BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7195
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
 pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
 pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
          Length = 403

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 16  MKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDP 75
           +KAPK+F +A+ ++K FL E T  KI +     A W+ +LL+ +  D  P   GG   DP
Sbjct: 192 VKAPKLFPVAYNLIKPFLSEDTRKKIXVL---GANWKEVLLKHISPDQVPVEYGGTXTDP 248

Query: 76  DGNPRCLTKIPQIGKVPKSMYMKKPIDKSLEEN 108
           DGNP+C +KI   G +P+  Y++  + +  E +
Sbjct: 249 DGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHS 281


>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
           Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
           Vitamin E And Cholesterol Biosynthesis
 pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
           Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
           Vitamin E And Cholesterol Biosynthesis
          Length = 403

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 16  MKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDP 75
           +KAPK+F +A+ ++K FL E T  KI +     A W+ +LL+ +  D  P   GG   DP
Sbjct: 192 VKAPKLFPVAYNLIKPFLSEDTRKKIMVL---GANWKEVLLKHISPDQVPVEYGGTMTDP 248

Query: 76  DGNPRCLTKIPQIGKVPKSMYMKKPIDKSLEEN 108
           DGNP+C +KI   G +P+  Y++  + +  E +
Sbjct: 249 DGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHS 281


>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
           Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
           Vitamin E And Cholesterol Biosynthesis
          Length = 403

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 16  MKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDP 75
           +KAPK+F +A+ ++K FL E T  KI +     A W+ +LL+ +  D  P   GG   DP
Sbjct: 192 VKAPKLFPVAYNLIKPFLSEDTRKKIMVL---GANWKEVLLKHISPDQVPVEYGGTMTDP 248

Query: 76  DGNPRCLTKIPQIGKVPKSMYMKKPIDKSLEEN 108
           DGNP+C +KI   G +P+  Y++  + +  E +
Sbjct: 249 DGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHS 281


>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
           Saccharomyces Cerevisiae
          Length = 296

 Score = 31.6 bits (70), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 16  MKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGG 70
           + AP  F+ A+R+ K FL   T+SKI +     + ++  LL+Q+  +  P   GG
Sbjct: 212 INAPFGFSTAFRLFKPFLDPVTVSKIFILG---SSYQKELLKQIPAENLPVKFGG 263


>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
          Length = 249

 Score = 29.6 bits (65), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 18/75 (24%)

Query: 42  HLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPI 101
           H   A+ AK   I  + + E +  A +GG   DPD NPR                ++  +
Sbjct: 15  HRKAAQDAKRGKIFTKIIRELVTAAKLGGG--DPDANPR----------------LRAAV 56

Query: 102 DKSLEENYTQACVKK 116
           DK+L  N T+  + +
Sbjct: 57  DKALSNNMTRDTLNR 71


>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
           Mazei. Northeast Structural Genomics Consortium Target
           Id Mar208
          Length = 425

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 48  PAKWRPILLEQMEEDMWPASMGGAGRDPDGN 78
           P K   +LL Q   D WP +   +G DP GN
Sbjct: 358 PGKRYEVLLIQSYHDEWPVNRAASGTDP-GN 387


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,440,845
Number of Sequences: 62578
Number of extensions: 177595
Number of successful extensions: 279
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 12
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)