ++++
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~ 302 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTRIDLES 302 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCCCCHHH
Confidence 477899999999999999988744 5553
No 447
>PRK06482 short chain dehydrogenase; Provisional
Probab=36.89 E-value=1.9e+02 Score=27.41 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=49.2
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||=-.+|...+ .+.+|++++++++.++..++... .++.++..+..+.+.+ +.+.--....+|+++..-
T Consensus 7 VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 84 (276)
T PRK06482 7 ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG--DRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNA 84 (276)
T ss_pred EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4666676666666665 34689999999987765443321 2788889988876533 222100013589999888
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|+++
T Consensus 85 g~~~ 88 (276)
T PRK06482 85 GYGL 88 (276)
T ss_pred CCCC
Confidence 8754
No 448
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=36.64 E-value=1.8e+02 Score=28.89 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=52.4
Q ss_pred CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191 83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDG 161 (413)
Q Consensus 83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG 161 (413)
+++|..++-.-.+.|---.++-+-. |+|.|||+...|.....--.+.+.-+++..|..+-....+|-.- + +.||.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l--v--~~VDv 146 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRML--V--EMVDV 146 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTT--S----EEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcc--c--ccccE
Confidence 6788888888888886666777766 58999999999966443222222225899898888877766432 2 37999
Q ss_pred EEEcCC
Q psy7191 162 IIMDVG 167 (413)
Q Consensus 162 ILfDLG 167 (413)
|..|.-
T Consensus 147 I~~DVa 152 (229)
T PF01269_consen 147 IFQDVA 152 (229)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 998864
No 449
>PF14350 Beta_protein: Beta protein
Probab=36.59 E-value=1.7e+02 Score=29.61 Aligned_cols=74 Identities=26% Similarity=0.450 Sum_probs=43.4
Q ss_pred cCCchhHHH-HHHhc---CC--CEEEEEeCCHHHHHHHHhhhcC-CCCeE--EEecCCCC------hHHHHHhcCCCCCC
Q psy7191 94 YGDGNHTRL-ILENI---GN--VKVICLDRDKESFEKAKTLAAN-DPRLV--PVYGKFSD------LPNILKNMNNNFNS 158 (413)
Q Consensus 94 lG~GGHS~a-ILe~~---p~--g~Via~DrD~~Al~~Ak~ll~~-~~rv~--~i~~nFs~------l~~~L~~~~~~~~~ 158 (413)
...|.|-.. +++.+ .. .=|+++|.+.+.+.......+. ...+- +-...+.+ +..++...++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iPVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~~l~~~~~~ 155 (347)
T PF14350_consen 76 LDSGNHPLNYWIDFLSRLGNQIIPVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILAALGLSPNE 155 (347)
T ss_pred ccccchHHHHHHHHHHHcCCeEEEEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHHHcCCCccc
Confidence 455555555 54444 22 2578999999777766554422 22333 33333433 66777777765555
Q ss_pred ccEEEEcCCC
Q psy7191 159 IDGIIMDVGI 168 (413)
Q Consensus 159 VDGILfDLGv 168 (413)
+| +|+|+|.
T Consensus 156 ~~-lilD~~~ 164 (347)
T PF14350_consen 156 VD-LILDLGD 164 (347)
T ss_pred eE-EEEECCc
Confidence 54 6779996
No 450
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=36.55 E-value=49 Score=30.28 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcccCCeEEEEEccchh
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNSIVE 339 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFHSLE 339 (413)
+...|..+..+|+|||++++.+|-...
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 567899999999999999998875543
No 451
>KOG1271|consensus
Probab=36.54 E-value=42 Score=32.72 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=30.0
Q ss_pred HHHHHhhcccCCeEEEEEccchhhHHHHHHHhhc
Q psy7191 317 MIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350 (413)
Q Consensus 317 L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~ 350 (413)
+....++|+|||+++|-|-.--+|.+|++|=..+
T Consensus 164 ~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 164 LDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred hhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 5667789999999999999999999999987763
No 452
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=36.40 E-value=50 Score=31.23 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=36.4
Q ss_pred cchHhHHhccCCCC-CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh
Q psy7191 71 RTFQTSASGLNDSS-DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA 129 (413)
Q Consensus 71 vll~evi~~L~~~~-~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll 129 (413)
.|+..+++.+ |. +.++|||.=+|+|.=+..++. +..+|+.-|.++..+...+..+
T Consensus 7 ~l~~~I~~~i--p~~~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 7 KLAKWIIELI--PKNKHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GGHHHHHHHS---S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHH
Confidence 4677777777 34 789999998888844443332 5678999999999888876443
No 453
>PRK12828 short chain dehydrogenase; Provisional
Probab=36.08 E-value=1e+02 Score=27.94 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=43.2
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCccEEEEcCC
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDLG 167 (413)
|-|.||=-..+.+.+ .+.+|+++|+++.-.....+.+.. ..+.++..+..+... .+++..-..+++|+|+...|
T Consensus 13 tGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 13 TGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-DALRIGGIDLVDPQAARRAVDEVNRQFGRLDALVNIAG 91 (239)
T ss_pred ECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-cCceEEEeecCCHHHHHHHHHHHHHHhCCcCEEEECCc
Confidence 445555455555544 356899999987654432222211 246667777766443 23321101236899998888
Q ss_pred CCc
Q psy7191 168 ISD 170 (413)
Q Consensus 168 vSS 170 (413)
...
T Consensus 92 ~~~ 94 (239)
T PRK12828 92 AFV 94 (239)
T ss_pred ccC
Confidence 753
No 454
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.04 E-value=1.4e+02 Score=28.37 Aligned_cols=72 Identities=4% Similarity=0.014 Sum_probs=41.9
Q ss_pred hhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEEEEcCCCC
Q psy7191 98 NHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 98 GHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfDLGvS 169 (413)
|=-.++.+.+ .+.+|+..|++..+.+..++..+..+.+.++..+.++.. ++++...-..+.+|.++.+.|++
T Consensus 23 GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 23 SIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRLDFLLHSIAFA 99 (258)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCCCEEEEcCccC
Confidence 5666666665 346898889987654433333222234456777776643 33333211124699999999874
No 455
>PRK04457 spermidine synthase; Provisional
Probab=35.81 E-value=42 Score=32.95 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcccCCeEEEEEccc
Q psy7191 314 NYAMIIAEKYLKPEGLLLTKCNSI 337 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VISFHS 337 (413)
..++..+.+.|+|||+++|-.+++
T Consensus 157 ~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCC
Confidence 578899999999999999854443
No 456
>PRK05693 short chain dehydrogenase; Provisional
Probab=35.67 E-value=1.2e+02 Score=28.83 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=46.4
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDL 166 (413)
.|-|+||--.++.+.+ .+.+|+++|++++.++.... ..+.++..+.++... .++...-..+.+|.++...
T Consensus 6 ItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 6 ITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA-----AGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4666777777777765 34699999999877654322 135566777766433 3332210123699999998
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|+..
T Consensus 81 g~~~ 84 (274)
T PRK05693 81 GYGA 84 (274)
T ss_pred CCCC
Confidence 8753
No 457
>PRK09186 flagellin modification protein A; Provisional
Probab=35.54 E-value=1.7e+02 Score=27.11 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=45.5
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhh-cCC--CCeEEEecCCCChHH---HHHhcCCCCCCccEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLA-AND--PRLVPVYGKFSDLPN---ILKNMNNNFNSIDGII 163 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll-~~~--~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGIL 163 (413)
.|-|+||=-.++.+.+ .+.+|++++++++.++.+.+.+ ..+ ..+.++..+..+.+. ++++..-..+.+|.++
T Consensus 9 ItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~id~vi 88 (256)
T PRK09186 9 ITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGKIDGAV 88 (256)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCCccEEE
Confidence 3444555555555554 3468999999988877654433 222 256777888877543 3332110113589999
Q ss_pred EcCCC
Q psy7191 164 MDVGI 168 (413)
Q Consensus 164 fDLGv 168 (413)
.+.|.
T Consensus 89 ~~A~~ 93 (256)
T PRK09186 89 NCAYP 93 (256)
T ss_pred ECCcc
Confidence 88765
No 458
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=35.48 E-value=86 Score=29.19 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=38.5
Q ss_pred HHHHhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCC
Q psy7191 199 YQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRP 256 (413)
Q Consensus 199 ~~vlN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~ 256 (413)
-+-+|.++.++....|..-=|-..| |..+...| ||.+..+|......++-.
T Consensus 8 l~~~N~l~~~~f~~~l~~~~e~~~W---a~~~~~~R----Pf~s~~~L~~a~~~~~~~ 58 (166)
T PRK13798 8 LAEFNALPERQAVHALFECCHSTAW---ARRLAAAR----PFADHDALLAAADEALAG 58 (166)
T ss_pred HHHHhCCCHHHHHHHHHHHhcChHH---HHHHHHcC----CCCCHHHHHHHHHHHHHc
Confidence 5778999999988887665454433 34555566 999999999999888754
No 459
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=35.40 E-value=1.7e+02 Score=30.22 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=44.2
Q ss_pred cCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191 94 YGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 94 lG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDL 166 (413)
+|+|.-...+.+.+ .+..|+.+|+|++.++..++. ..+.++.++..+.. .|.+.++. .+|.+++-.
T Consensus 6 iG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~----~~~~~~~gd~~~~~-~l~~~~~~--~a~~vi~~~ 73 (453)
T PRK09496 6 VGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR----LDVRTVVGNGSSPD-VLREAGAE--DADLLIAVT 73 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh----cCEEEEEeCCCCHH-HHHHcCCC--cCCEEEEec
Confidence 48888888888776 246899999999987765441 13666777776643 45555543 577777543
No 460
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=35.33 E-value=63 Score=31.80 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHh
Q psy7191 307 NNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLT 348 (413)
Q Consensus 307 N~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~ 348 (413)
++-|+.++..+..+..+|+|||.+++-.-++-.+. |+..|.
T Consensus 217 ~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~-~~~~~~ 257 (284)
T TIGR00536 217 DDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKS-LKELLR 257 (284)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH-HHHHHH
Confidence 45678899999999999999999988666665554 455555
No 461
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.03 E-value=1.4e+02 Score=30.11 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=43.9
Q ss_pred EEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191 89 MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168 (413)
Q Consensus 89 ~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv 168 (413)
+||.-+|.||-+..+-+. .--.+.|+|+|+.|.+.-+.+. +. .+++++-.++ -.. .+ ..+|.++.-..|
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~---~~-~~~~~Di~~~---~~~-~~--~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANF---GN-KVPFGDITKI---SPS-DI--PDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhC---CC-CCCccChhhh---hhh-hC--CCcCEEEecCCC
Confidence 589999999999998654 2224579999999998765543 32 3334443333 211 12 248888865555
No 462
>PRK05875 short chain dehydrogenase; Provisional
Probab=34.99 E-value=2e+02 Score=27.17 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=47.2
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHH---HHhcCCCCCCccEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGII 163 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGIL 163 (413)
.|=|+||=..++.+.+ .+.+|+++++++...+...+.+... .++.++..+..+.+.+ +++..-..+.+|+++
T Consensus 12 ItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li 91 (276)
T PRK05875 12 VTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGRLHGVV 91 (276)
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3444555556665554 2458999999987765543333221 3788888888775543 332100013589999
Q ss_pred EcCCCC
Q psy7191 164 MDVGIS 169 (413)
Q Consensus 164 fDLGvS 169 (413)
...|.+
T Consensus 92 ~~ag~~ 97 (276)
T PRK05875 92 HCAGGS 97 (276)
T ss_pred ECCCcc
Confidence 988864
No 463
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=34.86 E-value=52 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 309 ELNELNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 309 EL~~L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
|++.|.+.|..+.+.|-++.++.+|||-
T Consensus 18 el~~l~~sl~~~L~~lP~~a~VGlITfd 45 (267)
T cd01478 18 ELDALKESLIMSLSLLPPNALVGLITFG 45 (267)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 5888999999999999999999999984
No 464
>PRK08303 short chain dehydrogenase; Provisional
Probab=34.77 E-value=1.3e+02 Score=29.72 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=49.7
Q ss_pred EEEEecCCchhHHHHHHhc--CCCEEEEEeCCH----------HHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhc
Q psy7191 89 MIDMTYGDGNHTRLILENI--GNVKVICLDRDK----------ESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNM 152 (413)
Q Consensus 89 ~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~----------~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~ 152 (413)
.+=.|=|++|=-.++.+.+ .+.+|+.++++. +.++.+.+.+...+ ++.++..+.++.+. ++++.
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 89 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERI 89 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 3446777777777777776 457999999973 34444434333333 67788888876543 23321
Q ss_pred CCCCCCccEEEEcC-CC
Q psy7191 153 NNNFNSIDGIIMDV-GI 168 (413)
Q Consensus 153 ~~~~~~VDGILfDL-Gv 168 (413)
--..+.+|.++.+. |+
T Consensus 90 ~~~~g~iDilVnnA~g~ 106 (305)
T PRK08303 90 DREQGRLDILVNDIWGG 106 (305)
T ss_pred HHHcCCccEEEECCccc
Confidence 00124699999887 75
No 465
>PRK12937 short chain dehydrogenase; Provisional
Probab=34.56 E-value=1.9e+02 Score=26.54 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=48.0
Q ss_pred EEEecCCchhHHHHHHhc--CCCEEEEEeCC-HHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEE
Q psy7191 90 IDMTYGDGNHTRLILENI--GNVKVICLDRD-KESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGI 162 (413)
Q Consensus 90 VDaTlG~GGHS~aILe~~--p~g~Via~DrD-~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGI 162 (413)
+=.|-|+||--.++.+.+ .+.+|+.+.++ +...+...+.+.... ++.++..+..+.+.+ +++..-..+.+|++
T Consensus 8 vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 87 (245)
T PRK12937 8 AIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGRIDVL 87 (245)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 445777888888888776 24577766654 333333333333333 788888888876533 32211012368999
Q ss_pred EEcCCCC
Q psy7191 163 IMDVGIS 169 (413)
Q Consensus 163 LfDLGvS 169 (413)
+...|+.
T Consensus 88 i~~ag~~ 94 (245)
T PRK12937 88 VNNAGVM 94 (245)
T ss_pred EECCCCC
Confidence 9888863
No 466
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=34.31 E-value=53 Score=30.77 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHH
Q psy7191 85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESF 122 (413)
Q Consensus 85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al 122 (413)
..|-+++.-+|+|--=-++-+.+|+-++++||+.-.+.
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h 65 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH 65 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC
Confidence 34889999999995444555667999999999986553
No 467
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=34.04 E-value=2.2e+02 Score=26.81 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=42.5
Q ss_pred EEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhc--CCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191 88 TMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAA--NDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII 163 (413)
Q Consensus 88 i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~--~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL 163 (413)
.++|.--|+| .=--.|.- .|+.+++-+|-...-...-+.... ..+++++++++..+ .. ....+|.|.
T Consensus 51 ~~lDiGSGaG-fPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~---~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAG-FPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PE---YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTT-TTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TT---TTT-EEEEE
T ss_pred eEEecCCCCC-ChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cc---cCCCccEEE
Confidence 7999999998 44444443 499999999999876655433221 12479999887655 11 123678776
No 468
>PRK10458 DNA cytosine methylase; Provisional
Probab=33.93 E-value=2e+02 Score=31.19 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=32.7
Q ss_pred CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh
Q psy7191 87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL 128 (413)
Q Consensus 87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l 128 (413)
-.+||.-+|.||=+..+-.. +.-.|.++|+|+.|.+--+.+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred ceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHH
Confidence 48999999999999998543 323568999999998875554
No 469
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=33.73 E-value=2.9e+02 Score=27.46 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=46.5
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS 169 (413)
.|-|+|.--.++++.+ .+.+|+++++++.........+....+++++.++..+...+.+.. ..+|.|+--.|.+
T Consensus 15 VtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~d~Vih~A~~~ 90 (353)
T PLN02896 15 VTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAV----KGCDGVFHVAASM 90 (353)
T ss_pred EECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHH----cCCCEEEECCccc
Confidence 4556666666666665 235899999987644332222222247889999998877665432 2478887666654
No 470
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=33.66 E-value=41 Score=31.43 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
...+|..+..+|+|||++++.|-+
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEcCC
Confidence 466788999999999999988743
No 471
>PRK06953 short chain dehydrogenase; Provisional
Probab=33.47 E-value=2.9e+02 Score=25.22 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=41.7
Q ss_pred EEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc-CCCCCCccEEEEcCCCC
Q psy7191 91 DMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM-NNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 91 DaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~-~~~~~~VDGILfDLGvS 169 (413)
-+|-|-|.|...-|.. .+.+|+.+|++++..+..+. ..+.++..+.++.+.+..-. .+...++|+++..-|+.
T Consensus 8 G~sg~iG~~la~~L~~-~G~~v~~~~r~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~~ 81 (222)
T PRK06953 8 GASRGIGREFVRQYRA-DGWRVIATARDAAALAALQA-----LGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGVY 81 (222)
T ss_pred cCCCchhHHHHHHHHh-CCCEEEEEECCHHHHHHHHh-----ccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 3344444444443332 35689999999876554322 13556788887765433210 11123689999888763
No 472
>PLN02780 ketoreductase/ oxidoreductase
Probab=33.09 E-value=2.1e+02 Score=28.50 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=50.5
Q ss_pred CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhc-CCC--CeEEEecCCCC-hHH----HHHhcCCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAA-NDP--RLVPVYGKFSD-LPN----ILKNMNNN 155 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~-~~~--rv~~i~~nFs~-l~~----~L~~~~~~ 155 (413)
|.+++ .|-|+||=-.++...+ .+.+|+.+||+++.++...+.++ .++ ++..+..++++ +.+ +.+..+
T Consensus 53 g~~~l-ITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~-- 129 (320)
T PLN02780 53 GSWAL-VTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE-- 129 (320)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc--
Confidence 44443 6777777777777766 34689999999998887544332 232 56666666653 322 233322
Q ss_pred CCCccEEEEcCCCC
Q psy7191 156 FNSIDGIIMDVGIS 169 (413)
Q Consensus 156 ~~~VDGILfDLGvS 169 (413)
...+|.++.+-|++
T Consensus 130 ~~didilVnnAG~~ 143 (320)
T PLN02780 130 GLDVGVLINNVGVS 143 (320)
T ss_pred CCCccEEEEecCcC
Confidence 11367888888874
No 473
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=33.09 E-value=1.3e+02 Score=24.85 Aligned_cols=46 Identities=4% Similarity=0.018 Sum_probs=31.0
Q ss_pred hHhHHhccCCCCCCCEEEEEecCCchhHHHHHH-------hcCCCEEEEEeCC
Q psy7191 73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILE-------NIGNVKVICLDRD 118 (413)
Q Consensus 73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe-------~~p~g~Via~DrD 118 (413)
|++.++.....+...++|+.....-||.+.+.. .+++..++++|.|
T Consensus 6 ~~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~ 58 (100)
T cd02999 6 LNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES 58 (100)
T ss_pred hhHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC
Confidence 344555554233344899999999999987763 2345667888877
No 474
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=33.05 E-value=1.1e+02 Score=30.28 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=36.7
Q ss_pred CCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCC
Q psy7191 86 DVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAND 132 (413)
Q Consensus 86 ~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~ 132 (413)
...++|.-.|.|-=+-+..+..+. ..++++|.++.+++.++.+++.+
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 358999999998555555555564 57899999999999999887654
No 475
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=32.92 E-value=54 Score=31.33 Aligned_cols=30 Identities=13% Similarity=-0.089 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHhhcc--cCCeEEEEEcc
Q psy7191 307 NNELNELNYAMIIAEKYLK--PEGLLLTKCNS 336 (413)
Q Consensus 307 N~EL~~L~~~L~~a~~~L~--pgGrl~VISFH 336 (413)
+++++.+.++|..+.+.|. ++-|+++|||-
T Consensus 19 ~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd 50 (243)
T PF04811_consen 19 SGLLQSLIESLKSALDSLPGDERTRVGIITFD 50 (243)
T ss_dssp HTHHHHHHHHHHHHGCTSSTSTT-EEEEEEES
T ss_pred ccHHHHHHHHHHHHHHhccCCCCcEEEEEEeC
Confidence 4789999999999999999 99999999995
No 476
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=32.83 E-value=35 Score=33.95 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEE
Q psy7191 310 LNELNYAMIIAEKYLKPEGLLLTKC 334 (413)
Q Consensus 310 L~~L~~~L~~a~~~L~pgGrl~VIS 334 (413)
+++-..+|.....+|||||.|+.+.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5677889999999999999999875
No 477
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.69 E-value=2.2e+02 Score=26.22 Aligned_cols=78 Identities=10% Similarity=0.196 Sum_probs=46.1
Q ss_pred EecCCchhHHHHHHhc--CCCEEEE-EeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVIC-LDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via-~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILf 164 (413)
.|-|+||=-.++.+.+ .+.+|+. .++++...+.+.+.++..+ ++.++..+..+.+. .+++..-..+.+|+++.
T Consensus 9 ItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 88 (250)
T PRK08063 9 VTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVN 88 (250)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5666666666666665 2356665 6888776655443333333 67888888776543 23321101135899998
Q ss_pred cCCCC
Q psy7191 165 DVGIS 169 (413)
Q Consensus 165 DLGvS 169 (413)
..|.+
T Consensus 89 ~ag~~ 93 (250)
T PRK08063 89 NAASG 93 (250)
T ss_pred CCCCC
Confidence 88763
No 478
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=32.65 E-value=43 Score=34.51 Aligned_cols=42 Identities=36% Similarity=0.429 Sum_probs=30.4
Q ss_pred hHHHHHH-HHHHHHhhcccCCeEE--EEEccchhhHHH-HHHHhhc
Q psy7191 309 ELNELNY-AMIIAEKYLKPEGLLL--TKCNSIVEDKIV-KRHLTGN 350 (413)
Q Consensus 309 EL~~L~~-~L~~a~~~L~pgGrl~--VISFHSLEDRiV-K~~f~~~ 350 (413)
+|..|+. .|..|..+|||||+|+ +-|.+-.|..-| ..|+.+.
T Consensus 262 ~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 262 ELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence 4455544 6788899999999998 567899997655 4555543
No 479
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=32.45 E-value=61 Score=24.20 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEE
Q psy7191 310 LNELNYAMIIAEKYLKPEGLLLTK 333 (413)
Q Consensus 310 L~~L~~~L~~a~~~L~pgGrl~VI 333 (413)
.......+..+...|+|||++++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 456778888999999999999876
No 480
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.05 E-value=2.1e+02 Score=27.51 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=46.2
Q ss_pred EEEecCC--chhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEE
Q psy7191 90 IDMTYGD--GNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGI 162 (413)
Q Consensus 90 VDaTlG~--GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGI 162 (413)
+=.|-|+ +|=-.+|.+.+ .+.+|+..+++....+..+++.+....+..+..+..+.. +++++..-..+.+|.+
T Consensus 13 ~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~l 92 (272)
T PRK08159 13 GLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGKLDFV 92 (272)
T ss_pred EEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence 3345443 57777777776 356888888874333333333222233455777776643 3333321112469999
Q ss_pred EEcCCCCc
Q psy7191 163 IMDVGISD 170 (413)
Q Consensus 163 LfDLGvSS 170 (413)
+.+.|++.
T Consensus 93 v~nAG~~~ 100 (272)
T PRK08159 93 VHAIGFSD 100 (272)
T ss_pred EECCcccC
Confidence 99999864
No 481
>PF14164 YqzH: YqzH-like protein
Probab=31.96 E-value=1.1e+02 Score=24.75 Aligned_cols=44 Identities=25% Similarity=0.435 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCC--------chHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhc
Q psy7191 207 EVSLAKILKTYGEE--------KRSRQIARAIIETRYTFKKLERTRDLNELVASVS 254 (413)
Q Consensus 207 e~eL~~I~~~YGEE--------~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~ 254 (413)
++-+.+-|+.||.. ...+.+.+.|..++ ...| -.||-++|++++
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~-~~~~---~~Dl~eiVeDvV 58 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERK-NEEP---DEDLHEIVEDVV 58 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHH-hcCC---CchHHHHHHHHH
Confidence 56788999999854 46788999999888 3333 468999998876
No 482
>PRK06179 short chain dehydrogenase; Provisional
Probab=31.95 E-value=1.2e+02 Score=28.54 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=43.9
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfDL 166 (413)
.|=|+||=-.+|.+.+ .+.+|++++++++.... ..+++++..+..+.+. .++...-..+.+|.++...
T Consensus 9 VtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~a 81 (270)
T PRK06179 9 VTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-------IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNA 81 (270)
T ss_pred EecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-------cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3445555555555554 34689999999765431 1357778888777543 3332110123689999999
Q ss_pred CCCc
Q psy7191 167 GISD 170 (413)
Q Consensus 167 GvSS 170 (413)
|++.
T Consensus 82 g~~~ 85 (270)
T PRK06179 82 GVGL 85 (270)
T ss_pred CCCC
Confidence 8854
No 483
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=31.95 E-value=41 Score=34.34 Aligned_cols=28 Identities=7% Similarity=-0.073 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEEccc
Q psy7191 310 LNELNYAMIIAEKYLKPEGLLLTKCNSI 337 (413)
Q Consensus 310 L~~L~~~L~~a~~~L~pgGrl~VISFHS 337 (413)
+.....+|..+..+|+|||++++-+++.
T Consensus 211 v~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 3345678999999999999999998764
No 484
>PRK07806 short chain dehydrogenase; Provisional
Probab=31.95 E-value=2.3e+02 Score=26.12 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=45.4
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCHH-HHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDKE-SFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~~-Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
|-|+||=-.++.+.+ .+..|++++++.. ..+.....++... ++.++..+..+.+.+ +++..-..+.+|.++..
T Consensus 12 tGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ 91 (248)
T PRK07806 12 TGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGLDALVLN 91 (248)
T ss_pred ECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 555566666666654 3468999998753 3333322222222 678888888876543 33211111358999999
Q ss_pred CCCC
Q psy7191 166 VGIS 169 (413)
Q Consensus 166 LGvS 169 (413)
.|.+
T Consensus 92 ag~~ 95 (248)
T PRK07806 92 ASGG 95 (248)
T ss_pred CCCC
Confidence 9864
No 485
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=31.94 E-value=63 Score=30.66 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=27.9
Q ss_pred CCCCEEEEEecCCc------hhHHHHHHhcC--CCEEEEEeCCH
Q psy7191 84 SDDVTMIDMTYGDG------NHTRLILENIG--NVKVICLDRDK 119 (413)
Q Consensus 84 ~~~~i~VDaTlG~G------GHS~aILe~~p--~g~Via~DrD~ 119 (413)
.+..++|||=||.| |.-..+++.+. +..|+++|+=.
T Consensus 113 ~~~dliIDalfGtGl~~~l~~~~~~~i~~iN~~~~~vlAiDiPS 156 (205)
T TIGR00197 113 EDCDVIIDAILGTGFKGKLREPFKTIVESINELPAPIVSVDIPS 156 (205)
T ss_pred ccCCEEEEeeecCCCCCccchHHHHHHHHHHhCCCCeEEEecCC
Confidence 34689999999999 66777777762 46789999853
No 486
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=31.93 E-value=89 Score=30.42 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=40.9
Q ss_pred HHHHhcCCCEEEEEeCCHHHHHHHHhhhcC----------C-CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 102 LILENIGNVKVICLDRDKESFEKAKTLAAN----------D-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 102 aILe~~p~g~Via~DrD~~Al~~Ak~ll~~----------~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
++=+..+..+|+|+|+++..++.|.++--. . ..+.++....+.+..++++..- .-+.+.++.|.|
T Consensus 4 aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~-~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 4 ALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAP-YLKPGAIVTDVG 79 (258)
T ss_dssp HHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHC-GS-TTSEEEE--
T ss_pred HHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhh-hcCCCcEEEEeC
Confidence 444444678999999999999998543110 0 1577788888888888877532 124678999987
No 487
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=31.80 E-value=40 Score=34.22 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=34.2
Q ss_pred CCCCCCCCc-------ccccccccCccHHHHHHHHHHHHhhcCCcccchhH
Q psy7191 4 SVLPGPSST-------QFGLEEHMSLDFAEYLRELTRAQFVSNNKFTIEEE 47 (413)
Q Consensus 4 ~~~~~~~~~-------~~~~~~~~grdl~~~lr~~~~~~~~~~~~~~~~~~ 47 (413)
.++|||.+- .|+......-|+++.||+.+++-..+....||+++
T Consensus 132 ~vl~GP~T~~~~s~~~~Y~~~e~l~~~~a~~l~~e~~~L~~G~~~IQiDEP 182 (326)
T PRK08575 132 AVLPGPLTYAVLSDNEYYKNLIELMEDYASVVNSLIKELSSVVDAVEIHEP 182 (326)
T ss_pred EEEecHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCc
Confidence 478999542 25566677789999999999976656788999988
No 488
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=31.73 E-value=73 Score=33.41 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcccCCeEEEEE--ccchhhH-HHHHHHhh
Q psy7191 314 NYAMIIAEKYLKPEGLLLTKC--NSIVEDK-IVKRHLTG 349 (413)
Q Consensus 314 ~~~L~~a~~~L~pgGrl~VIS--FHSLEDR-iVK~~f~~ 349 (413)
+..|..+..+|+|||+++..| ++..|.. .|..++++
T Consensus 352 ~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 352 SEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 467889999999999999654 4555544 45666654
No 489
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=31.58 E-value=2.9e+02 Score=25.86 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=44.7
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEEEEcC
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIMDV 166 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILfDL 166 (413)
.|-|.||=-.++.+.+ .+.+|+++|+.... +..++..+...++..++.+..+.+ .++++..-..+.+|+++.+.
T Consensus 15 ItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~li~~A 93 (253)
T PRK08993 15 VTGCDTGLGQGMALGLAEAGCDIVGINIVEPT-ETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNA 93 (253)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEecCcchH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 4666777777777766 35789999886431 111222111126778888887643 33333111123699999988
Q ss_pred CC
Q psy7191 167 GI 168 (413)
Q Consensus 167 Gv 168 (413)
|+
T Consensus 94 g~ 95 (253)
T PRK08993 94 GL 95 (253)
T ss_pred CC
Confidence 86
No 490
>PRK08219 short chain dehydrogenase; Provisional
Probab=31.26 E-value=2.4e+02 Score=25.34 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=43.4
Q ss_pred EecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191 92 MTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS 169 (413)
Q Consensus 92 aTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS 169 (413)
.|-|+||=...+.+.+ ...+|+++|+++..++...+. .+.+.++..+..+...+..-... ...+|+|+.-.|+.
T Consensus 8 VtG~~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~-~~~id~vi~~ag~~ 82 (227)
T PRK08219 8 ITGASRGIGAAIARELAPTHTLLLGGRPAERLDELAAE---LPGATPFPVDLTDPEAIAAAVEQ-LGRLDVLVHNAGVA 82 (227)
T ss_pred EecCCcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHHH---hccceEEecCCCCHHHHHHHHHh-cCCCCEEEECCCcC
Confidence 3444554444444443 117899999998765443322 23577788888876544322110 12589999888863
No 491
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=31.12 E-value=51 Score=31.30 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=33.8
Q ss_pred CccccchHhHHh-ccCCCC--CCCEEEEEecCCch--hHHHHHHhc------C-CCEEEEEeCCHHHHHHHHh
Q psy7191 67 KKYPRTFQTSAS-GLNDSS--DDVTMIDMTYGDGN--HTRLILENI------G-NVKVICLDRDKESFEKAKT 127 (413)
Q Consensus 67 ~H~pvll~evi~-~L~~~~--~~~i~VDaTlG~GG--HS~aILe~~------p-~g~Via~DrD~~Al~~Ak~ 127 (413)
.|.-.|-++++. .+.... +.-.+..+-|++|= +|.+|+-.- + ..+|+|.|+|+.|++.|++
T Consensus 10 ~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 10 EQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp THHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 344455566663 332111 22345666666664 566665432 2 3599999999999999976
No 492
>PRK08317 hypothetical protein; Provisional
Probab=31.04 E-value=79 Score=28.77 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcccCCeEEEEEc
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCN 335 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISF 335 (413)
...++..+.++|+|||++++..+
T Consensus 103 ~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 103 PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred HHHHHHHHHHHhcCCcEEEEEec
Confidence 46678889999999999998653
No 493
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=30.75 E-value=2.2e+02 Score=23.58 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=39.8
Q ss_pred chhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191 97 GNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG 167 (413)
Q Consensus 97 GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG 167 (413)
|-.+..++.... ++|+++|.++..++.++++-. -.++..+-.++.+.+.+..-. ..+|.++==.|
T Consensus 3 G~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga----~~~~~~~~~~~~~~i~~~~~~-~~~d~vid~~g 67 (130)
T PF00107_consen 3 GLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA----DHVIDYSDDDFVEQIRELTGG-RGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE----SEEEETTTSSHHHHHHHHTTT-SSEEEEEESSS
T ss_pred HHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc----ccccccccccccccccccccc-ccceEEEEecC
Confidence 444556666656 999999999999998877421 122444444466666554211 25777665444
No 494
>PRK06701 short chain dehydrogenase; Provisional
Probab=30.70 E-value=2e+02 Score=27.93 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=45.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeCCHH-HHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDRDKE-SFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~-Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILf 164 (413)
.|-|+||=-.++...+ .+.+|+.+++++. ..+.....++... ++.++..+..+...+ +++..-....+|+++.
T Consensus 51 ItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~ 130 (290)
T PRK06701 51 ITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRLDILVN 130 (290)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4555666666666555 3578999988753 2333333333333 788888888775433 3221000135899999
Q ss_pred cCCCCc
Q psy7191 165 DVGISD 170 (413)
Q Consensus 165 DLGvSS 170 (413)
..|+++
T Consensus 131 ~Ag~~~ 136 (290)
T PRK06701 131 NAAFQY 136 (290)
T ss_pred CCcccC
Confidence 888753
No 495
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.66 E-value=2.1e+02 Score=27.10 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=42.6
Q ss_pred EecCCc--hhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHHHhcCCCCCCccEEEE
Q psy7191 92 MTYGDG--NHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~G--GHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L~~~~~~~~~VDGILf 164 (413)
.|-|.+ |=-.++.+.+ ...+|+..|+++..-+.++++.+..+...++..+.++.+ .+++...-..+.+|.++.
T Consensus 13 ITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn 92 (260)
T PRK06603 13 ITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGSFDFLLH 92 (260)
T ss_pred EECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCCccEEEE
Confidence 565554 4455555554 346898889885433333333222232335667776643 333332111246999998
Q ss_pred cCCCC
Q psy7191 165 DVGIS 169 (413)
Q Consensus 165 DLGvS 169 (413)
+.|+.
T Consensus 93 nag~~ 97 (260)
T PRK06603 93 GMAFA 97 (260)
T ss_pred ccccC
Confidence 88874
No 496
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=30.37 E-value=74 Score=30.54 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcccCCeEEEEE
Q psy7191 312 ELNYAMIIAEKYLKPEGLLLTKC 334 (413)
Q Consensus 312 ~L~~~L~~a~~~L~pgGrl~VIS 334 (413)
....++..+...|+|||++++..
T Consensus 142 ~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 142 ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEE
Confidence 45678899999999999999876
No 497
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=30.20 E-value=2.1e+02 Score=25.89 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=44.4
Q ss_pred ecCCchhHHHHHHhc--CCCEEEEEeCCH-HHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191 93 TYGDGNHTRLILENI--GNVKVICLDRDK-ESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD 165 (413)
Q Consensus 93 TlG~GGHS~aILe~~--p~g~Via~DrD~-~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD 165 (413)
|-|+||-...+.+.+ ...+|+++++.+ ..++.....++..+ ++.++..+..+...+ +....-....+|+++..
T Consensus 4 tG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 83 (239)
T TIGR01830 4 TGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDILVNN 83 (239)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 556677777776665 346899999875 32222222222223 688888888776533 32211011358999987
Q ss_pred CCC
Q psy7191 166 VGI 168 (413)
Q Consensus 166 LGv 168 (413)
.|.
T Consensus 84 ag~ 86 (239)
T TIGR01830 84 AGI 86 (239)
T ss_pred CCC
Confidence 775
No 498
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=30.09 E-value=1.1e+02 Score=29.77 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh
Q psy7191 84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT 127 (413)
Q Consensus 84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ 127 (413)
..+..++....|+|=|..++...+|+..-.--|.|+..+..-..
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a 67 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRA 67 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHH
Confidence 33335999999999999999999999888899999988755443
No 499
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=30.09 E-value=50 Score=31.64 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcccCCeEEEEEcc
Q psy7191 313 LNYAMIIAEKYLKPEGLLLTKCNS 336 (413)
Q Consensus 313 L~~~L~~a~~~L~pgGrl~VISFH 336 (413)
...+|..+...|+|||++++....
T Consensus 105 ~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 105 HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 366788899999999999986543
No 500
>PRK09134 short chain dehydrogenase; Provisional
Probab=29.97 E-value=2.7e+02 Score=25.97 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=42.8
Q ss_pred EecCCchhHHHHHHhc--CCCEEEEEeC-CHHHHHHHHhhhcC-CCCeEEEecCCCChHH---HHHhcCCCCCCccEEEE
Q psy7191 92 MTYGDGNHTRLILENI--GNVKVICLDR-DKESFEKAKTLAAN-DPRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIM 164 (413)
Q Consensus 92 aTlG~GGHS~aILe~~--p~g~Via~Dr-D~~Al~~Ak~ll~~-~~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILf 164 (413)
.|=|+||=-.++.+.+ .+..|+.+++ +....+.+...+.. ..++.++..+..+... ++++..-..+.+|+++.
T Consensus 14 ItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~ 93 (258)
T PRK09134 14 VTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGPITLLVN 93 (258)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3445555555555554 3467877665 45444443332222 2378888888776443 33321101236999999
Q ss_pred cCCCC
Q psy7191 165 DVGIS 169 (413)
Q Consensus 165 DLGvS 169 (413)
..|+.
T Consensus 94 ~ag~~ 98 (258)
T PRK09134 94 NASLF 98 (258)
T ss_pred CCcCC
Confidence 88874
Done!