RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7195
         (134 letters)



>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain. 
          Length = 152

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 17  KAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGG 70
            AP +F + W+++K FL   T  KIH ++         LL+ +  +  P   GG
Sbjct: 101 NAPWIFNVIWKLIKPFLDPKTREKIHFHK---NSNLEELLKYIPPEQLPKEYGG 151


>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
           phosphatidylinositol transfer protein (Sec14p).  Domain
           in homologues of a S. cerevisiae phosphatidylinositol
           transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
           the RasGAP, neurofibromin (NF1). Lipid-binding domain.
           The SEC14 domain of Dbl is known to associate with G
           protein beta/gamma subunits.
          Length = 158

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 17  KAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGG 70
             P  F + W+++K FL E T  KI          +  LLE ++++  P  +GG
Sbjct: 105 NPPWFFRVLWKIIKPFLDEKTREKIRFVG---NDSKEELLEYIDKEQLPEELGG 155


>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
           secretory proteins, such as S. cerevisiae
           phosphatidylinositol transfer protein (Sec14p), and in
           lipid regulated proteins such as RhoGAPs, RhoGEFs and
           neurofibromin (NF1). SEC14 domain of Dbl is known to
           associate with G protein beta/gamma subunits.
          Length = 157

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 17  KAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGG 70
             P  F + W++VK FL E T  KI          +  LL+ ++++  P   GG
Sbjct: 107 NPPWFFKVLWKIVKPFLSEKTRKKIVFLG----SDKEELLKYIDKEQLPEEYGG 156


>gnl|CDD|179585 PRK03511, minC, septum formation inhibitor; Reviewed.
          Length = 228

 Score = 26.9 bits (60), Expect = 3.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 36 YTISKIHLYRAEPAKWRPILLEQMEE 61
          +T+S +HL+ AEP   R  L +++ +
Sbjct: 13 FTLSVVHLHDAEPEVIRQALEDKIAQ 38


>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type.  This
           family consists of glycogen (or starch) synthases that
           use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose
           (EC 2.4.1.11) as in animals, as the glucose donor. This
           enzyme is found in bacteria and plants. Whether the name
           given is glycogen synthase or starch synthase depends on
           context, and therefore on substrate [Energy metabolism,
           Biosynthesis and degradation of polysaccharides].
          Length = 473

 Score = 26.8 bits (60), Expect = 4.4
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 36  YTISK-IHLYRAEPAKWRPILLEQMEEDM-WPAS 67
             +S+ + LYR +P+ W  +    M +D  W  S
Sbjct: 429 AALSRALRLYRQDPSLWEALQKNAMSQDFSWDKS 462


>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional.
          Length = 249

 Score = 26.5 bits (59), Expect = 4.8
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 49  AKWRPILLEQMEEDMWPASMG 69
           AK+ P  LE  +E M+  S  
Sbjct: 91  AKFAP--LEDWDEAMFDRSFN 109


>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated.
          Length = 245

 Score = 26.2 bits (59), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)

Query: 66 ASMGGAGRDPDGNPR 80
          A +GG   DP+GNPR
Sbjct: 36 AKLGGG--DPEGNPR 48


>gnl|CDD|220698 pfam10334, DUF2421, Protein of unknown function (DUF2421).  This is
           a family of proteins conserved in fungi. The function is
           not known.
          Length = 224

 Score = 26.1 bits (58), Expect = 6.5
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 20  KVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQM 59
           ++ TL   +V+       +      R EP  W P LL ++
Sbjct: 87  RLQTLCTDLVQLLGRLLVLLT----RLEPEHWLPRLLRRV 122


>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator.  This is a
          family of transcriptional regulators. In mammals, it
          activates the transcription of mitochondrially-encoded
          COX1. In bacteria, it negatively regulates the
          quorum-sensing response regulator by binding to its
          promoter region.
          Length = 234

 Score = 25.5 bits (57), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 2/15 (13%)

Query: 66 ASMGGAGRDPDGNPR 80
          A MGG   DP+GNPR
Sbjct: 32 AKMGGP--DPEGNPR 44


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,789,374
Number of extensions: 578149
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 12
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)