Query psy7195
Match_columns 134
No_of_seqs 184 out of 1078
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:35:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00650 CRAL_TRIO: CRAL/TRIO 99.8 3.7E-20 8E-25 133.2 4.6 67 3-71 93-159 (159)
2 KOG1471|consensus 99.8 4.5E-20 9.7E-25 147.6 4.1 69 4-75 192-260 (317)
3 smart00516 SEC14 Domain in hom 99.7 1.3E-17 2.9E-22 119.7 4.7 66 4-72 92-157 (158)
4 cd00170 SEC14 Sec14p-like lipi 99.7 9.6E-17 2.1E-21 113.4 5.1 65 3-71 93-157 (157)
5 KOG1470|consensus 99.6 9.1E-16 2E-20 124.0 3.0 65 4-73 180-244 (324)
6 PF13716 CRAL_TRIO_2: Divergen 98.2 4.7E-07 1E-11 64.9 0.4 63 6-73 81-145 (149)
7 KOG4406|consensus 96.4 0.0028 6.1E-08 53.4 3.0 50 9-63 165-214 (467)
8 PF04378 RsmJ: Ribosomal RNA s 50.2 10 0.00023 29.9 1.7 30 11-40 206-235 (245)
9 COG2961 ComJ Protein involved 49.7 12 0.00026 30.1 1.9 27 11-37 237-263 (279)
10 PF06280 DUF1034: Fn3-like dom 38.5 35 0.00076 23.0 2.7 19 110-128 62-80 (112)
11 PF14310 Fn3-like: Fibronectin 37.0 50 0.0011 20.4 3.1 19 109-127 24-42 (71)
12 PF12174 RST: RCD1-SRO-TAF4 (R 34.0 33 0.00071 21.9 1.8 22 18-39 6-28 (70)
13 PF03641 Lysine_decarbox: Poss 27.2 75 0.0016 22.2 2.9 42 12-58 86-132 (133)
14 PF08152 GUCT: GUCT (NUC152) d 24.3 63 0.0014 21.7 2.0 20 23-42 32-51 (97)
15 KOG0680|consensus 21.1 21 0.00045 29.9 -1.1 58 34-94 314-373 (400)
16 PF08588 DUF1769: Protein of u 20.4 76 0.0017 19.5 1.6 25 17-41 17-41 (56)
No 1
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.80 E-value=3.7e-20 Score=133.21 Aligned_cols=67 Identities=25% Similarity=0.456 Sum_probs=60.1
Q ss_pred ccccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCC
Q psy7195 3 LELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGA 71 (134)
Q Consensus 3 ~~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~ 71 (134)
.++||||++++||||+|++|+++|+++++||+++|++||+++++ .++.+.|.++|++++||.+|||+
T Consensus 93 ~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~--~~~~~~l~~~i~~~~lP~~~GG~ 159 (159)
T PF00650_consen 93 QDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSG--SDWKAKLKEYIDPEQLPVEYGGT 159 (159)
T ss_dssp HHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECT--TCHCHHHCCCSTGGGSBGGGTSS
T ss_pred cccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECC--cccHHHHHhhCCHhHCchhcCCC
Confidence 36899999999999999999999999999999999999999974 56778999999999999999996
No 2
>KOG1471|consensus
Probab=99.79 E-value=4.5e-20 Score=147.64 Aligned_cols=69 Identities=30% Similarity=0.480 Sum_probs=64.5
Q ss_pred cccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCCCCC
Q psy7195 4 ELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDP 75 (134)
Q Consensus 4 ~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~ 75 (134)
+.|||+++++||||+|++|+++|+++||||+++|++||++++ .++.++|+++|+++.||.+|||++.+.
T Consensus 192 ~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~---~~~~~~L~k~i~~~~LP~~yGG~~~~~ 260 (317)
T KOG1471|consen 192 DNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLH---SKDKESLLKYIPPEVLPEEYGGTCGDL 260 (317)
T ss_pred HhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecC---CCchhhhhhhCCHhhCccccCCCcccc
Confidence 789999999999999999999999999999999999999555 458899999999999999999998764
No 3
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.70 E-value=1.3e-17 Score=119.72 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=62.4
Q ss_pred cccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCC
Q psy7195 4 ELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAG 72 (134)
Q Consensus 4 ~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~ 72 (134)
+.||++++++||+|+|++|.++|+++++|+++++++||++++ +++.+.|.++|++++||.+|||++
T Consensus 92 ~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~---~~~~~~L~~~i~~~~lP~~~GG~~ 157 (158)
T smart00516 92 DHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVG---NDSKEELLEYIDPEQLPEELGGTL 157 (158)
T ss_pred HHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeC---CCCHHHHHhhCCHhhCcHhhCCCC
Confidence 679999999999999999999999999999999999999999 456789999999999999999985
No 4
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.66 E-value=9.6e-17 Score=113.40 Aligned_cols=65 Identities=25% Similarity=0.456 Sum_probs=61.0
Q ss_pred ccccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCC
Q psy7195 3 LELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGA 71 (134)
Q Consensus 3 ~~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~ 71 (134)
-+.||++++++||+|+|++|+++|+++++|+++++++||+++++ + .+.|.+++++++||.+|||+
T Consensus 93 ~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~---~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 93 QDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGS---D-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecC---C-HHHHHhhCChhhCcHhhCCC
Confidence 36799999999999999999999999999999999999999983 3 68999999999999999995
No 5
>KOG1470|consensus
Probab=99.57 E-value=9.1e-16 Score=124.00 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=60.4
Q ss_pred cccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCCC
Q psy7195 4 ELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGR 73 (134)
Q Consensus 4 ~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~ 73 (134)
++|||||++++++|+||+|..+|+++||||+++|++||.|..+ .+.+.+|||+++||..+||+..
T Consensus 180 ~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~-----~~~l~~~~d~~~l~s~~GG~~~ 244 (324)
T KOG1470|consen 180 DHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP-----KDDLSEYFDESQLPSLFGGKLL 244 (324)
T ss_pred HhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecC-----hhHHHhhCCccccchhhCCCcc
Confidence 5899999999999999999999999999999999999999984 2459999999999999999654
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=98.16 E-value=4.7e-07 Score=64.92 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=45.5
Q ss_pred cccccceEEEEeCCHHHHHHH-HHHhhccChhh-hCceEEecCCCCChHHHHHccCCCCCCCccCCCCCC
Q psy7195 6 CNDSPVCNCQMKAPKVFTLAW-RVVKKFLHEYT-ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGR 73 (134)
Q Consensus 6 ~pe~l~~i~iINaP~~f~~~~-~ivkpfL~~~t-~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~ 73 (134)
++.+++++||+|+.+++..++ .+.+++.+.+. ..||+++.+ .++|.++||.++||+.+||+..
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s-----l~~L~~~i~~~qL~~~lp~~~~ 145 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS-----LSELSKHIDPSQLPESLPGVLQ 145 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS-----TCGGGGTSGGGG------HHH-
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC-----HHHHHhhCCHHHhcccCCCEEe
Confidence 455799999999999999999 55678889988 999999873 5899999999999999998754
No 7
>KOG4406|consensus
Probab=96.38 E-value=0.0028 Score=53.41 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=43.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCC
Q psy7195 9 SPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDM 63 (134)
Q Consensus 9 ~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~ 63 (134)
.++.+|+|+.-|+..++|+++|||++.+..+||+-+. ..++|.+++.-+.
T Consensus 165 NlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n-----~lseL~~~l~l~r 214 (467)
T KOG4406|consen 165 NLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN-----SLSELFEALKLNR 214 (467)
T ss_pred hhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee-----hHHHHHHhhhhhh
Confidence 4788999999999999999999999999999999987 4688888765443
No 8
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=50.17 E-value=10 Score=29.94 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=22.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhhccChhhhCc
Q psy7195 11 VCNCQMKAPKVFTLAWRVVKKFLHEYTISK 40 (134)
Q Consensus 11 ~~i~iINaP~~f~~~~~ivkpfL~~~t~~K 40 (134)
..++|||+||-|.-...-+-|+|.+...+.
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~~ 235 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLAQD 235 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSSTT
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhCcC
Confidence 358999999999998888888887665443
No 9
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=49.69 E-value=12 Score=30.13 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=23.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhccChhh
Q psy7195 11 VCNCQMKAPKVFTLAWRVVKKFLHEYT 37 (134)
Q Consensus 11 ~~i~iINaP~~f~~~~~ivkpfL~~~t 37 (134)
..|+|||+||-+.--...+-|||....
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L 263 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLL 263 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHh
Confidence 368999999999999999999986544
No 10
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=38.55 E-value=35 Score=22.95 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=15.7
Q ss_pred eEEEEeCCCcEEEEEEecC
Q psy7195 110 TQACVKKGEKLSLDFIAPQ 128 (134)
Q Consensus 110 ~~~~V~~g~~~~v~~~v~~ 128 (134)
.+++|+||++.+|.+.+.-
T Consensus 62 ~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 62 DTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEE-TTEEEEEEEEEE-
T ss_pred CeEEECCCCEEEEEEEEEe
Confidence 4899999999999999974
No 11
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=37.03 E-value=50 Score=20.39 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=14.8
Q ss_pred ceEEEEeCCCcEEEEEEec
Q psy7195 109 YTQACVKKGEKLSLDFIAP 127 (134)
Q Consensus 109 ~~~~~V~~g~~~~v~~~v~ 127 (134)
.+.+.+.+|++.+|.+.++
T Consensus 24 F~rv~l~pGes~~v~~~l~ 42 (71)
T PF14310_consen 24 FERVSLAPGESKTVSFTLP 42 (71)
T ss_dssp EEEEEE-TT-EEEEEEEEE
T ss_pred eEEEEECCCCEEEEEEEEC
Confidence 3578999999999999986
No 12
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=34.04 E-value=33 Score=21.89 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=17.5
Q ss_pred CCHH-HHHHHHHHhhccChhhhC
Q psy7195 18 APKV-FTLAWRVVKKFLHEYTIS 39 (134)
Q Consensus 18 aP~~-f~~~~~ivkpfL~~~t~~ 39 (134)
.||+ |.+++.+++++|++.-..
T Consensus 6 sp~~~F~~L~~~l~~~l~~~~~~ 28 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLPPSKMD 28 (70)
T ss_pred CCcccHHHHHHHHHHHCCHHHHH
Confidence 4555 999999999999976533
No 13
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=27.17 E-value=75 Score=22.21 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=32.0
Q ss_pred eEEEEeCCHHHHHHHHHH-----hhccChhhhCceEEecCCCCChHHHHHcc
Q psy7195 12 CNCQMKAPKVFTLAWRVV-----KKFLHEYTISKIHLYRAEPAKWRPILLEQ 58 (134)
Q Consensus 12 ~i~iINaP~~f~~~~~iv-----kpfL~~~t~~Ki~~~~~~~~~~~~~L~~~ 58 (134)
-++++|..-++.-++.++ ..|+++...+.++++.+ .+++.++
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~-----~~e~~~~ 132 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDD-----PEEALEY 132 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESS-----HHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCC-----HHHHHhh
Confidence 689999887777777766 67999999999999873 3555543
No 14
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=24.26 E-value=63 Score=21.68 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=15.9
Q ss_pred HHHHHHHhhccChhhhCceE
Q psy7195 23 TLAWRVVKKFLHEYTISKIH 42 (134)
Q Consensus 23 ~~~~~ivkpfL~~~t~~Ki~ 42 (134)
..+|+.++.+|++...++|.
T Consensus 32 ~y~~~~L~~~L~e~~~~~v~ 51 (97)
T PF08152_consen 32 GYAWRILRRQLSEEIADKVK 51 (97)
T ss_dssp HHHHHHHHHHS-HHHHTT-E
T ss_pred hhHHHHHHHhcCHHHHHhhC
Confidence 57899999999999988765
No 15
>KOG0680|consensus
Probab=21.06 E-value=21 Score=29.93 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=36.8
Q ss_pred ChhhhCceEEecCCC--CChHHHHHccCCCCCCCccCCCCCCCCCCCCccccccCCCCcCCcc
Q psy7195 34 HEYTISKIHLYRAEP--AKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKS 94 (134)
Q Consensus 34 ~~~t~~Ki~~~~~~~--~~~~~~L~~~i~~~~LP~~~GG~~~~~~gd~~c~~~i~~gg~vP~~ 94 (134)
.+...+-|.+.|++. -++.+.|...+ ...+|.+|+=....| +||.|-.+- -|.+++++
T Consensus 314 ~p~l~~NIv~iGGn~~fPgF~~RL~~El-r~l~P~d~~v~V~~p-~dp~~~~W~-~g~~~~~~ 373 (400)
T KOG0680|consen 314 RPLLLENIVCIGGNSNFPGFRQRLAREL-RSLLPADWEVSVSVP-EDPITFAWE-GGSEFAKT 373 (400)
T ss_pred HHHHHhcEEEecCccCCcchHHHHHHHH-HhhCCccceEEEecC-CCcceeeeh-hccccccC
Confidence 334456677777531 13455666655 578999999888777 888776652 24556643
No 16
>PF08588 DUF1769: Protein of unknown function (DUF1769); InterPro: IPR013897 This entry is found in fungal proteins with unknown function.
Probab=20.40 E-value=76 Score=19.48 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.7
Q ss_pred eCCHHHHHHHHHHhhccChhhhCce
Q psy7195 17 KAPKVFTLAWRVVKKFLHEYTISKI 41 (134)
Q Consensus 17 NaP~~f~~~~~ivkpfL~~~t~~Ki 41 (134)
..|+.|++.+++++-|+++.+..-+
T Consensus 17 ~lP~g~~~alk~~~w~idP~l~~D~ 41 (56)
T PF08588_consen 17 RLPPGFNAALKFFKWFIDPGLEGDL 41 (56)
T ss_pred hCCchHHHHHHHHHHHhCCCccccc
Confidence 5788899999999999998775443
Done!