RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7191
(413 letters)
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 69.0 bits (168), Expect = 2e-14
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 5/169 (2%)
Query: 65 YNKK-YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFE 123
Y+++ P + L + ++D T G+G H+R ILE+ ++I +D D E
Sbjct: 3 YSQRHIPVMVREVIEFLKPEDEK-IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLR 61
Query: 124 -KAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPD 182
+ L R+ + + +LK + +DGI+MD+G+S Q +
Sbjct: 62 IAEEKLKEFSDRVSLFKVSYREADFLLKTLG--IEKVDGILMDLGVSTYQLKGENRELEN 119
Query: 183 SNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAII 231
L G V+ + + + +T+ K+ R + +
Sbjct: 120 LKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNSKKLRILTEKPV 168
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 59.4 bits (143), Expect = 4e-11
Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 7/154 (4%)
Query: 78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVP 137
L +D T G H R ILE G +VI LD+D E+ +AK + P L
Sbjct: 12 DLLAVRPGG-VYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKG--LHLPGLTV 66
Query: 138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGIT 197
V G F L L + +DGI+ D+G+S + L+
Sbjct: 67 VQGNFRHLKRHLAALG--VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG 124
Query: 198 GYQVLSAIDEVSLAKILKTYGEEKRSRQIARAII 231
G V+ A + + + E + ++
Sbjct: 125 GRLVVIAFHSLEDRVVKRFLRESGLKVLTKKPLV 158
Score = 26.3 bits (57), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 305 FVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHL 347
++ELN L + A + L P G L+ +ED++VKR L
Sbjct: 102 DPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFL 144
>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872,
insert domain {Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 49.0 bits (116), Expect = 3e-08
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 33/131 (25%)
Query: 177 RGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYT 236
RGF LDMRM EG T +V++ + +LA++L+ GEE ++ +IARAI+ R
Sbjct: 1 RGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAR-- 58
Query: 237 FKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQ 296
E T + + + H A+
Sbjct: 59 ------------------------------EKAPIETTTQLAEIVRKAVGFRRAG-HPAR 87
Query: 297 KVYNGLRRFVN 307
K + LR +VN
Sbjct: 88 KTFQALRIYVN 98
>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872,
insert domain {Thermotoga maritima [TaxId: 2336]}
Length = 101
Score = 46.7 bits (110), Expect = 2e-07
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 177 RGFKPDSNSLLDMRMSQE-GITGYQVLSAIDEVSLAKILKTYGEEKR-SRQIARAIIETR 234
RGF + LDMRM E +T +VL+ + E LA+I+ YGEEKR +R+IAR I+E R
Sbjct: 2 RGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR 61
Query: 235 YTFKKLERTRDLNELVASVSRPSQTWKRACRT 266
L+ + + E + S + A +T
Sbjct: 62 PLNTTLDLVKAVREALPSYEIRRRKRHFATKT 93
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 31.2 bits (70), Expect = 0.21
Identities = 5/52 (9%), Positives = 18/52 (34%)
Query: 82 DSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP 133
+++ ++D+ G G + + + L++ ++ P
Sbjct: 40 KHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP 91
>d1dvka_ a.72.1.1 (A:) Functional domain of the splicing factor
Prp18 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 169
Score = 28.6 bits (64), Expect = 0.97
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 20/104 (19%)
Query: 275 ASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFV-------NNELNELNYAMII-AEKYLKP 326
A V +DP + GS + ++ L + + + +K L P
Sbjct: 8 AQDKTISVIIDPSQIGSTEGKPLLSMKCNLYIHEILSRWKASLEAYHPELFLDTKKALFP 67
Query: 327 EGLLLTKCNSIVEDKIVKRHLTGNVIEHC--------ANDLALK 362
LL + + L V+ H A +K
Sbjct: 68 ---LLLQLRRNQLAPDLLISLA-TVLYHLQQPKEINLAVQSYMK 107
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 28.4 bits (62), Expect = 1.5
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 97 GNH-TRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNN 155
G++ + N +V V LD+ + KA A R+ V G +D ++ +
Sbjct: 15 GSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD-AELVDKLAAK 73
Query: 156 FNSIDGIIMDVGISDSQAN 174
++I + +S +
Sbjct: 74 ADAIVHYAAESHNDNSLND 92
>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 248
Score = 27.8 bits (60), Expect = 2.2
Identities = 6/55 (10%), Positives = 19/55 (34%)
Query: 111 KVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD 165
+ R++E ++ + LA N + + + K + + ++
Sbjct: 31 HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLN 85
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 27.2 bits (58), Expect = 4.2
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 97 GNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNF 156
GNH L + +V LD ++ + N P V G S ++
Sbjct: 13 GNHLTERLLREDHYEVYGLDIGSDAISRFL----NHPHFHFVEGDISIHSEWIEYHVKKC 68
Query: 157 N 157
+
Sbjct: 69 D 69
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
K1F [TaxId: 344021]}
Length = 516
Score = 26.9 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 62 EDIYNKKYPRTFQTSASGLNDSSDDVTMIDMT 93
+D Y YPRTF + N ++DD+ +++T
Sbjct: 414 DDRYKASYPRTFYARLNVNNWNADDIEWVNIT 445
>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase
{Lactobacillus brevis [TaxId: 1580]}
Length = 251
Score = 26.5 bits (58), Expect = 6.5
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 111 KVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN---NNFNSIDGIIMDVG 167
KV+ R + EKA ++ SD K + F + ++ + G
Sbjct: 32 KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAG 91
Query: 168 I 168
I
Sbjct: 92 I 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,446,013
Number of extensions: 67170
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 15
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.8 bits)