Query psy7193
Match_columns 136
No_of_seqs 101 out of 485
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:33:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_A V-type sodium ATPase su 100.0 1.1E-32 3.6E-37 212.8 14.4 124 8-135 10-138 (217)
2 3a5c_G V-type ATP synthase sub 100.0 1.1E-31 3.6E-36 208.0 6.4 123 9-135 3-125 (223)
3 2oie_A RS21-C6; helix, hydrola 53.3 43 0.0015 21.7 8.4 79 9-88 8-106 (111)
4 3frr_A Uncharacterized protein 51.1 40 0.0014 24.7 6.0 38 17-54 10-47 (191)
5 2r2v_A GCN4 leucine zipper; co 48.5 30 0.001 18.5 4.3 28 33-60 5-32 (34)
6 3thf_A Protein shroom; coiled- 44.9 36 0.0012 25.1 4.9 36 28-63 7-42 (190)
7 3ggy_A Increased sodium tolera 41.9 56 0.0019 24.0 5.6 41 13-53 5-45 (193)
8 3c3f_A Alpha/beta peptide with 41.8 40 0.0014 17.9 3.8 28 33-60 5-32 (34)
9 1fxk_C Protein (prefoldin); ar 37.4 89 0.0031 20.7 7.6 43 29-71 88-130 (133)
10 1kd8_B GABH BLL, GCN4 acid bas 37.0 50 0.0017 17.8 5.0 29 33-61 5-33 (36)
11 1uo4_A General control protein 36.5 41 0.0014 17.9 3.0 28 33-60 5-32 (34)
12 2a3q_A Hypothetical protein; M 34.4 1.2E+02 0.0042 21.4 6.7 80 10-90 24-123 (170)
13 2wq1_A General control protein 33.1 57 0.002 17.2 4.4 28 33-60 4-31 (33)
14 2bni_A General control protein 31.1 64 0.0022 17.1 3.7 28 33-60 5-32 (34)
15 3c3g_A Alpha/beta peptide with 30.9 63 0.0022 17.0 3.8 28 33-60 4-31 (33)
16 3twe_A Alpha4H; unknown functi 29.3 57 0.002 16.0 3.8 21 39-59 4-24 (27)
17 3t49_A SCIN-B, fibrinogen-bind 28.1 1.1E+02 0.0037 18.9 5.7 34 36-69 30-70 (73)
18 3m48_A General control protein 27.1 76 0.0026 16.7 3.9 28 33-60 4-31 (33)
19 4h6h_A Fibrinogen-binding prot 24.3 1.4E+02 0.0049 19.0 5.4 33 36-68 44-83 (87)
20 2hy6_A General control protein 23.5 93 0.0032 16.5 4.0 28 33-60 5-32 (34)
21 2dnx_A Syntaxin-12; snare, HAB 20.6 2E+02 0.0068 19.2 6.4 31 37-67 92-122 (130)
22 2qdq_A Talin-1; dimerisation d 20.5 1.3E+02 0.0046 17.3 3.8 23 14-36 14-36 (50)
No 1
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=100.00 E-value=1.1e-32 Score=212.80 Aligned_cols=124 Identities=24% Similarity=0.268 Sum_probs=104.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHh
Q psy7193 8 LPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQ 87 (136)
Q Consensus 8 ~~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~ 87 (136)
++|+|||+||+++|+||++|++||+|||+|||+|+++|+++++++.++++++++.+++||++|+.|.+..|.+....++.
T Consensus 10 ~~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~ 89 (217)
T 3aon_A 10 LNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDELLA 89 (217)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999655566665
Q ss_pred cccccceeEEEEeeEEeeEEeceEEeee----c-CCCcccccccccccccccc
Q psy7193 88 NIGKAQMKLRLTRENIGGVFLTEYEAVE----N-GPDVYQIAGLSTNGHHLNM 135 (136)
Q Consensus 88 ~v~~~~~~v~~~~~nvmGV~vP~~~~~~----~-~~~~y~~~gl~~gg~~i~~ 135 (136)
+ .+...+|+++.+|||||+||.|+... . ..++| |+..||+++..
T Consensus 90 ~-~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~~y---gl~~t~~~ld~ 138 (217)
T 3aon_A 90 L-PAENVSISVVEKNIMSVKVPLMNFQYDETLNETPLEY---GYLHSNAELDR 138 (217)
T ss_dssp S-CSCCCEEEEEEEEETTEEEEEEEEECCGGGTTSCCCC---CCTTCCHHHHH
T ss_pred C-CCCceEEEEEEEEEEEEEeceEEEEecccccCCcCCc---CcccCCHHHHH
Confidence 5 45578999999999999999999874 1 22345 55666677653
No 2
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=99.97 E-value=1.1e-31 Score=207.99 Aligned_cols=123 Identities=20% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhcChhHHHHHHhc
Q psy7193 9 PILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQN 88 (136)
Q Consensus 9 ~V~PTR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~~A~~~~G~~~~~~~~~~ 88 (136)
+|+||||||+++|+||++|++||+|||+|||+|+++|+++++++.++++++++.+++||++|+.|.+..|.+....++.+
T Consensus 3 ~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~ 82 (223)
T 3a5c_G 3 QVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALG 82 (223)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999996556666555
Q ss_pred ccccceeEEEEeeEEeeEEeceEEeeecCCCcccccccccccccccc
Q psy7193 89 IGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQIAGLSTNGHHLNM 135 (136)
Q Consensus 89 v~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~~gl~~gg~~i~~ 135 (136)
+ +...+|+++.+|||||+||.|+......++| |+..||+++..
T Consensus 83 ~-~~~~~v~~~~~nImGV~vP~~~~~~~~~~~y---gl~~t~~~ld~ 125 (223)
T 3a5c_G 83 V-PPLEGVEAEVENVWGSKVPRLKATFPDGALL---SPVGTPAYTLE 125 (223)
T ss_dssp -----------------------------------------------
T ss_pred C-CCCeEEEEEEEEEEEEEeceEEeccCCCCCc---CcccCCHHHHH
Confidence 3 4567999999999999999999873333456 45556677654
No 3
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=53.31 E-value=43 Score=21.67 Aligned_cols=79 Identities=13% Similarity=0.004 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-----hHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q psy7193 9 PILPSRGNQSAIEARLVSAKRGHG-----LLKRKADALQFRFRSIHCKIV--------------ETRYLMADIMREAAIA 69 (136)
Q Consensus 9 ~V~PTR~~L~~lK~rl~~A~rG~~-----LLk~KrdaLi~~f~~l~~~~~--------------~~~~~~~~~~~~A~~~ 69 (136)
.-.|..|++..+.+++.-...|++ =.+.--..|.-|.-++.+.+. ..+..+.+.+.+..|.
T Consensus 8 ~~~p~~m~~~~lq~~~~~~~~~~dw~~~~~~~~~~~~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDvL~~ 87 (111)
T 2oie_A 8 FRFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIY 87 (111)
T ss_dssp CCCCSCSCHHHHHHHHHHHHHTTTCGGGCCHHHHHHHHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHCCCcccCCHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Confidence 346777888888888877544443 456667777777777766654 2455677777777555
Q ss_pred H-HHcchhcChhHHHHHHhc
Q psy7193 70 L-SRAKFETNAVFNQIVIQN 88 (136)
Q Consensus 70 l-~~A~~~~G~~~~~~~~~~ 88 (136)
+ ..|+. .|.|+..++...
T Consensus 88 l~~lA~~-lgiDle~al~~k 106 (111)
T 2oie_A 88 LVALAAR-CHVDLPQAVISK 106 (111)
T ss_dssp HHHHHHH-TTCCHHHHHHTT
T ss_pred HHHHHHH-HCcCHHHHHHHH
Confidence 4 44555 887888877654
No 4
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=51.08 E-value=40 Score=24.71 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q psy7193 17 QSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVE 54 (136)
Q Consensus 17 L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~~ 54 (136)
-.++|..|++|..=-++|++|++++.+..+.-+.++-+
T Consensus 10 ~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~ 47 (191)
T 3frr_A 10 AERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLA 47 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999998877655543
No 5
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.53 E-value=30 Score=18.45 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=22.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+-..+..++..+++.+.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4788888888888888888888877665
No 6
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=44.91 E-value=36 Score=25.12 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 28 KRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIM 63 (136)
Q Consensus 28 ~rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~ 63 (136)
-.|.++++.|.+.|+..+...+....+.++.+.+.+
T Consensus 7 ~~~~~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~ 42 (190)
T 3thf_A 7 EEPTNLIKQKMDELIKHLNQKIVSLKREQQTISEEC 42 (190)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888999999888888777777777776665
No 7
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=41.90 E-value=56 Score=23.97 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q psy7193 13 SRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIV 53 (136)
Q Consensus 13 TR~~L~~lK~rl~~A~rG~~LLk~KrdaLi~~f~~l~~~~~ 53 (136)
.----.++|..|++|..=-++|++|+.++.+..+.-+.++-
T Consensus 5 ~~~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL 45 (193)
T 3ggy_A 5 MIPFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLL 45 (193)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455799999999999999999999999998887665543
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.77 E-value=40 Score=17.93 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=21.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+-..+-.++..++..+.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4788888888888888888888777654
No 9
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.43 E-value=89 Score=20.73 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=28.7
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 29 RGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIALS 71 (136)
Q Consensus 29 rG~~LLk~KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~~~l~ 71 (136)
...++|++|-+.|-..+..+-+.+..++..+......+-..+.
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777777777777777777777776666655544443
No 10
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.05 E-value=50 Score=17.76 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMAD 61 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~~ 61 (136)
=|++|-+.|+.+--.+-.++..++..+.+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 47888888888888888888888887765
No 11
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.55 E-value=41 Score=17.90 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=20.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+-..+-.++..++..+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3677888888877777777777776543
No 12
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=34.42 E-value=1.2e+02 Score=21.43 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----hHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH-
Q psy7193 10 ILPSRGNQSAIEARLVSAKRGHG-----LLKRKADALQFRFRSIHCKIV--------------ETRYLMADIMREAAIA- 69 (136)
Q Consensus 10 V~PTR~~L~~lK~rl~~A~rG~~-----LLk~KrdaLi~~f~~l~~~~~--------------~~~~~~~~~~~~A~~~- 69 (136)
-.|--|++..+.+++.-...|++ =.+.-...|.-|.-++.+.+. ..+..+.+.+.+..|.
T Consensus 24 ~lpalm~~~eLqk~~~~~~~~~dW~~~~~p~~l~~~L~EEvgEL~eai~~~~~~~~g~~~~~~~~~e~l~eELGDVL~~l 103 (170)
T 2a3q_A 24 RFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYL 103 (170)
T ss_dssp CCCSCSCHHHHHHHHHHHHHTSCHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSSSCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHH
Confidence 45777888888888776543433 245566677777777766654 2455666667676444
Q ss_pred HHHcchhcChhHHHHHHhccc
Q psy7193 70 LSRAKFETNAVFNQIVIQNIG 90 (136)
Q Consensus 70 l~~A~~~~G~~~~~~~~~~v~ 90 (136)
+..|+. .|.++..++...+.
T Consensus 104 v~LA~~-lgIDleeAl~~k~~ 123 (170)
T 2a3q_A 104 VALAAR-CHVDLPQAVISKMD 123 (170)
T ss_dssp HHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHH-hCCCHHHHHHHHHH
Confidence 445555 68777776655433
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=33.09 E-value=57 Score=17.21 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=22.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+-..+-.++..+++.+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4788888888888888888888877654
No 14
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.07 E-value=64 Score=17.14 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=20.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+=..+-.++..++..+.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3778888888887777777777776554
No 15
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.94 E-value=63 Score=17.04 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=20.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+=..+-.++..++..+.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4778888888877777777777776654
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=29.28 E-value=57 Score=16.02 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7193 39 DALQFRFRSIHCKIVETRYLM 59 (136)
Q Consensus 39 daLi~~f~~l~~~~~~~~~~~ 59 (136)
|.|..++.++-+.++.++..+
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666665555544
No 17
>3t49_A SCIN-B, fibrinogen-binding protein; secreted, virulence, immune system; HET: GOL; 1.45A {Staphylococcus aureus subsp} PDB: 3t4a_G
Probab=28.09 E-value=1.1e+02 Score=18.89 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy7193 36 RKADALQFRFRSIH-------CKIVETRYLMADIMREAAIA 69 (136)
Q Consensus 36 ~KrdaLi~~f~~l~-------~~~~~~~~~~~~~~~~A~~~ 69 (136)
.|||+++.+++... ++..+.+..++..+++....
T Consensus 30 yKR~Imm~~y~AK~Alksknf~kMa~AK~~LE~IY~eI~e~ 70 (73)
T 3t49_A 30 YKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEI 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999988543 34445555555555554443
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.07 E-value=76 Score=16.74 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=21.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+=..+-.++..++..+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3788888888888888888877776543
No 19
>4h6h_A Fibrinogen-binding protein; complement system, innate immunity, staphylococcus aureus ST biology, immune system; 2.50A {Staphylococcus aureus subsp} PDB: 4h6i_A
Probab=24.28 E-value=1.4e+02 Score=19.00 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q psy7193 36 RKADALQFRFRSIH-------CKIVETRYLMADIMREAAI 68 (136)
Q Consensus 36 ~KrdaLi~~f~~l~-------~~~~~~~~~~~~~~~~A~~ 68 (136)
.|||+++.+++... ++..+.+..++..+++...
T Consensus 44 yKR~Imm~~y~AK~Alksknf~kMa~AK~~LE~IY~eIde 83 (87)
T 4h6h_A 44 YKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDE 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 49999999998543 3444555555555554443
No 20
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.46 E-value=93 Score=16.49 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=19.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 33 LLKRKADALQFRFRSIHCKIVETRYLMA 60 (136)
Q Consensus 33 LLk~KrdaLi~~f~~l~~~~~~~~~~~~ 60 (136)
=|++|-+.|+.+=..+..++..+++.+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3677777777777777777777776654
No 21
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=2e+02 Score=19.22 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7193 37 KADALQFRFRSIHCKIVETRYLMADIMREAA 67 (136)
Q Consensus 37 KrdaLi~~f~~l~~~~~~~~~~~~~~~~~A~ 67 (136)
-++-|..+|...+.++..+++...+..+..+
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3666788888888888888888777776543
No 22
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=20.54 E-value=1.3e+02 Score=17.26 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q psy7193 14 RGNQSAIEARLVSAKRGHGLLKR 36 (136)
Q Consensus 14 R~~L~~lK~rl~~A~rG~~LLk~ 36 (136)
+++.++..+.|.-|+++..-+.+
T Consensus 14 qe~iLr~ErELEeAr~~La~iR~ 36 (50)
T 2qdq_A 14 QEEMLRKERELEEARKKLAQIRQ 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888777655443
Done!