BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7193
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V7D2|VATD1_DROME V-type proton ATPase subunit D 1 OS=Drosophila melanogaster
GN=Vha36-1 PE=2 SV=1
Length = 246
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD+LPI PSRG Q ++ARL A++GHGLLK+KADALQ RFR I KI+ET+ LM D+M
Sbjct: 3 GKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGDVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
+EAA +L+ AKF T+ NQ+V+QN+ KAQ+K+R ++N+ GV L +E+ ++G D Y++
Sbjct: 63 KEAAFSLAEAKF-TSGDINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTYEL 121
Query: 124 AGLSTNGHHL 133
AGL+ G L
Sbjct: 122 AGLARGGQQL 131
>sp|Q9U0S4|VATD_MANSE V-type proton ATPase subunit D OS=Manduca sexta PE=2 SV=1
Length = 246
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD+L I PSRG Q ++ RL A++GHGLLK+KADALQ RFR I KI+ET+ LM ++M
Sbjct: 3 GKDRLAIFPSRGAQMLMKGRLAGAQKGHGLLKKKADALQVRFRLILSKIIETKTLMGEVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
+EAA +L+ AKF T FNQ+V+QN+ KAQ+K+R ++N+ GV L +E+ ++G D Y++
Sbjct: 63 KEAAFSLAEAKF-TTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYEL 121
Query: 124 AGLSTNGHHL 133
AGL+ G L
Sbjct: 122 AGLARGGQQL 131
>sp|Q9NEF6|VATD2_DROME Probable V-type proton ATPase subunit D 2 OS=Drosophila
melanogaster GN=Vha36-3 PE=3 SV=1
Length = 249
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
KD+LPI PSRG Q+ +++RL A +GHGLLK+KADALQ RFR I KI+ET+ LM +M
Sbjct: 3 AKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
+EAA +L+ KF T + NQIV+QN+ KAQ+K+R ++N+ GV L +E +G D Y++
Sbjct: 63 KEAAFSLAEVKFTTGDI-NQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYEL 121
Query: 124 AGLSTNGHHL 133
AGL+ G L
Sbjct: 122 AGLARGGQQL 131
>sp|P34462|VATD_CAEEL V-type proton ATPase subunit D OS=Caenorhabditis elegans GN=vha-14
PE=3 SV=1
Length = 257
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ + PSR Q+ ++ RL A++GH LLK+KADAL RFR I KIVE + LM ++M
Sbjct: 5 GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
+EAA +L+ AKF T F+ VIQN+ +AQ ++R+ +EN+ GVFL ++A ++GPD Y +
Sbjct: 65 KEAAFSLAEAKF-TAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDL 123
Query: 124 AGLSTNGHHL 133
GL G ++
Sbjct: 124 TGLGKGGANI 133
>sp|Q61IU3|VATD_CAEBR V-type proton ATPase subunit D OS=Caenorhabditis briggsae GN=vha-14
PE=3 SV=1
Length = 259
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ + PSR Q+ ++ RL A++GH LLK+KADAL RFR I KIVE + LM ++M
Sbjct: 6 GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILKKIVENKVLMGEVM 65
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
+EAA +L+ AKF T F+ VIQN+ +AQ ++R+ +EN+ GV L ++A ++GPD Y +
Sbjct: 66 KEAAFSLAEAKF-TAGDFSHTVIQNVSQAQYRVRMKKENVVGVLLPVFDAYQDGPDAYDL 124
Query: 124 AGLSTNGHHL 133
GL G ++
Sbjct: 125 TGLGKGGANI 134
>sp|Q5RCS8|VATD_PONAB V-type proton ATPase subunit D OS=Pongo abelii GN=ATP6V1D PE=2 SV=1
Length = 247
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ I PSR Q+ ++ARL A+ G LLK+K+DAL RFR I KI+ET+ LM ++M
Sbjct: 3 GKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
REAA +L+ AKF T F+ VIQN+ KAQ+K+R ++N+ GV L +E G D Y++
Sbjct: 63 REAAFSLAEAKF-TAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYEL 121
Query: 124 AGLSTNGHHL 133
GL+ G L
Sbjct: 122 TGLARGGEQL 131
>sp|Q9Y5K8|VATD_HUMAN V-type proton ATPase subunit D OS=Homo sapiens GN=ATP6V1D PE=1 SV=1
Length = 247
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ I PSR Q+ ++ARL A+ G LLK+K+DAL RFR I KI+ET+ LM ++M
Sbjct: 3 GKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
REAA +L+ AKF T F+ VIQN+ KAQ+K+R ++N+ GV L +E G D Y++
Sbjct: 63 REAAFSLAEAKF-TAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYEL 121
Query: 124 AGLSTNGHHL 133
GL+ G L
Sbjct: 122 TGLARGGEQL 131
>sp|P39942|VATD_BOVIN V-type proton ATPase subunit D OS=Bos taurus GN=ATP6V1D PE=1 SV=1
Length = 247
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ I PSR Q+ ++ARL A+ G LLK+K+DAL RFR I KI+ET+ LM ++M
Sbjct: 3 GKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
REAA +L+ AKF T F+ VIQN+ KAQ+K+R ++N+ GV L +E G D Y++
Sbjct: 63 REAAFSLAEAKF-TAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYEL 121
Query: 124 AGLSTNGHHL 133
GL+ G L
Sbjct: 122 TGLARGGEQL 131
>sp|P57746|VATD_MOUSE V-type proton ATPase subunit D OS=Mus musculus GN=Atp6v1d PE=1 SV=1
Length = 247
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ I PSR Q+ ++ARL A+ G LLK+K+DAL RFR I KI+ET+ LM ++M
Sbjct: 3 GKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
REAA +L+ AKF T F+ VIQN+ KAQ+K+R ++N+ GV L +E G D Y++
Sbjct: 63 REAAFSLAEAKF-TAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYEL 121
Query: 124 AGLSTNGHHL 133
GL+ G L
Sbjct: 122 TGLARGGEQL 131
>sp|O97755|VATD_RABIT V-type proton ATPase subunit D OS=Oryctolagus cuniculus GN=ATP6V1D
PE=2 SV=1
Length = 247
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ I PSR Q+ ++ARL A+ G LLK+K+DAL RFR I KI+ET+ LM ++M
Sbjct: 3 GKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
REAA +L+ AKF T F+ IQN+ KAQ+K+R ++N+ GV L +E G D Y++
Sbjct: 63 REAAFSLAEAKF-TAGDFSTTAIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYEL 121
Query: 124 AGLSTNGHHL 133
GL+ G L
Sbjct: 122 TGLARGGEQL 131
>sp|P57747|VATD_SUBDO V-type proton ATPase subunit D OS=Suberites domuncula GN=VATPD PE=2
SV=1
Length = 250
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 87/128 (67%), Gaps = 1/128 (0%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GKD++ + PSR + ++ARL A++GH LLKRKADAL RFR I KI+ET+ LM ++M
Sbjct: 3 GKDRINVFPSRMALTLMKARLKGAQKGHSLLKRKADALTLRFRQILGKIIETKTLMGEVM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQI 123
+EA +L+ AKF F+++V+QN+ KA+++L ++N+ GV L +E +G D Y++
Sbjct: 63 KEATFSLAEAKF-VAGDFSEMVLQNVDKAKIRLHTKKDNVAGVTLPVFETYSDGSDTYEL 121
Query: 124 AGLSTNGH 131
GLS G
Sbjct: 122 TGLSRGGQ 129
>sp|Q86A77|VATD_DICDI V-type proton ATPase subunit D OS=Dictyostelium discoideum
GN=atp6v1d PE=1 SV=1
Length = 257
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
Query: 4 GKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63
GK++L I P+R + ++ +L A GH LLK+K+DAL RFR I IVE + LM M
Sbjct: 3 GKNRLNIFPTRMALTVMKTKLKGAVTGHSLLKKKSDALTIRFRRILANIVENKQLMGTTM 62
Query: 64 REAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENG--PDVY 121
R+A+ +L+ AK+ F+ VI+N+ + +++T EN+ GV L +E + G +
Sbjct: 63 RDASFSLAAAKYAAGE-FSNSVIENVSNPTIAVKMTTENVAGVHLPTFEKISEGVVSNSQ 121
Query: 122 QIAGLSTNGHHLN 134
++ GLS G +N
Sbjct: 122 ELTGLSKGGQQIN 134
>sp|Q9XGM1|VATD_ARATH V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D
PE=1 SV=2
Length = 261
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 74/127 (58%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66
+L ++P+ ++ARLV A RGH LLK+K+DAL +FR++ KIV + M D+M+ +
Sbjct: 7 RLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGDMMKTS 66
Query: 67 AIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQIAGL 126
+ AL+ K+ +V++N+ +A +K+R ENI GV L +++ G + GL
Sbjct: 67 SFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKNDLTGL 126
Query: 127 STNGHHL 133
+ G +
Sbjct: 127 ARGGQQV 133
>sp|O59823|VATD_SCHPO V-type proton ATPase subunit D OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vma8 PE=1 SV=1
Length = 285
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 5 KDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMR 64
K + + P+R + ++ RL A+ GH LLKRK++AL+ RFR I I + + M +M+
Sbjct: 4 KQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGRVMQ 63
Query: 65 EAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEA-VENGPDVYQI 123
AA +++ F N + Q++ + ++++R +ENI GVFL +E ++ D +Q+
Sbjct: 64 IAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDDFQL 123
Query: 124 AGLSTNGHHL 133
GL G +
Sbjct: 124 TGLGKGGQQI 133
>sp|O59941|VATD_NEUCR V-type proton ATPase subunit D OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=vma-8 PE=2 SV=2
Length = 264
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 1 MSDGKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMA 60
MS D+ + P+R + ++A+L A+ GH LLKRK++AL RFR I +I E + M
Sbjct: 1 MSGAADREAVFPTRQSLGIMKAKLKGAETGHSLLKRKSEALTKRFREITRRIDEAKRKMG 60
Query: 61 DIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVE-NGPD 119
+M+ A+++L+ + + ++ A+ ++R +EN+ GV L +EA + G D
Sbjct: 61 RVMQIASLSLAEVTYAVGGNIGYQIQESAKSARFRIRAKQENVSGVLLPAFEAYQAEGND 120
Query: 120 VYQIAGLSTNGHHL 133
+ + GL G +
Sbjct: 121 DFAMTGLGKGGQQV 134
>sp|P87220|VATD_CANAL V-type proton ATPase subunit D OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=VMA8 PE=3 SV=1
Length = 267
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 1 MSDGKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMA 60
MS ++ + P+R ++++L A++GH LLKRK++AL RFR I +I + + M
Sbjct: 1 MSGAGNREQVFPTRMTLGVMKSKLKGAQQGHSLLKRKSEALTKRFRDITQRIDDAKRKMG 60
Query: 61 DIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEA-VENGPD 119
+M+ AA +L+ ++ T + V +++ KA+ ++ +EN+ GVFL +++ + +
Sbjct: 61 RVMQTAAFSLAEVQYATGDNISYQVQESVQKARFTVKAKQENVSGVFLPTFDSHINEDVN 120
Query: 120 VYQIAGLSTNGHHL 133
+++ L+ G +
Sbjct: 121 DFKLTALARGGQQV 134
>sp|P32610|VATD_YEAST V-type proton ATPase subunit D OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=VMA8 PE=1 SV=1
Length = 256
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 10 ILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIA 69
+ P+R ++ +L A +G+ LLKRK++AL RFR I +I + + M +M+ AA +
Sbjct: 8 VFPTRMTLGLMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGRVMQTAAFS 67
Query: 70 LSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDV--YQIAGLS 127
L+ + T V +++ A+ K+R +EN+ GV+L+++E+ + P++ +++ GL
Sbjct: 68 LAEVSYATGENIGYQVQESVSTARFKVRARQENVSGVYLSQFESYID-PEINDFRLTGLG 126
Query: 128 TNGHHL 133
G +
Sbjct: 127 RGGQQV 132
>sp|B0K5I8|VATD_THEPX V-type ATP synthase subunit D OS=Thermoanaerobacter sp. (strain
X514) GN=atpD PE=3 SV=1
Length = 209
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Query: 12 PSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMRE-----A 66
P+R ++++ RLV+AKRGH LLK K D L +F + + + R L ++ E
Sbjct: 8 PTRMELTSLKKRLVTAKRGHKLLKDKQDELVKKFLDM---VKQNRALREEVEAELIGAFK 64
Query: 67 AIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAV-ENGPDVY 121
+ ++R++ N V ++I + A++ + + +ENI V + + E + E ++Y
Sbjct: 65 SFTMARSQMSANVVEESLMIPS---AKVSINVKKENIMSVNVPKLEILQEESKNLY 117
>sp|B0K8E6|VATD_THEP3 V-type ATP synthase subunit D OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=atpD PE=3
SV=1
Length = 209
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Query: 12 PSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMRE-----A 66
P+R ++++ RLV+AKRGH LLK K D L +F + + + R L ++ E
Sbjct: 8 PTRMELTSLKKRLVTAKRGHKLLKDKQDELVKKFLDM---VKQNRALREEVEAELIGAFK 64
Query: 67 AIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAV-ENGPDVY 121
+ ++R++ N V ++I + A++ + + +ENI V + + E + E ++Y
Sbjct: 65 SFTMARSQMSANVVEESLMIPS---AKVSINVKKENIMSVNVPKLEILQEESKNLY 117
>sp|Q9UXU9|VATD_PYRAB V-type ATP synthase subunit D OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=atpD PE=3 SV=1
Length = 214
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAA 67
L I P+R ++ R+ A+RGH LLK K DAL F +I+ + + R + M EA
Sbjct: 5 LKIKPTRMELLKLKRRVKLAERGHKLLKEKQDALIMEFFTIYDEALSLRRELIKKMEEAF 64
Query: 68 IALSRAKFETNAV-FNQIVIQNIGKAQMKLRLTRENIGGV 106
AL RA+ + ++ +I I ++++R TR NI GV
Sbjct: 65 EALRRAQVDVGSLRLKEISIGVKPNEEIEIR-TR-NIMGV 102
>sp|Q834X7|VATD_ENTFA V-type ATP synthase subunit D OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=atpD PE=3 SV=1
Length = 211
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66
+L + P+R S ++ +L +A RGH LLK K D L RF ++ + E L + +E
Sbjct: 3 RLNVNPTRMELSRLKKQLTTATRGHKLLKDKQDELMRRFIAL---VKENNELRIQVEQEV 59
Query: 67 AIALSRAKFETNAVFNQIVIQN---IGKAQMKLRLTRENIGGV----FLTEY-EAVENGP 118
ALS NA N+ I+ I +++L + +NI V + +Y E+V+ P
Sbjct: 60 TDALSNFVL-ANATLNEAFIEELVAIPAEKVELEIIEQNILSVPVPKMIFDYDESVQEAP 118
Query: 119 DVY 121
Y
Sbjct: 119 LDY 121
>sp|Q5JIR1|VATD_PYRKO V-type ATP synthase subunit D OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=atpD PE=3 SV=1
Length = 214
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAA 67
L + P+R ++ R+ AK+GH LLK K DAL F +I+ + + R + + M EA
Sbjct: 5 LNVKPTRMELLNLKRRITLAKKGHKLLKDKQDALVMEFFTIYDEALRLREELNEKMMEAF 64
Query: 68 IALSRAKFET 77
AL RA+ +
Sbjct: 65 KALQRAEIDV 74
>sp|O57731|VATD_PYRHO V-type ATP synthase subunit D OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=atpD PE=3 SV=1
Length = 214
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAA 67
L I P+R ++ R+ A+RGH LLK K DAL F +I+ + + R + M EA
Sbjct: 5 LKIKPTRMELLKLKRRVKLAERGHKLLKEKQDALIMEFFTIYDEALSLRRELIRKMEEAF 64
Query: 68 IALSRAKFETNAV 80
+L RA+ + A+
Sbjct: 65 NSLRRAQVDVGAL 77
>sp|Q8RI80|VATD_FUSNN V-type ATP synthase subunit D OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=atpD PE=3 SV=1
Length = 211
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMRE 65
KL + P+R S ++ RLV+A+RGH LLK K D L +F ++ I E + L ++ +E
Sbjct: 3 KLKVNPTRMALSELKKRLVTARRGHKLLKDKQDELMRQFINL---IKENKKLRVEVEKE 58
>sp|A0PZC8|VATD_CLONN V-type ATP synthase subunit D OS=Clostridium novyi (strain NT)
GN=atpD PE=3 SV=1
Length = 216
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF-----------RSIHCKI--- 52
+L + P+R + ++ RL +A RGH LLK K D L RF + + I
Sbjct: 3 RLNVNPTRMELTRLKKRLTTATRGHKLLKDKQDELMRRFIDLVKYNNELRKDVEEMIKNS 62
Query: 53 ----VETRYLMADIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVF 107
V R LM+ + E AI + K + I+ N+ + + K RL ++ G ++
Sbjct: 63 LKDFVMARALMSSEILEEAIMYPKEKISLDVNIKNIMSVNVPEMKFK-RLLEDDNGSIY 120
>sp|C1CES0|VATD_STRZJ V-type ATP synthase subunit D OS=Streptococcus pneumoniae (strain
JJA) GN=atpD PE=3 SV=1
Length = 203
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSI 48
+L + P+R + ++ RL +A+RGH LLK K D L RF S+
Sbjct: 3 RLNVKPTRMELNNLKERLTTAERGHKLLKDKRDELMRRFISL 44
>sp|Q97QB0|VATD_STRPN V-type ATP synthase subunit D OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=atpD PE=3
SV=1
Length = 203
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSI 48
+L + P+R + ++ RL +A+RGH LLK K D L RF S+
Sbjct: 3 RLNVKPTRMELNNLKERLTTAERGHKLLKDKRDELMRRFISL 44
>sp|B8ZK29|VATD_STRPJ V-type ATP synthase subunit D OS=Streptococcus pneumoniae (strain
ATCC 700669 / Spain 23F-1) GN=atpD PE=3 SV=1
Length = 203
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSI 48
+L + P+R + ++ RL +A+RGH LLK K D L RF S+
Sbjct: 3 RLNVKPTRMELNNLKERLTTAERGHKLLKDKRDELMRRFISL 44
>sp|B5E550|VATD_STRP4 V-type ATP synthase subunit D OS=Streptococcus pneumoniae
serotype 19F (strain G54) GN=atpD PE=3 SV=1
Length = 203
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSI 48
+L + P+R + ++ RL +A+RGH LLK K D L RF S+
Sbjct: 3 RLNVKPTRMELNNLKERLTTAERGHKLLKDKRDELMRRFISL 44
>sp|B1KXT4|VATD_CLOBM V-type ATP synthase subunit D OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=atpD PE=3 SV=1
Length = 216
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
KL + P+R + ++ RL +A RGH LLK K D L RF
Sbjct: 2 KLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRF 40
>sp|A7GGL2|VATD_CLOBL V-type ATP synthase subunit D OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=atpD PE=3 SV=1
Length = 216
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
KL + P+R + ++ RL +A RGH LLK K D L RF
Sbjct: 2 KLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRF 40
>sp|B1IJM6|VATD_CLOBK V-type ATP synthase subunit D OS=Clostridium botulinum (strain
Okra / Type B1) GN=atpD PE=3 SV=1
Length = 216
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
KL + P+R + ++ RL +A RGH LLK K D L RF
Sbjct: 2 KLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRF 40
>sp|C3L1A9|VATD_CLOB6 V-type ATP synthase subunit D OS=Clostridium botulinum (strain
657 / Type Ba4) GN=atpD PE=3 SV=1
Length = 216
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
KL + P+R + ++ RL +A RGH LLK K D L RF
Sbjct: 2 KLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRF 40
>sp|C1FTN5|VATD_CLOBJ V-type ATP synthase subunit D OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=atpD PE=3 SV=1
Length = 216
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
KL + P+R + ++ RL +A RGH LLK K D L RF
Sbjct: 2 KLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRF 40
>sp|A7FWQ5|VATD_CLOB1 V-type ATP synthase subunit D OS=Clostridium botulinum (strain
ATCC 19397 / Type A) GN=atpD PE=3 SV=1
Length = 216
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
KL + P+R + ++ RL +A RGH LLK K D L RF
Sbjct: 2 KLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRF 40
>sp|Q8U4A4|VATD_PYRFU V-type ATP synthase subunit D OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=atpD PE=3 SV=1
Length = 214
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAA 67
L + P+R ++ R+ A+RGH LLK K DAL F +I+ + + R + + EA
Sbjct: 5 LKVKPTRMELLKLKRRVKLAERGHKLLKEKQDALIMEFFTIYDEALSMRRELIKKIGEAF 64
Query: 68 IALSRAKFETNAV-FNQIVIQNIGKAQMKLRLTRENIGGVF--LTEYEAVENGPDVYQIA 124
AL A+ E +V +I I ++++R NI GV L E ++ P A
Sbjct: 65 EALRLAQVEVGSVRLKEIAIGVNPNKEIEVR--SRNIMGVRVPLIEVPELKRKPSERGYA 122
Query: 125 GLSTNG 130
+ST+
Sbjct: 123 FISTSS 128
>sp|B2IP45|VATD_STRPS V-type ATP synthase subunit D OS=Streptococcus pneumoniae (strain
CGSP14) GN=atpD PE=3 SV=1
Length = 203
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSI 48
+L + P+R + ++ RL +A+RGH LLK K D L RF S+
Sbjct: 3 RLNVKPTRMELNNLKERLKTAERGHKLLKDKRDELMRRFISL 44
>sp|B1ICC7|VATD_STRPI V-type ATP synthase subunit D OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=atpD PE=3 SV=1
Length = 203
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSI 48
+L + P+R + ++ RL +A+RGH LLK K D L RF S+
Sbjct: 3 RLNVKPTRMELNNLKERLKTAERGHKLLKDKRDELMRRFISL 44
>sp|B5XJH5|VATD_STRPZ V-type ATP synthase subunit D OS=Streptococcus pyogenes serotype
M49 (strain NZ131) GN=atpD PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R S ++ RL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELSNLKNRLKTATRGHKLLKDKRDELMRRF 41
>sp|Q8P2U4|VATD_STRP8 V-type ATP synthase subunit D OS=Streptococcus pyogenes serotype
M18 (strain MGAS8232) GN=atpD PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R S ++ RL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELSNLKNRLKTATRGHKLLKDKRDELMRRF 41
>sp|Q5XE48|VATD_STRP6 V-type ATP synthase subunit D OS=Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394) GN=atpD PE=3 SV=2
Length = 208
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R S ++ RL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELSNLKNRLKTATRGHKLLKDKRDELMRRF 41
>sp|O06506|VATD_DESSY V-type ATP synthase subunit D OS=Desulfurococcus sp. (strain SY)
GN=atpD PE=3 SV=1
Length = 214
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAA 67
L + P+R ++ R+ AK+GH LLK K DAL F +I+ + ++ R + M+EA
Sbjct: 5 LNVKPTRMELLNLKRRIQLAKKGHKLLKDKQDALVMEFFTIYDEALQLRRELNLKMKEAF 64
Query: 68 IALSRAKFET 77
AL A+ +
Sbjct: 65 EALQMAEIDV 74
>sp|Q9A1Q1|VATD_STRP1 V-type ATP synthase subunit D OS=Streptococcus pyogenes serotype
M1 GN=atpD PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R S ++ RL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELSNLKNRLKTATRGHKLLKDKRDELMRRF 41
>sp|P0DA01|VATD_STRPQ V-type ATP synthase subunit D OS=Streptococcus pyogenes serotype
M3 (strain SSI-1) GN=atpD PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R S ++ RL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELSNLKNRLKTATRGHKLLKDKRDELMRRF 41
>sp|A2RC99|VATD_STRPG V-type ATP synthase subunit D OS=Streptococcus pyogenes serotype
M5 (strain Manfredo) GN=atpD PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R S ++ RL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELSNLKNRLKTATRGHKLLKDKRDELMRRF 41
>sp|P0DA00|VATD_STRP3 V-type ATP synthase subunit D OS=Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315) GN=atpD PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R S ++ RL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELSNLKNRLKTATRGHKLLKDKRDELMRRF 41
>sp|A3CK50|VATD_STRSV V-type ATP synthase subunit D OS=Streptococcus sanguinis (strain
SK36) GN=atpD PE=3 SV=1
Length = 207
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R + ++ARL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELNNLKARLKTAVRGHKLLKDKRDELMRRF 41
>sp|A8AUJ9|VATD_STRGC V-type ATP synthase subunit D OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=atpD PE=3
SV=1
Length = 207
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRF 45
+L + P+R + ++ARL +A RGH LLK K D L RF
Sbjct: 3 RLNVKPTRMELNNLKARLKTAVRGHKLLKDKRDELMRRF 41
>sp|C5A338|VATD_THEGJ V-type ATP synthase subunit D OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=atpD PE=3 SV=1
Length = 214
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAA 67
L + P+R ++ R+ AK+GH LLK K DAL F +I+ + ++ R + + M A
Sbjct: 5 LNVKPTRMELLNLKRRIQLAKKGHKLLKDKQDALIMEFFTIYDEALQLRRELNEKMGVAF 64
Query: 68 IALSRAKFE 76
L+RA+ E
Sbjct: 65 ETLTRAQIE 73
>sp|B6YV16|VATD_THEON V-type ATP synthase subunit D OS=Thermococcus onnurineus (strain
NA1) GN=atpD PE=3 SV=1
Length = 212
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAA 67
L + P+R ++ R+ AK+GH LLK K DAL F +I+ + + R + M EA
Sbjct: 5 LNVKPTRMELLNLKRRIKLAKKGHKLLKDKQDALIMEFFTIYDEALSLREELGRKMEEAF 64
Query: 68 IALSRAKFET 77
AL A+ +
Sbjct: 65 KALQMAEIDV 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,153,960
Number of Sequences: 539616
Number of extensions: 1446293
Number of successful extensions: 3104
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3012
Number of HSP's gapped (non-prelim): 89
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)