Query psy7195
Match_columns 134
No_of_seqs 184 out of 1078
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:36:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 1E-34 3.5E-39 237.8 11.5 125 4-134 180-304 (403)
2 3q8g_A CRAL-TRIO domain-contai 99.9 1.5E-23 5.2E-28 168.0 5.8 92 4-98 215-316 (320)
3 1aua_A Phosphatidylinositol tr 99.9 7E-23 2.4E-27 161.2 8.2 75 4-81 200-274 (296)
4 1r5l_A Alpha-TTP, protein (alp 99.8 1.5E-20 5.1E-25 144.7 6.7 67 3-73 168-234 (262)
5 3hx3_A Retinaldehyde-binding p 99.8 7.3E-21 2.5E-25 151.9 4.1 78 3-84 227-304 (316)
6 3pg7_A Neurofibromin; SEC lipi 96.6 0.0012 4.2E-08 50.9 3.1 54 6-64 90-144 (256)
7 3peg_A Neurofibromin; SEC14 do 93.9 0.022 7.4E-07 44.8 1.9 55 5-64 108-163 (290)
8 2oo3_A Protein involved in cat 42.4 11 0.00037 29.3 1.8 27 11-37 238-264 (283)
9 2kv5_A FST, putative uncharact 23.1 25 0.00084 18.6 0.6 22 18-39 10-31 (33)
10 2vqe_B 30S ribosomal protein S 21.6 74 0.0025 24.2 3.3 67 5-74 32-104 (256)
11 3sbx_A Putative uncharacterize 21.3 65 0.0022 23.2 2.8 45 11-60 139-188 (189)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1e-34 Score=237.75 Aligned_cols=125 Identities=30% Similarity=0.588 Sum_probs=115.5
Q ss_pred cccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCCCCCCCCCcccc
Q psy7195 4 ELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLT 83 (134)
Q Consensus 4 ~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~gd~~c~~ 83 (134)
++|||||+++||||+|++|+++|+++||||+++|++||+|++ +++.+.|.++|++++||++|||++++++||+.|.+
T Consensus 180 ~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~---~~~~~~L~~~I~~~~LP~~yGG~~~~~~~~~~c~~ 256 (403)
T 1olm_A 180 ENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG---ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKS 256 (403)
T ss_dssp HHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC---TTHHHHHTTTSCGGGSBGGGTSSBCCTTCCTTCTT
T ss_pred hhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEC---hhHHHHHHhhcChhhCchhhCCCcCCCCCCccccc
Confidence 689999999999999999999999999999999999999998 56888999999999999999999999999999999
Q ss_pred ccCCCCcCCcccccCCCCCCccCCcceEEEEeCCCcEEEEEEecCCCeeeC
Q psy7195 84 KIPQIGKVPKSMYMKKPIDKSLEENYTQACVKKGEKLSLDFIAPQEGYFLK 134 (134)
Q Consensus 84 ~i~~gg~vP~~~y~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~gs~l~ 134 (134)
.+++||+||+++|..+....... ++++|+||++++|+|+|.++||+|+
T Consensus 257 ~i~~gg~vp~~~~~~~~~~~~~~---~~~~V~~g~~~~v~~~v~~~g~~l~ 304 (403)
T 1olm_A 257 KINYGGDIPRKYYVRDQVKQQYE---HSVQISRGSSHQVEYEILFPGCVLR 304 (403)
T ss_dssp TCBCCCCCCGGGCSCSSCCCCCS---EEEEECTTCEEEEEEEECSTTCEEE
T ss_pred ccccCCCCCcccccCCCcccccc---eEEEEcCCCEEEEEEEEcCCCCEEE
Confidence 99999999999999876332222 4699999999999999999999984
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.88 E-value=1.5e-23 Score=168.00 Aligned_cols=92 Identities=22% Similarity=0.296 Sum_probs=84.2
Q ss_pred cccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCCCCCCCCCcc--
Q psy7195 4 ELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRC-- 81 (134)
Q Consensus 4 ~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~gd~~c-- 81 (134)
+.|||||+++||||+|++|+++|+++||||+++|++||+|++ +++.+.|.++|++++||++|||++++++.++.|
T Consensus 215 ~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~---~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~ggc~~ 291 (320)
T 3q8g_A 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILG---SSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYY 291 (320)
T ss_dssp HHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECC---TTHHHHHHHHSCGGGSBGGGTSCBCCSSTTSCGGG
T ss_pred hhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeC---CCcHHHHHhhCChhhCChhhCCCCCCCCCCCCeec
Confidence 689999999999999999999999999999999999999998 568899999999999999999999987655567
Q ss_pred --------ccccCCCCcCCcccccC
Q psy7195 82 --------LTKIPQIGKVPKSMYMK 98 (134)
Q Consensus 82 --------~~~i~~gg~vP~~~y~~ 98 (134)
...+.++|.+|+++|++
T Consensus 292 ~~~gpw~~~~~~~~~~~~~~~~~~~ 316 (320)
T 3q8g_A 292 SDIGPWRDPRYIGPEGEIPNIFGKF 316 (320)
T ss_dssp BCBSGGGCTTTCCTTCCCCCTTGGG
T ss_pred CCCCCCCChhhcCCCCccCcccccC
Confidence 35678899999999887
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.88 E-value=7e-23 Score=161.16 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=68.5
Q ss_pred cccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCCCCCCCCCcc
Q psy7195 4 ELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRC 81 (134)
Q Consensus 4 ~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~gd~~c 81 (134)
++|||||+++||||+|++|+++|+++||||+++|++||+|++ +++.+.|.++|++++||++|||++++++.+..|
T Consensus 200 ~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~---~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~~g~ 274 (296)
T 1aua_A 200 NYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILG---SSYQKELLKQIPAENLPVKFGGKSEVDESKGGL 274 (296)
T ss_dssp HHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECC---SCCHHHHTTTSCSSSSBGGGTSCBCCCGGGCCS
T ss_pred HhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeC---cccHHHHHhhCCHhhCcHHhCCCCCCCCCCCCc
Confidence 689999999999999999999999999999999999999998 468889999999999999999999887633334
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.81 E-value=1.5e-20 Score=144.70 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=63.1
Q ss_pred ccccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCCC
Q psy7195 3 LELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGR 73 (134)
Q Consensus 3 ~~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~ 73 (134)
-+.|||||+++||||+|++|+++|+++||||+++|++||+|++ +++.+.|.++|+ ++||++|||++.
T Consensus 168 q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~---~~~~~~L~~~i~-~~LP~~yGG~~~ 234 (262)
T 1r5l_A 168 TDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG---NNYKQSLLQHFP-DILPLEYGGEEF 234 (262)
T ss_dssp HTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECC---SSCHHHHHHHST-TTSCGGGTCSSC
T ss_pred HhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeC---CCcHHHHHHHhh-hhCcHhhCCCCC
Confidence 3689999999999999999999999999999999999999998 467889999999 999999999964
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.81 E-value=7.3e-21 Score=151.86 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=70.2
Q ss_pred ccccccccceEEEEeCCHHHHHHHHHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCCCccCCCCCCCCCCCCccc
Q psy7195 3 LELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCL 82 (134)
Q Consensus 3 ~~~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~gd~~c~ 82 (134)
-+.|||||+++||||+|++|+++|+++||||+++|++||+|++ +++ +.|.++||+++||++|||++.+.+++.-|.
T Consensus 227 q~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~---~~~-~~L~~~I~~~~LP~eyGG~~~~~d~~~~~~ 302 (316)
T 3hx3_A 227 QDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG---DDL-SGFYQEIDENILPSDFGGTLPKYDGKAVAE 302 (316)
T ss_dssp HTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE---TCC-HHHHHHSCGGGSBGGGTSSBCCCCHHHHHH
T ss_pred HHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC---CCH-HHHHhhCCHhhCcHhhCCCCCCcChhHHHH
Confidence 3689999999999999999999999999999999999999998 455 699999999999999999998888765554
Q ss_pred cc
Q psy7195 83 TK 84 (134)
Q Consensus 83 ~~ 84 (134)
..
T Consensus 303 ~l 304 (316)
T 3hx3_A 303 QL 304 (316)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=96.57 E-value=0.0012 Score=50.91 Aligned_cols=54 Identities=7% Similarity=-0.045 Sum_probs=43.5
Q ss_pred cccccceEEEEeCCHHHHHHHHH-HhhccChhhhCceEEecCCCCChHHHHHccCCCCCC
Q psy7195 6 CNDSPVCNCQMKAPKVFTLAWRV-VKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMW 64 (134)
Q Consensus 6 ~pe~l~~i~iINaP~~f~~~~~i-vkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~L 64 (134)
+.+.++++||+|++++|...|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 90 ~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s-----l~eL~~~i~~~~L 144 (256)
T 3pg7_A 90 AYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC-----PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS-----TTGGGGTSCGGGC
T ss_pred HHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC-----HHHHHhhcCHHHc
Confidence 44678999999999999977665 466776788899999973 5789999977665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=93.90 E-value=0.022 Score=44.78 Aligned_cols=55 Identities=7% Similarity=-0.089 Sum_probs=36.1
Q ss_pred ccccccceEEEEeCCHHHHHHH-HHHhhccChhhhCceEEecCCCCChHHHHHccCCCCCC
Q psy7195 5 LCNDSPVCNCQMKAPKVFTLAW-RVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMW 64 (134)
Q Consensus 5 ~~pe~l~~i~iINaP~~f~~~~-~ivkpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~L 64 (134)
.+.++++++||+|++++|...+ ...++|...+..+|+.+++. . ..|.++++.+++
T Consensus 108 ~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~----~-~~L~~~i~~~~~ 163 (290)
T 3peg_A 108 FAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC----P-GKLAEHIEHEQQ 163 (290)
T ss_dssp HHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS----S-CC----------
T ss_pred HHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC----H-HHHHhhCCHHHh
Confidence 3567899999999999999755 56688888899999999873 2 348888877754
No 8
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=42.38 E-value=11 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhccChhh
Q psy7195 11 VCNCQMKAPKVFTLAWRVVKKFLHEYT 37 (134)
Q Consensus 11 ~~i~iINaP~~f~~~~~ivkpfL~~~t 37 (134)
..++|||+||-+.-..+-+.|+|.+..
T Consensus 238 sGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 238 CGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred eeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 368999999999999888888886644
No 9
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=23.13 E-value=25 Score=18.55 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHhhccChhhhC
Q psy7195 18 APKVFTLAWRVVKKFLHEYTIS 39 (134)
Q Consensus 18 aP~~f~~~~~ivkpfL~~~t~~ 39 (134)
+|-+..++..++..||+.+--+
T Consensus 10 aPivVGvvl~L~d~WLn~r~~~ 31 (33)
T 2kv5_A 10 APIFVGLVLEMISRVLDEEDDS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHcccccc
Confidence 6788889999999999876533
No 10
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=21.64 E-value=74 Score=24.22 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=37.3
Q ss_pred ccccccceEEEEeCCHHHHHHHHHHhhccCh--hhhCceEEecCCCCChHHHHHccCCCCC---C-CccCCCCCCC
Q psy7195 5 LCNDSPVCNCQMKAPKVFTLAWRVVKKFLHE--YTISKIHLYRAEPAKWRPILLEQMEEDM---W-PASMGGAGRD 74 (134)
Q Consensus 5 ~~pe~l~~i~iINaP~~f~~~~~ivkpfL~~--~t~~Ki~~~~~~~~~~~~~L~~~i~~~~---L-P~~~GG~~~~ 74 (134)
+|-+| ..+||||.-.....+-... .|+.. .-..+|-|.++.+ ..++.+.+...... + -...||+++.
T Consensus 32 Iyg~R-ngihIIdL~kT~~~L~~A~-~~i~~~a~~gg~iLfVgTk~-~a~~~V~~~A~~~g~~yv~~RWlgG~LTN 104 (256)
T 2vqe_B 32 IYAER-NGIHIIDLQKTMEELERTF-RFIEDLAMRGGTILFVGTKK-QAQDIVRMEAERAGMPYVNQRWLGGMLTN 104 (256)
T ss_dssp EEEEE-TTEEEECHHHHHHHHHHHH-HHHHHHHTTTCCEEEECCSS-SSTTTTTTTTTSSSCCEECSCCCTTTTTT
T ss_pred eeccc-CCeEEEeHHHHHHHHHHHH-HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHHhCCeeecCeeCCCcccC
Confidence 56677 7899999776554433222 23332 3457899998632 22333333322221 1 2567999885
No 11
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=21.30 E-value=65 Score=23.22 Aligned_cols=45 Identities=4% Similarity=-0.030 Sum_probs=33.1
Q ss_pred ceEEEEeCCHHHHHHHHHH-----hhccChhhhCceEEecCCCCChHHHHHccCC
Q psy7195 11 VCNCQMKAPKVFTLAWRVV-----KKFLHEYTISKIHLYRAEPAKWRPILLEQME 60 (134)
Q Consensus 11 ~~i~iINaP~~f~~~~~iv-----kpfL~~~t~~Ki~~~~~~~~~~~~~L~~~i~ 60 (134)
+-++++|..-+++-++.++ .-|++++.++.+.+..+ .+++.+++.
T Consensus 139 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~-----~ee~~~~l~ 188 (189)
T 3sbx_A 139 KSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN-----LDDALQACA 188 (189)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS-----HHHHHHHHC
T ss_pred CCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC-----HHHHHHHhc
Confidence 5688999876766666554 35899999999999873 466666654
Done!