RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7193
         (136 letters)



>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta
           fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central
           AXIS; HET: MSE; 2.00A {Enterococcus hirae}
          Length = 217

 Score = 82.1 bits (202), Expect = 2e-20
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 2   SDGKDKLPILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMAD 61
                +L + P+R   + ++ +L +A RGH LLK K D L  +F  +  K  E R  +  
Sbjct: 4   GSSGMRLNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEK 63

Query: 62  IMREAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLT--EYEAVENGPD 119
             + A      AK           +  +    + + +  +NI  V +    ++  E   +
Sbjct: 64  ETQTAMKDFVLAKSTVE-EAFIDELLALPAENVSISVVEKNIMSVKVPLMNFQYDETLNE 122

Query: 120 VYQIAGLSTNGHHLNMM 136
                G   +   L+  
Sbjct: 123 TPLEYGYLHSNAELDRS 139


>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
           vacuolar type, hydrolase, ATP synthesis, ATP-binding,
           hydrogen ION transport; HET: ADP; 4.51A {Thermus
           thermophilus} PDB: 3a5d_G 3j0j_G*
          Length = 223

 Score = 71.8 bits (175), Expect = 2e-16
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 10  ILPSRGNQSAIEARLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMADIMREAAIA 69
           + P+R N      +L  A++G  LLK+K DAL   F  +  + +E R  +    +EA  A
Sbjct: 4   VSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAA 63

Query: 70  LSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQIAGLS 127
           L  A+                     +    EN+ G  +   +A      +    G  
Sbjct: 64  LLLAQAFDGP-EVVAGAALGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTP 120


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.50
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 19/44 (43%)

Query: 87  QNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVYQIAGLSTNG 130
           Q + K Q  L+L            Y A ++ P       L+   
Sbjct: 20  QALKKLQASLKL------------Y-ADDSAP------ALAIKA 44


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 0.62
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 24/99 (24%)

Query: 6   DKLPILPSRGNQSAIEAR--LVSAKRGHGLL-------KRKADALQFRFRSIHCKI-VET 55
           D    +  R +    E R  L S    + LL        +  +A    F ++ CKI + T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----F-NLSCKILLTT 272

Query: 56  RY------LMADIMREAAIALSRAKF---ETNAVFNQIV 85
           R+      L A      ++          E  ++  + +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311



 Score = 27.9 bits (61), Expect = 1.3
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 17/54 (31%)

Query: 93  QMKLRLTRENIGGV---FLTEYEAVENGPDVYQIAGLSTN----------GHHL 133
            ++L++  EN   +    +  Y    N P  +    L             GHHL
Sbjct: 432 YLELKVKLENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHL 481


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 1.7
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 85  VIQNIGKAQMKLRLTRENIGGVFLTEYEAVE----NGPDVYQIAG 125
            I N+ + Q++  + + N     L   + VE    NG     ++G
Sbjct: 340 SISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVNGAKNLVVSG 381


>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
           thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
           ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
           enterica subsp}
          Length = 189

 Score = 25.7 bits (55), Expect = 4.4
 Identities = 12/88 (13%), Positives = 25/88 (28%)

Query: 36  RKADALQFRFRSIHCKIVETRYLMADIMREAAIALSRAKFETNAVFNQIVIQNIGKAQMK 95
           R       R    H  ++             A+ +        A F   +++    +   
Sbjct: 43  RHVLPQGSRMVKYHVSLLGPLGHELTRAWALAMVMKETDVIEKAFFTAGMVEKRLHSPDD 102

Query: 96  LRLTRENIGGVFLTEYEAVENGPDVYQI 123
           +R    +  G+   EY+     P V  +
Sbjct: 103 VRRVFMSATGISRGEYDRSIKSPAVNDM 130


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,063,122
Number of extensions: 114606
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 10
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)