Query psy7193
Match_columns 136
No_of_seqs 101 out of 485
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:33:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1647|consensus 100.0 7.7E-38 1.7E-42 239.8 11.0 134 1-136 1-134 (255)
2 COG1394 NtpD Archaeal/vacuolar 100.0 3.7E-30 7.9E-35 198.3 14.3 116 8-124 3-118 (211)
3 PRK00373 V-type ATP synthase s 100.0 1.2E-29 2.5E-34 195.2 16.1 120 7-127 3-125 (204)
4 TIGR00309 V_ATPase_subD H(+)-t 100.0 1.2E-29 2.5E-34 195.9 15.2 126 9-134 3-129 (209)
5 PRK02195 V-type ATP synthase s 100.0 1.4E-27 3E-32 183.5 14.7 112 9-127 4-115 (201)
6 PF01813 ATP-synt_D: ATP synth 99.9 7.2E-26 1.6E-30 172.9 14.3 112 15-127 1-116 (196)
7 PF08580 KAR9: Yeast cortical 70.4 10 0.00022 34.4 5.5 57 9-66 216-272 (683)
8 KOG1962|consensus 69.8 22 0.00047 27.9 6.5 46 15-60 165-210 (216)
9 PF13851 GAS: Growth-arrest sp 65.4 60 0.0013 24.9 9.0 53 14-66 85-137 (201)
10 PF03670 UPF0184: Uncharacteri 52.6 68 0.0015 21.4 6.8 54 13-66 24-77 (83)
11 TIGR02389 RNA_pol_rpoA2 DNA-di 51.4 25 0.00054 29.7 4.1 66 41-106 6-72 (367)
12 TIGR03545 conserved hypothetic 45.7 1.7E+02 0.0037 26.0 8.7 56 11-66 187-249 (555)
13 KOG4196|consensus 45.7 1.2E+02 0.0025 22.1 9.3 50 13-62 45-107 (135)
14 PF11285 DUF3086: Protein of u 45.3 58 0.0013 26.4 5.1 45 28-72 3-47 (283)
15 PRK14897 unknown domain/DNA-di 42.8 29 0.00062 30.6 3.3 66 41-106 145-210 (509)
16 PF15136 UPF0449: Uncharacteri 42.0 1.1E+02 0.0024 21.0 5.5 29 17-48 62-90 (97)
17 TIGR00634 recN DNA repair prot 40.9 2.5E+02 0.0055 24.6 12.0 29 104-132 417-446 (563)
18 PTZ00454 26S protease regulato 39.3 2E+02 0.0044 24.3 7.9 51 12-62 12-62 (398)
19 PF11598 COMP: Cartilage oligo 38.2 86 0.0019 18.5 5.2 31 39-69 4-34 (45)
20 PF07794 DUF1633: Protein of u 37.0 1.9E+02 0.0042 26.0 7.4 47 15-61 604-650 (790)
21 KOG0999|consensus 32.8 3.9E+02 0.0084 24.4 9.0 61 21-82 29-91 (772)
22 PRK06851 hypothetical protein; 32.8 1.2E+02 0.0025 25.6 5.4 31 48-78 120-150 (367)
23 PF06334 Orthopox_A47: Orthopo 31.4 1.2E+02 0.0027 23.4 4.8 58 9-66 5-76 (244)
24 PF06103 DUF948: Bacterial pro 30.5 1.5E+02 0.0034 19.1 9.2 61 15-75 19-79 (90)
25 PF02183 HALZ: Homeobox associ 30.4 1.2E+02 0.0026 17.7 5.6 35 28-62 4-38 (45)
26 PRK04309 DNA-directed RNA poly 29.7 67 0.0014 27.2 3.5 66 41-106 22-87 (383)
27 PF08606 Prp19: Prp19/Pso4-lik 29.5 1.6E+02 0.0035 19.0 5.2 32 32-63 11-42 (70)
28 KOG4571|consensus 29.0 3.3E+02 0.0071 22.4 8.6 57 12-68 224-280 (294)
29 COG1340 Uncharacterized archae 28.8 3.3E+02 0.0072 22.4 8.6 30 30-59 35-64 (294)
30 PF08687 ASD2: Apx/Shroom doma 28.0 1.9E+02 0.0042 23.3 5.6 58 6-63 56-116 (264)
31 TIGR00293 prefoldin, archaeal 28.0 2E+02 0.0044 19.7 6.5 39 27-65 84-122 (126)
32 PF12777 MT: Microtubule-bindi 27.8 1.6E+02 0.0034 24.2 5.3 47 8-54 214-260 (344)
33 PF11172 DUF2959: Protein of u 27.6 2.2E+02 0.0047 22.2 5.6 43 37-83 22-64 (201)
34 PRK11546 zraP zinc resistance 27.4 2.1E+02 0.0046 21.0 5.3 31 35-65 88-118 (143)
35 KOG2027|consensus 27.3 81 0.0017 26.9 3.5 23 31-53 6-28 (388)
36 PF14584 DUF4446: Protein of u 27.2 2.5E+02 0.0055 20.5 6.2 57 16-72 24-82 (151)
37 PF08649 DASH_Dad1: DASH compl 26.7 1.7E+02 0.0036 18.2 5.4 34 33-66 2-35 (58)
38 PF03398 Ist1: Regulator of Vp 26.1 2.2E+02 0.0048 21.0 5.4 32 21-52 1-32 (165)
39 cd07429 Cby_like Chibby, a nuc 25.7 2.4E+02 0.0052 19.7 5.1 36 12-47 69-104 (108)
40 COG0497 RecN ATPase involved i 25.7 4.9E+02 0.011 23.4 12.0 43 89-131 389-436 (557)
41 cd06528 RNAP_A'' A'' subunit o 24.8 62 0.0014 27.2 2.4 63 44-106 6-68 (363)
42 KOG0976|consensus 24.3 4.7E+02 0.01 25.1 7.9 44 17-60 339-382 (1265)
43 PF15460 SAS4: Something about 24.2 2.4E+02 0.0053 19.3 5.4 31 31-61 65-95 (101)
44 KOG0930|consensus 24.2 2.1E+02 0.0045 23.9 5.2 12 13-24 15-26 (395)
45 PF15254 CCDC14: Coiled-coil d 23.9 5.3E+02 0.011 24.4 8.1 49 18-66 437-485 (861)
46 COG1340 Uncharacterized archae 23.8 4.1E+02 0.009 21.8 7.1 44 33-76 59-102 (294)
47 KOG0860|consensus 23.8 2.5E+02 0.0055 19.9 5.0 45 14-58 28-86 (116)
48 PRK03947 prefoldin subunit alp 23.5 2.7E+02 0.0058 19.5 7.3 40 29-68 94-133 (140)
49 PRK10869 recombination and rep 22.3 5.5E+02 0.012 22.7 11.6 43 90-132 389-436 (553)
50 PF04011 LemA: LemA family; I 22.2 3.3E+02 0.0071 20.1 7.9 56 13-68 21-76 (186)
51 PRK11637 AmiB activator; Provi 21.9 4.8E+02 0.01 21.9 8.6 8 71-78 130-137 (428)
52 smart00503 SynN Syntaxin N-ter 21.9 1.5E+02 0.0032 19.6 3.5 26 37-62 90-115 (117)
53 PF15219 TEX12: Testis-express 21.8 2.1E+02 0.0045 19.6 4.0 29 21-49 67-95 (100)
54 cd00890 Prefoldin Prefoldin is 21.0 2.7E+02 0.006 18.7 5.7 36 31-66 89-124 (129)
No 1
>KOG1647|consensus
Probab=100.00 E-value=7.7e-38 Score=239.84 Aligned_cols=134 Identities=45% Similarity=0.747 Sum_probs=129.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChh
Q psy7193 1 MSDGKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAV 80 (136)
Q Consensus 1 m~~~~~~~~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~ 80 (136)
|| |+||++|+||||+|..+|.|++.|++||.|||+|+|||..+||.+.+++.+.+..++++|++|.|+|++|.+..| +
T Consensus 1 Ms-g~dr~~vFPtRm~~~~MKtrlkgAq~GhsLLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~g-n 78 (255)
T KOG1647|consen 1 MS-GKDRLPVFPTRMNLTLMKTRLKGAQKGHSLLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGG-N 78 (255)
T ss_pred CC-ccccccccchHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C
Confidence 76 589999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHhcccccceeEEEEeeEEeeEEeceEEeeecCCCccccccccccccccccC
Q psy7193 81 FNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQIAGLSTNGHHLNMM 136 (136)
Q Consensus 81 ~~~~~~~~v~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~~gl~~gg~~i~~~ 136 (136)
+...+.+++..+.++|+.+.+||.||.+|.|+.+.++.+.|+++||++|||||++|
T Consensus 79 ~~~~v~q~v~~a~v~vRsk~env~GV~Lp~fe~~~dg~~~~~LtgL~rgGqqv~~~ 134 (255)
T KOG1647|consen 79 FKHQVQQNVKQATVKVRSKKENVSGVKLPTFELYQDGIDAFPLTGLGRGGQQVARL 134 (255)
T ss_pred ccHHHHhhhhhheeeeeeeccccceeeechhhhhcccCccccccccccchHHHHHH
Confidence 99999999889999999999999999999999998888899999999999999976
No 2
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=99.97 E-value=3.7e-30 Score=198.31 Aligned_cols=116 Identities=31% Similarity=0.379 Sum_probs=104.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHh
Q psy7193 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQ 87 (136)
Q Consensus 8 ~~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~ 87 (136)
.+|+||||||+++|+||++|++||+|||+|||+|+++|+++++++.+.+.++++.+++||++++.|....|.+....++.
T Consensus 3 ~~v~PTR~eL~~lk~rLkla~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~~~~ 82 (211)
T COG1394 3 LQVKPTRMELIRLKRRLKLARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEEIAL 82 (211)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999766666665
Q ss_pred cccccceeEEEEeeEEeeEEeceEEeeecCCCccccc
Q psy7193 88 NIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQIA 124 (136)
Q Consensus 88 ~v~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~~ 124 (136)
. .+..++|++..+|||||.||.|+......++|.+.
T Consensus 83 ~-~~~~~~v~~~~~nI~GV~vP~~~~~~~~~~~~~~~ 118 (211)
T COG1394 83 V-QKEKLEVDVDVENIMGVVVPTFELVELTPPPYDLG 118 (211)
T ss_pred C-CCCCceeeeceeeeeeeeeeeeeeeccCCCccccc
Confidence 4 45788999999999999999999886554555443
No 3
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=99.97 E-value=1.2e-29 Score=195.15 Aligned_cols=120 Identities=25% Similarity=0.294 Sum_probs=106.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHH
Q psy7193 7 KLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVI 86 (136)
Q Consensus 7 ~~~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~ 86 (136)
+.+|+|||+||+++|++|++|++||+|||+|||+|+++|+++++++.++++++++.+++||++|+.|.+..|++....++
T Consensus 3 ~~~v~pTr~~L~~lk~~l~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~~~ 82 (204)
T PRK00373 3 RLNVKPTRMELINLKRRLKLAERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEEAA 82 (204)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999965555555
Q ss_pred hcccccceeEEEEeeEEeeEEeceEEee-ec--CCCcccccccc
Q psy7193 87 QNIGKAQMKLRLTRENIGGVFLTEYEAV-EN--GPDVYQIAGLS 127 (136)
Q Consensus 87 ~~v~~~~~~v~~~~~nvmGV~vP~~~~~-~~--~~~~y~~~gl~ 127 (136)
.+ .++..+|++..+|||||+||.|+.. .. ..++|++.+++
T Consensus 83 ~~-~~~~~~v~~~~~ni~GV~vP~~~~~~~~~~~~~~y~~~~t~ 125 (204)
T PRK00373 83 AS-PKESLEVDVSSKNIMGVVVPVIELSVKRTLPERGYGFLGTS 125 (204)
T ss_pred hC-CCCCceEEEEeEEEEEEEeceEEeecccCCccCCcCcccCC
Confidence 54 5777899999999999999999983 32 34568777765
No 4
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=99.97 E-value=1.2e-29 Score=195.86 Aligned_cols=126 Identities=25% Similarity=0.276 Sum_probs=106.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHhc
Q psy7193 9 PILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQN 88 (136)
Q Consensus 9 ~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~ 88 (136)
+|.||||||+++|+||++|++||+|||+|||+|+++|+++++++.++++++++.+++||++++.|.+..|.+....++.+
T Consensus 3 ~v~PTr~~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~ 82 (209)
T TIGR00309 3 KVNPTRMELLKLKDKLKMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAALS 82 (209)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999996555566666
Q ss_pred ccccceeEEEEeeEEeeEEeceEEeeec-CCCccccccccccccccc
Q psy7193 89 IGKAQMKLRLTRENIGGVFLTEYEAVEN-GPDVYQIAGLSTNGHHLN 134 (136)
Q Consensus 89 v~~~~~~v~~~~~nvmGV~vP~~~~~~~-~~~~y~~~gl~~gg~~i~ 134 (136)
++.+.++|+++.+|||||+||.|+..+. ..+.-+..|+.+||+.+.
T Consensus 83 v~~~~~~v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~l~~t~~~~d 129 (209)
T TIGR00309 83 VVTARFEVDMKSKNIMGVVVPVFDSYEIRRKVHERGYGLLFTSYKVD 129 (209)
T ss_pred CCcccceEEEEEEEEeeEEcceeEeeccccCccccCcCcccCCHHHH
Confidence 5558889999999999999999999642 111112234555556554
No 5
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=99.95 E-value=1.4e-27 Score=183.47 Aligned_cols=112 Identities=18% Similarity=0.057 Sum_probs=102.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHhc
Q psy7193 9 PILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQN 88 (136)
Q Consensus 9 ~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~ 88 (136)
+|.|||+||+++|++|++|++||+||++|||+|+++|+++++++.++++++++.+++||.++..|....|.+ +..
T Consensus 4 ~v~pTK~eL~~lk~~L~~a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~-----~~~ 78 (201)
T PRK02195 4 KIKLTKNSLKKQKKQLKMLERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFD-----EDL 78 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----hhc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999953 222
Q ss_pred ccccceeEEEEeeEEeeEEeceEEeeecCCCcccccccc
Q psy7193 89 IGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQIAGLS 127 (136)
Q Consensus 89 v~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~~gl~ 127 (136)
.+ ...|.++.+|||||+||.|+.......+|++.|++
T Consensus 79 -~~-~~~v~~~~~nimGV~vP~~~~~~~~~~~Y~~~~t~ 115 (201)
T PRK02195 79 -IK-VKKVEKDYENIAGVEVPILDSIEFEIIEYSLLNTP 115 (201)
T ss_pred -CC-cceEEEeeeeEeeeeeceeeeeecCCCCcCCccCC
Confidence 34 66999999999999999999977666679998865
No 6
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=99.94 E-value=7.2e-26 Score=172.88 Aligned_cols=112 Identities=29% Similarity=0.377 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHhcccccce
Q psy7193 15 GNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQNIGKAQM 94 (136)
Q Consensus 15 ~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~v~~~~~ 94 (136)
|||+++|+|+++|++||+|||+|||+|+.+|+++++++.+.++++++.+++||++|..|.+..|.+....++.++ +...
T Consensus 1 m~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~-~~~~ 79 (196)
T PF01813_consen 1 MELIRLKRRLKLAKRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSSVAESV-PESV 79 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHTS--S---
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHhcC-CCCc
Confidence 799999999999999999999999999999999999999999999999999999999999998988888888764 4478
Q ss_pred eEEEEeeEEeeEEeceEEeeec----CCCcccccccc
Q psy7193 95 KLRLTRENIGGVFLTEYEAVEN----GPDVYQIAGLS 127 (136)
Q Consensus 95 ~v~~~~~nvmGV~vP~~~~~~~----~~~~y~~~gl~ 127 (136)
+|++..+|||||++|.|+.... ..++|++.+++
T Consensus 80 ~v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~~~~~~ 116 (196)
T PF01813_consen 80 EVEVKERNIMGVRVPVLEVKEVRRPFPSPPYGLLGTP 116 (196)
T ss_dssp EEEEEEEEETTEEEEEEEEE--GGTTS------TT--
T ss_pred EEEEEEEEEEEEEeceEEeeecccccccccCCcccCC
Confidence 9999999999999999999882 34456555443
No 7
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=70.44 E-value=10 Score=34.45 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 9 PILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66 (136)
Q Consensus 9 ~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A 66 (136)
++.|.|++--.-++ ...-..-.+.|.+|+..|..++..+.+++..+|+++.+.==..
T Consensus 216 dfLP~Ri~~F~~ra-~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~ 272 (683)
T PF08580_consen 216 DFLPMRIEEFQSRA-ESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNI 272 (683)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 35566666555555 4445556788999999999999999999999998887653333
No 8
>KOG1962|consensus
Probab=69.77 E-value=22 Score=27.92 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 15 GNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 15 ~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
.+|-.....|..|+.=..-|++..|.+..|+..+.++...++++++
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 4555566667777777777777777788888888777777777664
No 9
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.39 E-value=60 Score=24.86 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 14 RGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66 (136)
Q Consensus 14 R~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A 66 (136)
+..|..+|.++...++-.+=|++--++|-.+|..+..+..+++..+...+.+.
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888777777777777666666
No 10
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=52.58 E-value=68 Score=21.44 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 13 SRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66 (136)
Q Consensus 13 TR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A 66 (136)
.-.+.-.+-..|-------+-|++|-|-|--++++++..-++.|.++.+...+|
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~~ 77 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSKA 77 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 346777888888888888999999999999999999999999999988766543
No 11
>TIGR02389 RNA_pol_rpoA2 DNA-directed RNA polymerase, subunit A''. This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein.
Probab=51.36 E-value=25 Score=29.67 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcchhcChhHHHHHHhcccccceeEEEEeeEEeeE
Q psy7193 41 LQFRFRSIHCKIVETRY-LMADIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGV 106 (136)
Q Consensus 41 Li~~f~~l~~~~~~~~~-~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~v~~~~~~v~~~~~nvmGV 106 (136)
|..|+.+.+.+.+-.++ .++..+++....+.+|...-|+......++|+..|.+...+.+=..+||
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~~~~l~~i~~ky~~alv~PGeaVG~IAAQSIGEP~TQMTLnTFH~AGV 72 (367)
T TIGR02389 6 LLKELEETVKKREISDKEELDEIIKRVEEEYLRSLIDPGEAVGIVAAQSIGEPGTQMTMRTFHYAGV 72 (367)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCccccchhhhhhcCCccccccccccccccc
Confidence 44455555555544555 7777788888888899999997777888889888888888888888887
No 12
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.72 E-value=1.7e+02 Score=26.03 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHHH--H---HhHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 11 LPSRGNQSAIEARLVSAKRG--H---GLLK--RKADALQFRFRSIHCKIVETRYLMADIMREA 66 (136)
Q Consensus 11 ~PTR~~L~~lK~rl~~A~rG--~---~LLk--~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A 66 (136)
.|.+-++-.+|+|+.-.+.| . ++.+ +.-|.|..++......++.++.++...-+..
T Consensus 187 Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~ 249 (555)
T TIGR03545 187 LPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQL 249 (555)
T ss_pred cCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 58899999999999999887 4 3333 3456677777776666666666666555444
No 13
>KOG4196|consensus
Probab=45.72 E-value=1.2e+02 Score=22.13 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHHH-HHH------------HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 13 SRGNQSAIEARLVSAK-RGH------------GLLKRKADALQFRFRSIHCKIVETRYLMADI 62 (136)
Q Consensus 13 TR~~L~~lK~rl~~A~-rG~------------~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~ 62 (136)
+|.|.+++|+|-...+ ||| .=|+.+..-|..++..+..+..+++.+++.-
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999998776554 565 3478888889999998888888888877543
No 14
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=45.26 E-value=58 Score=26.41 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 28 KRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSR 72 (136)
Q Consensus 28 ~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~ 72 (136)
+-|.+-|+.++++|..++.++-.+-.+++.+|...|.-....++.
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~ 47 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAI 47 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHH
Confidence 456778999999999999999888888888888888777666654
No 15
>PRK14897 unknown domain/DNA-directed RNA polymerase subunit A'' fusion protein; Provisional
Probab=42.84 E-value=29 Score=30.63 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHhcccccceeEEEEeeEEeeE
Q psy7193 41 LQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGV 106 (136)
Q Consensus 41 Li~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~v~~~~~~v~~~~~nvmGV 106 (136)
+..++...+++.+-..+.++..+.+....+..+....|+......++|+..|.+...+.+=..+||
T Consensus 145 ~~~el~~~~~~~~l~~~~~~~i~~ei~~~y~~~~v~pGE~VG~IAAQSIGEP~TQMTLnTFH~AGV 210 (509)
T PRK14897 145 VIEEIAKAMKKKELSDDEYEEILRRIREEYERARVDPYEAVGIVAAQSIGEPGTQMTMRTFHYAGV 210 (509)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhCCccccccccccccccc
Confidence 445566666666667778888888999999999999997777888889888888888888888888
No 16
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=42.02 E-value=1.1e+02 Score=20.98 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q psy7193 17 QSAIEARLVSAKRGHGLLKRKADALQFRFRSI 48 (136)
Q Consensus 17 L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l 48 (136)
.+.+..||+-|. ..|++|++.|-..-.++
T Consensus 62 Yv~~NerLqqa~---~~Lkkk~e~L~~age~L 90 (97)
T PF15136_consen 62 YVAMNERLQQAR---DQLKKKCEELRQAGEEL 90 (97)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456777777666 77888887776554444
No 17
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.90 E-value=2.5e+02 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=18.2
Q ss_pred eeEEeceEEeeec-CCCccccccccccccc
Q psy7193 104 GGVFLTEYEAVEN-GPDVYQIAGLSTNGHH 132 (136)
Q Consensus 104 mGV~vP~~~~~~~-~~~~y~~~gl~~gg~~ 132 (136)
.|+.--.|....+ +.+..++....+||+.
T Consensus 417 ~G~d~v~f~~~~n~g~~~~pl~~~lSgGe~ 446 (563)
T TIGR00634 417 YGADQVEFLFSANTGEPVKPLAKVASGGEL 446 (563)
T ss_pred CCceEEEEEEecCCCCCCCChhhhcCHhHH
Confidence 4666666666553 5555666666777764
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=39.28 E-value=2e+02 Score=24.25 Aligned_cols=51 Identities=6% Similarity=0.171 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 12 PSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADI 62 (136)
Q Consensus 12 PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~ 62 (136)
-|+|....+..++.-.++-++.|+.+-..|..+...+-+++..++++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 12 STTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888877888888888888877777777777777766554
No 19
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=38.16 E-value=86 Score=18.48 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 39 DALQFRFRSIHCKIVETRYLMADIMREAAIA 69 (136)
Q Consensus 39 daLi~~f~~l~~~~~~~~~~~~~~~~~A~~~ 69 (136)
..|+..+.++..-+.++|+.+.+-.++..|.
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE~~~L 34 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKETRFL 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777788888888888888877553
No 20
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=37.00 E-value=1.9e+02 Score=25.96 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 15 GNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMAD 61 (136)
Q Consensus 15 ~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~ 61 (136)
||.--++..++.+++--.=|+.||+.|-.+.+++..-.+..++.+-+
T Consensus 604 ~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhd 650 (790)
T PF07794_consen 604 MEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHD 650 (790)
T ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 55556788899999988999999999999999998666555554433
No 21
>KOG0999|consensus
Probab=32.81 E-value=3.9e+02 Score=24.42 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcchhcChhHH
Q psy7193 21 EARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA--AIALSRAKFETNAVFN 82 (136)
Q Consensus 21 K~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A--~~~l~~A~~~~G~~~~ 82 (136)
...++.|.-|..||+.|.| |-..|..+-.++..+|.+++..=+.. |++--.--...|+.-.
T Consensus 29 ~e~~qaAeyGL~lLeeK~~-Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 29 EEKIQAAEYGLELLEEKED-LKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 4567899999999999976 77888888888888887776543222 4444444444664433
No 22
>PRK06851 hypothetical protein; Provisional
Probab=32.76 E-value=1.2e+02 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchhcC
Q psy7193 48 IHCKIVETRYLMADIMREAAIALSRAKFETN 78 (136)
Q Consensus 48 l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G 78 (136)
-.+++.++..+..+.+++||..|+.|.....
T Consensus 120 ~k~eI~~~~~~~~~~~~~Ay~~l~~A~~ihd 150 (367)
T PRK06851 120 HKEEILKINEEISRCFQRAYEYLNEALAIHD 150 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666677777777777777765443
No 23
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=31.35 E-value=1.2e+02 Score=23.37 Aligned_cols=58 Identities=29% Similarity=0.434 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHH--HHHHHHHHHHH---HhHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q psy7193 9 PILPSRGNQSAI--EARLVSAKRGH---GLLKRKADALQFRFRSIH---------CKIVETRYLMADIMREA 66 (136)
Q Consensus 9 ~V~PTR~~L~~l--K~rl~~A~rG~---~LLk~KrdaLi~~f~~l~---------~~~~~~~~~~~~~~~~A 66 (136)
++.|++.|-+.+ |.+...-+||- .-+..|..|++.+|.++. +++.|+++++-+..++|
T Consensus 5 nikpskenrlsilskdkmdsfkrgswatssfreksra~~~R~~S~RR~~IK~~~~~K~iELKr~I~E~I~Ks 76 (244)
T PF06334_consen 5 NIKPSKENRLSILSKDKMDSFKRGSWATSSFREKSRATFQRFFSFRRMHIKPSHYSKFIELKREIFEIIQKS 76 (244)
T ss_pred CCCcccccceeeeehhhhhhhhcCccchhhHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Confidence 688888876543 67777778874 678899999999999876 34566666666666665
No 24
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.47 E-value=1.5e+02 Score=19.11 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q psy7193 15 GNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKF 75 (136)
Q Consensus 15 ~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~ 75 (136)
+-|.++++-+.-..+--+-+++.-|.+..+..+++.+.+++-+.+++..+..-.....+.-
T Consensus 19 ~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 19 KVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVAD 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3467788888888888889999999999999999999999998888888777655555444
No 25
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.35 E-value=1.2e+02 Score=17.71 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 28 KRGHGLLKRKADALQFRFRSIHCKIVETRYLMADI 62 (136)
Q Consensus 28 ~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~ 62 (136)
++=|+.|+.-=|.|..++..+.++-..++.++...
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888877777777666543
No 26
>PRK04309 DNA-directed RNA polymerase subunit A''; Validated
Probab=29.75 E-value=67 Score=27.24 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHhcccccceeEEEEeeEEeeE
Q psy7193 41 LQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGV 106 (136)
Q Consensus 41 Li~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~v~~~~~~v~~~~~nvmGV 106 (136)
+..++.+-+.+.+-.++.+...+++....+..+....|+......++++..|.....+.+=..+||
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~y~~~~v~pGe~VG~iaAQsIGEP~TQMTL~TFH~AGv 87 (383)
T PRK04309 22 LKEELREKLEERKLTEEEVEEIIEEVVREYLRSLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGV 87 (383)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhhccchhhhcccccccccCc
Confidence 566666666666667778888888888889999998997677778888888877777777777887
No 27
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=29.52 E-value=1.6e+02 Score=19.02 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=27.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 32 GLLKRKADALQFRFRSIHCKIVETRYLMADIM 63 (136)
Q Consensus 32 ~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~ 63 (136)
+.|..-=|+++.|-+.+.+++...+.++...+
T Consensus 11 ~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aL 42 (70)
T PF08606_consen 11 STLQNEWDALMLENFTLRKQLDQTRQELSHAL 42 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667779999999999999999999988765
No 28
>KOG4571|consensus
Probab=29.04 E-value=3.3e+02 Score=22.43 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 12 PSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAI 68 (136)
Q Consensus 12 PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~ 68 (136)
||+..--..-++...|-|-++==+.++++|.-+...+-++-.++|+.+.+..++..+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333344556788887778888999999999999999999999998888743
No 29
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.78 E-value=3.3e+02 Score=22.39 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=13.9
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 30 GHGLLKRKADALQFRFRSIHCKIVETRYLM 59 (136)
Q Consensus 30 G~~LLk~KrdaLi~~f~~l~~~~~~~~~~~ 59 (136)
=-+-+..|||.|..+.+.+..++.+++...
T Consensus 35 ~~~~~~ekRdeln~kvrE~~e~~~elr~~r 64 (294)
T COG1340 35 EASELAEKRDELNAKVRELREKAQELREER 64 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444444433333
No 30
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=28.00 E-value=1.9e+02 Score=23.34 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=25.1
Q ss_pred CCCCCCCCHHHHHHHHHHHH---HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 6 DKLPILPSRGNQSAIEARLV---SAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63 (136)
Q Consensus 6 ~~~~V~PTR~~L~~lK~rl~---~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~ 63 (136)
..+++.|++.+++.--.... .-....+-+..|...|+..+...+....+.++.+.+.+
T Consensus 56 ~~~~~s~~kaell~~~~~~~~~~~~~e~~~~l~~Kk~eLi~~l~~kl~~L~~eqe~l~ee~ 116 (264)
T PF08687_consen 56 SYYSTSAAKAELLNKMKDMQESDSDDENDNDLNAKKVELIESLSKKLEVLQEEQEALQEEI 116 (264)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccchhccCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777554333332 23334467788899999988888777777777777666
No 31
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.96 E-value=2e+02 Score=19.66 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 27 AKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMRE 65 (136)
Q Consensus 27 A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~ 65 (136)
.....+.|++|.+.|-..+..+-+.+.++++.+......
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888888888888887776544
No 32
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.81 E-value=1.6e+02 Score=24.20 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q psy7193 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVE 54 (136)
Q Consensus 8 ~~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~ 54 (136)
..|.|.|..|-.+.+.+..++.-..-.+.+.+.+-.++..+..++.+
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889888888777777777666666666655555555555544443
No 33
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.60 E-value=2.2e+02 Score=22.16 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHH
Q psy7193 37 KADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQ 83 (136)
Q Consensus 37 KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~ 83 (136)
|||+|+-+. +++.+.+++-.+.|..|...+....-..|.++..
T Consensus 22 KRdilvdrV----e~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~ 64 (201)
T PF11172_consen 22 KRDILVDRV----EDARDSQQEAQEQFKSALEQFKSLVNFDGGDLED 64 (201)
T ss_pred hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHH
Confidence 999977554 5667777777777777766666555445546653
No 34
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.39 E-value=2.1e+02 Score=20.96 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 35 KRKADALQFRFRSIHCKIVETRYLMADIMRE 65 (136)
Q Consensus 35 k~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~ 65 (136)
..|-.+|..|+.++-.++.+.+-+++..+++
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544
No 35
>KOG2027|consensus
Probab=27.28 E-value=81 Score=26.89 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=18.6
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHH
Q psy7193 31 HGLLKRKADALQFRFRSIHCKIV 53 (136)
Q Consensus 31 ~~LLk~KrdaLi~~f~~l~~~~~ 53 (136)
-+||+.|++++++..+.-+.++.
T Consensus 6 l~lLknKk~a~~kq~RrdIA~lL 28 (388)
T KOG2027|consen 6 LKLLKNKKEALAKQLRRDIADLL 28 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999987765554
No 36
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.20 E-value=2.5e+02 Score=20.54 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHh--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 16 NQSAIEARLVSAKRGHGL--LKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSR 72 (136)
Q Consensus 16 ~L~~lK~rl~~A~rG~~L--Lk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~ 72 (136)
.+.+++++....-+|++- |++..-.+..+...+.++..++++++...-.....++..
T Consensus 24 kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k 82 (151)
T PF14584_consen 24 KLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQK 82 (151)
T ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 456777888777777765 666666666666666666666665555555544444433
No 37
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=26.69 E-value=1.7e+02 Score=18.23 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=24.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A 66 (136)
-+++.||.|++++..-++++...=..++..++.+
T Consensus 2 ~Fe~qR~~Li~eI~~~~e~vl~nlN~LNRsLE~~ 35 (58)
T PF08649_consen 2 YFERQRDRLIQEISESMESVLNNLNALNRSLESV 35 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3688999999998877666666655666555544
No 38
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=26.05 E-value=2.2e+02 Score=20.97 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q psy7193 21 EARLVSAKRGHGLLKRKADALQFRFRSIHCKI 52 (136)
Q Consensus 21 K~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~ 52 (136)
|..|++|..=-++|++|+++.....+.-+.++
T Consensus 1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~L 32 (165)
T PF03398_consen 1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQL 32 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999998888766544
No 39
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=25.68 E-value=2.4e+02 Score=19.72 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHH
Q psy7193 12 PSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRS 47 (136)
Q Consensus 12 PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~ 47 (136)
.+-.+.+++|++.+.-+.=-++||-|-|+|+-.+..
T Consensus 69 ~~~~e~~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 69 VSGREVLRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999866553
No 40
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.66 E-value=4.9e+02 Score=23.37 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=32.6
Q ss_pred ccccceeEEEEee----EEeeEEeceEEeeec-CCCcccccccccccc
Q psy7193 89 IGKAQMKLRLTRE----NIGGVFLTEYEAVEN-GPDVYQIAGLSTNGH 131 (136)
Q Consensus 89 v~~~~~~v~~~~~----nvmGV~vP~~~~~~~-~~~~y~~~gl~~gg~ 131 (136)
+.++...|.+... +.-|..==+|....+ +.|.-|+.-+++||+
T Consensus 389 Me~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL~KvASGGE 436 (557)
T COG0497 389 MEKARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPLAKVASGGE 436 (557)
T ss_pred CCCceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccHHhhcchhH
Confidence 3567777777774 577888777887765 678888888999996
No 41
>cd06528 RNAP_A'' A'' subunit of Archaeal RNA Polymerase (RNAP). Archaeal RNA polymerase (RNAP), like bacterial RNAP, is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. The relative positioning of the RNAP core is highly conserved between archaeal RNAP and the three classes of eukaryotic RNAPs. In archaea, the largest subunit is split into two polypeptides, A' and A'', which are encoded by separate genes in an operon. Sequence alignments reveal that the archaeal A'' subunit corresponds to the C-terminal one-third of the RNAPII largest subunit (Rpb1). In subunit A'', several loops in the jaw domain are shorter. The RNAPII Rpb1 interacts with the second-largest subunit (Rpb2) to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis.
Probab=24.76 E-value=62 Score=27.22 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHhcccccceeEEEEeeEEeeE
Q psy7193 44 RFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGV 106 (136)
Q Consensus 44 ~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~v~~~~~~v~~~~~nvmGV 106 (136)
++..++++..-.++.++..+++....+..+....|+......++++..|.......+=..+||
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ge~vG~iaAQSiGEP~TQMTLnTFH~AGV 68 (363)
T cd06528 6 KLEEVLKEHGLTLSEAEEIIKEVLREYLRSLIEPGEAVGIVAAQSIGEPGTQMTLRTFHYAGV 68 (363)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCccccceeeeecCccceeccccccccccc
Confidence 444555555566667777788888888888888897677777888888887777777677776
No 42
>KOG0976|consensus
Probab=24.34 E-value=4.7e+02 Score=25.10 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 17 QSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 17 L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
|+.-|++...-..-.+=|++|||-+.+..+++-+..+..++++.
T Consensus 339 LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elq 382 (1265)
T KOG0976|consen 339 LLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQ 382 (1265)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444556888898888888777655444444443
No 43
>PF15460 SAS4: Something about silencing, SAS, complex subunit 4
Probab=24.23 E-value=2.4e+02 Score=19.33 Aligned_cols=31 Identities=10% Similarity=-0.043 Sum_probs=25.7
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 31 HGLLKRKADALQFRFRSIHCKIVETRYLMAD 61 (136)
Q Consensus 31 ~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~ 61 (136)
.+.++.||+-.+.++..++.++...+..-..
T Consensus 65 ~~e~e~KR~lti~ei~~~L~Kf~~wk~~~~~ 95 (101)
T PF15460_consen 65 KKELEPKRELTIKEIQAMLDKFENWKRREKR 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999998887766543
No 44
>KOG0930|consensus
Probab=24.18 E-value=2.1e+02 Score=23.87 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHH
Q psy7193 13 SRGNQSAIEARL 24 (136)
Q Consensus 13 TR~~L~~lK~rl 24 (136)
-||+|.++|+|-
T Consensus 15 E~~eL~~ir~rk 26 (395)
T KOG0930|consen 15 ERMELENIRRRK 26 (395)
T ss_pred HHHhHHHHHHHH
Confidence 378888888764
No 45
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.88 E-value=5.3e+02 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 18 SAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66 (136)
Q Consensus 18 ~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A 66 (136)
+-|..+|+-..++.++|..|-+.|...+....++.+.+.+.+.+.-.+.
T Consensus 437 ~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l 485 (861)
T PF15254_consen 437 MSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQEL 485 (861)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999988877777766666655554443
No 46
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.82 E-value=4.1e+02 Score=21.84 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=32.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchh
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFE 76 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~ 76 (136)
=|..+||.++.++..+-.+-.++...+.+.++.+-.......+.
T Consensus 59 elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 59 ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 36678888888888887777777777777777776666666644
No 47
>KOG0860|consensus
Probab=23.77 E-value=2.5e+02 Score=19.90 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH------------HHHHHHHHh--HHHhHHHHHHHHHHHHHHHHHHHHH
Q psy7193 14 RGNQSAIEARL------------VSAKRGHGL--LKRKADALQFRFRSIHCKIVETRYL 58 (136)
Q Consensus 14 R~~L~~lK~rl------------~~A~rG~~L--Lk~KrdaLi~~f~~l~~~~~~~~~~ 58 (136)
-..+.++.+++ +..+||.+| |++|.|.|-.-=-.-.+.+..+++.
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRK 86 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655 356666654 6677776654333332334444443
No 48
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.51 E-value=2.7e+02 Score=19.51 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 29 RGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAI 68 (136)
Q Consensus 29 rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~ 68 (136)
...+.|++|.+.|-..+..+-+++..+++.++.....+-.
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777666666555443
No 49
>PRK10869 recombination and repair protein; Provisional
Probab=22.34 E-value=5.5e+02 Score=22.68 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=24.7
Q ss_pred cccceeEEEEee----EEeeEEeceEEeeec-CCCccccccccccccc
Q psy7193 90 GKAQMKLRLTRE----NIGGVFLTEYEAVEN-GPDVYQIAGLSTNGHH 132 (136)
Q Consensus 90 ~~~~~~v~~~~~----nvmGV~vP~~~~~~~-~~~~y~~~gl~~gg~~ 132 (136)
+.+.+.|.+... +-.|..-..|....+ +.+.-++.-..+||+.
T Consensus 389 ~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~ 436 (553)
T PRK10869 389 PHGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGEL 436 (553)
T ss_pred CCcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHH
Confidence 445555555321 356777777777654 4444555656677763
No 50
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=22.18 E-value=3.3e+02 Score=20.08 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 13 SRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAI 68 (136)
Q Consensus 13 TR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~ 68 (136)
+.=.|.+++.+..-|...-+-.-++|-.|+..+.++++.+.....+.-..+.++..
T Consensus 21 ~yN~L~~~~~~v~~a~s~I~~~l~rR~dli~~Lv~~v~~y~~~E~~~l~~v~~~R~ 76 (186)
T PF04011_consen 21 SYNSLVRLRNAVQEAWSNIDVQLQRRHDLIPNLVEIVKSYAKHEKETLTKVTKARS 76 (186)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999998888766555555545433
No 51
>PRK11637 AmiB activator; Provisional
Probab=21.93 E-value=4.8e+02 Score=21.91 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.0
Q ss_pred HHcchhcC
Q psy7193 71 SRAKFETN 78 (136)
Q Consensus 71 ~~A~~~~G 78 (136)
..+.+..|
T Consensus 130 lra~Y~~g 137 (428)
T PRK11637 130 LDAAFRQG 137 (428)
T ss_pred HHHHHHcC
Confidence 33333334
No 52
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=21.91 E-value=1.5e+02 Score=19.62 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 37 KADALQFRFRSIHCKIVETRYLMADI 62 (136)
Q Consensus 37 KrdaLi~~f~~l~~~~~~~~~~~~~~ 62 (136)
=.+.|..+|...+.++...+....+.
T Consensus 90 q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 90 QTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666655543
No 53
>PF15219 TEX12: Testis-expressed 12
Probab=21.80 E-value=2.1e+02 Score=19.63 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHH
Q psy7193 21 EARLVSAKRGHGLLKRKADALQFRFRSIH 49 (136)
Q Consensus 21 K~rl~~A~rG~~LLk~KrdaLi~~f~~l~ 49 (136)
-.=++-|+.-.+.|++||.-|.++|.-+.
T Consensus 67 D~lfkEA~~lEnfLkqkre~LrQrlt~is 95 (100)
T PF15219_consen 67 DGLFKEANALENFLKQKRECLRQRLTVIS 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777788888888877776553
No 54
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.00 E-value=2.7e+02 Score=18.73 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=26.3
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 31 HGLLKRKADALQFRFRSIHCKIVETRYLMADIMREA 66 (136)
Q Consensus 31 ~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A 66 (136)
.+.|++|.+.|-.++..+-+++..++..+......+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888887777777777777776665443
Done!