RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7193
         (136 letters)



>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
           thermophilus [TaxId: 274]}
          Length = 230

 Score = 24.2 bits (52), Expect = 5.7
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 5/57 (8%)

Query: 65  EAAIALSRAKFETNAVFNQIVIQNIGKAQMKLRLTRENIGGVFLTEYEAVENGPDVY 121
           E A  L++           ++ Q++    M     +       L E         V+
Sbjct: 16  ETAFWLAQKGVRVG-----LLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVW 67


>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert
          domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 77

 Score = 22.7 bits (49), Expect = 8.8
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 23 RLVSAKRGHGLLKRKADALQFRFRSIHCKIVETRYLMA 60
          R+  A+     +KR+   L F +R +   + E +  +A
Sbjct: 21 RVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLA 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,501
Number of extensions: 19168
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 4
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)