RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7195
         (134 letters)



>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 75.5 bits (185), Expect = 2e-18
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 16  MKAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDP 75
           +KAPK+F +A+ ++K FL E T  KI +  A    W+ +LL+ +  D  P   GG   DP
Sbjct: 117 VKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA---NWKEVLLKHISPDQVPVEYGGTMTDP 173

Query: 76  DGNPRCLTKIPQIGKVPKSMYMKKPI 101
           DGNP+C +KI   G +P+  Y++  +
Sbjct: 174 DGNPKCKSKINYGGDIPRKYYVRDQV 199


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 19  PKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGN 78
           P  F+ A+R+ K FL   T+SKI +     + ++  LL+Q+  +  P   GG     +  
Sbjct: 122 PFGFSTAFRLFKPFLDPVTVSKIFIL---GSSYQKELLKQIPAENLPVKFGGKSEVDESK 178

Query: 79  PRCLT------KIPQI----GKVPK 93
                      + P+     G+ P+
Sbjct: 179 GGLYLSDIGPWRDPKYIGPEGEAPE 203


>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 298

 Score = 26.7 bits (58), Expect = 0.93
 Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 18/127 (14%)

Query: 26  WRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGA-------------- 71
                +        +         K     + +  E+   + +G                
Sbjct: 97  MNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVGEDLYQALIKGYTEKQW 156

Query: 72  GRDPDGNPRCLTKIPQIGKVPKSMYMKKPIDKSLEENYTQACVK----KGEKLSLDFIAP 127
           GR     P  + K   +     + Y            YT+   K       KL +DF+  
Sbjct: 157 GRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLKD 216

Query: 128 QEGYFLK 134
           ++    K
Sbjct: 217 KDSLASK 223


>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
           botulinum, serotype B [TaxId: 1491]}
          Length = 533

 Score = 25.2 bits (55), Expect = 3.2
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 72  GRDPDGNPRCLTKIPQIGKVPKSMYMKKPID 102
           G++   N +   +I +       + M K + 
Sbjct: 410 GQNKAINKQAYEEISKEHLAVYKIQMCKSVK 440


>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 82

 Score = 24.0 bits (51), Expect = 3.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 49 AKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVP 92
          A+ RP+++ + E+     +  G GRDPD   R L +I  + ++P
Sbjct: 23 ARDRPVVVTK-EDLTQRLTEAGCGRDPDSAIRELRRIGWLVQLP 65


>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
           [TaxId: 1314]}
          Length = 208

 Score = 24.3 bits (52), Expect = 5.9
 Identities = 1/23 (4%), Positives = 10/23 (43%)

Query: 30  KKFLHEYTISKIHLYRAEPAKWR 52
           + ++    +  +  ++ +   W+
Sbjct: 186 QGYITNDGLHLLKKFKEDQVNWQ 208


>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase
           {Bacteriophage T7 [TaxId: 10760]}
          Length = 109

 Score = 23.5 bits (50), Expect = 6.8
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 57  EQMEE------DMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPIDKSLEE 107
             M+E      +   +  G       G+    T  P  G   +  YM++  D SL  
Sbjct: 46  ALMDEFTETVKEATLSQWGFFSPYGIGDNDACTINPYDGWACQISYMEETPDGSLRH 102


>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 23.1 bits (50), Expect = 6.8
 Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 12 CNCQMKAPKVFTLAWRVVKKFLHEYTISKIH 42
             +++     + AW+ + + L    +S+I 
Sbjct: 20 SLEEIQDV---SCAWKELNRKLSSNAVSQIT 47


>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
           pylori [TaxId: 210]}
          Length = 220

 Score = 23.9 bits (51), Expect = 7.9
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 66  ASMGGAGRDPDGNPRCLTKIPQIGK--VPK-----SMYMKKPIDKSLEENYTQACVKKGE 118
           A  GG+  +PD N +  T I       +PK     ++      + +L E   +     G 
Sbjct: 14  AKDGGS--EPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGV 71

Query: 119 KLSLDFIAPQ 128
            + ++ +   
Sbjct: 72  LIIMECMTDN 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 531,633
Number of extensions: 23281
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 13
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)