RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7195
(134 letters)
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 87.7 bits (217), Expect = 1e-21
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 17 KAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPD 76
KAPK+F +A+ ++K FL E T KI + A W+ +LL+ + D P GG DPD
Sbjct: 193 KAPKLFPVAYNLIKPFLSEDTRKKIMVL---GANWKEVLLKHISPDQVPVEYGGTMTDPD 249
Query: 77 GNPRCLTKIPQIGKVPKSMYMKKPIDKSLEENYTQACVKKGEKLSLDFIAPQEGYFLK 134
GNP+C +KI G +P+ Y++ + ++ + +G +++ G L+
Sbjct: 250 GNPKCKSKINYGGDIPRKYYVRDQVK---QQYEHSVQISRGSSHQVEYEILFPGCVLR 304
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 69.5 bits (170), Expect = 3e-15
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 17 KAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPD 76
+P F+ +++VK FL T+SKI + + ++ LL+Q+ + P GG +
Sbjct: 228 HSPFGFSTMFKMVKPFLDPVTVSKIFIL---GSSYKKELLKQIPIENLPVKYGGTSVLHN 284
Query: 77 GNPRCLTKIPQIGKVPKSMYMKKPIDKSL 105
N + + P+ + + I
Sbjct: 285 PNDKFYYSDIGPWRDPRYIGPEGEIPNIF 313
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 67.9 bits (166), Expect = 1e-14
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 17 KAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPD 76
AP F+ A+R+ K FL T+SKI + + ++ LL+Q+ + P GG +
Sbjct: 213 NAPFGFSTAFRLFKPFLDPVTVSKIFIL---GSSYQKELLKQIPAENLPVKFGGKSEVDE 269
Query: 77 GNPRCLTK----------IPQIGKVPK 93
I G+ P+
Sbjct: 270 SKGGLYLSDIGPWRDPKYIGPEGEAPE 296
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 51.3 bits (123), Expect = 7e-09
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 17 KAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPD 76
P FT + VVK FL + ++ ++ + + ++++E++ P+ GG D
Sbjct: 241 HQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSG----FYQEIDENILPSDFGGTLPKYD 296
Query: 77 GNPRC 81
G
Sbjct: 297 GKAVA 301
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 42.3 bits (100), Expect = 9e-06
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 18 APKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPD 76
P +F + ++K FL E +IH++ + L Q D+ P GG +
Sbjct: 183 EPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQ----SLLQHFPDILPLEYGGEEFSME 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.001
Identities = 24/153 (15%), Positives = 39/153 (25%), Gaps = 45/153 (29%)
Query: 1 MTLELCNDSPVCNCQMKAPKVFTLAWRVVKKFLHE-YTISKIHLYRAEP---------AK 50
M ++L S A V+ A + Y S + + P K
Sbjct: 1631 MGMDLYKTSKA------AQDVWNRA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 51 WRPI--LLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPIDKSLEE- 107
+ I M + DG + +I + S + L
Sbjct: 1681 GKRIRENYSAMIFET----------IVDGKLKTEKIFKEINEHSTSYTFRSEKGL-LSAT 1729
Query: 108 NYTQ--------ACVKKGEKLSLDFIAPQEGYF 132
+TQ A E L + P + F
Sbjct: 1730 QFTQPALTLMEKAAF---EDLKSKGLIPADATF 1759
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.60
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 24/68 (35%)
Query: 5 LCNDSPVCNCQMKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMW 64
L ND+ V K R L Y + L PAK +L++
Sbjct: 119 LYNDNQV------FAKYNV--SR-----LQPYLKLRQALLELRPAKN--VLID------- 156
Query: 65 PASMGGAG 72
+ G+G
Sbjct: 157 --GVLGSG 162
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.5
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 8/27 (29%)
Query: 29 VKKFLHEYTISKIHLYRAEPAKWRPIL 55
+KK + + + LY + A P L
Sbjct: 22 LKKL--Q---ASLKLYADDSA---PAL 40
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability,
structural genomics, BSGC structure funded by NIH,
protein structure initiative, PSI; 1.72A {Aquifex
aeolicus} SCOP: e.39.1.1
Length = 249
Score = 25.2 bits (56), Expect = 7.4
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 66 ASMGGAGRDPDGNPR 80
+GG +P+ NPR
Sbjct: 36 TRLGGP--NPEFNPR 48
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston
bacterial structural genomics initiative, BSGI,
structural genomics; 2.20A {Escherichia coli} SCOP:
e.39.1.1
Length = 249
Score = 25.2 bits (56), Expect = 7.7
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 66 ASMGGAGRDPDGNPR 80
A +GG DPD NPR
Sbjct: 39 AKLGGG--DPDANPR 51
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 25.0 bits (55), Expect = 8.8
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 11/38 (28%)
Query: 95 MYMKK----P-------IDKSLEENYTQACVKKGEKLS 121
YMKK P IDKS EN +
Sbjct: 164 FYMKKLAAPPAAKGHVDIDKSATENLKILSDCLNRSIE 201
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
e.39.1.1
Length = 240
Score = 24.8 bits (55), Expect = 8.8
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 66 ASMGGAGRDPDGNPR 80
A GG+ +PD N +
Sbjct: 34 AKDGGS--EPDTNAK 46
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A
{Coxiella burnetii}
Length = 247
Score = 24.8 bits (55), Expect = 8.9
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 66 ASMGGAGRDPDGNPR 80
A +GG D D NPR
Sbjct: 39 ARLGGE--DIDSNPR 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.431
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,077,519
Number of extensions: 111839
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 15
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)