Query psy7197
Match_columns 488
No_of_seqs 294 out of 1774
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:38:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3646|consensus 100.0 1E-85 2.2E-90 660.3 9.2 406 2-462 73-485 (486)
2 TIGR00860 LIC Cation transport 100.0 1.5E-71 3.2E-76 588.7 13.5 380 2-457 76-458 (459)
3 KOG3645|consensus 100.0 1.9E-68 4E-73 563.3 8.5 371 2-445 76-449 (449)
4 KOG3643|consensus 100.0 6.2E-49 1.3E-53 393.6 7.5 238 2-251 80-323 (459)
5 KOG3644|consensus 100.0 1.5E-44 3.2E-49 376.5 4.8 240 2-251 87-332 (457)
6 KOG3642|consensus 100.0 4.9E-42 1.1E-46 346.1 8.9 237 2-251 89-331 (466)
7 PF02931 Neur_chan_LBD: Neurot 100.0 4.1E-32 8.8E-37 260.5 7.0 169 2-171 47-217 (217)
8 PF02932 Neur_chan_memb: Neuro 100.0 4.1E-36 8.8E-41 282.7 -27.0 232 178-454 1-236 (237)
9 PF02932 Neur_chan_memb: Neuro 84.0 0.059 1.3E-06 49.7 -5.0 32 220-251 44-75 (237)
10 TIGR00860 LIC Cation transport 66.8 0.94 2E-05 48.6 -2.3 31 221-251 291-321 (459)
11 PF13721 SecD-TM1: SecD export 32.1 13 0.00027 31.3 -0.5 35 439-473 5-39 (101)
12 KOG3644|consensus 29.2 5 0.00011 43.0 -4.2 56 233-289 286-341 (457)
13 PF14494 DUF4436: Domain of un 22.9 51 0.0011 32.6 1.8 20 81-100 96-116 (256)
14 PRK13743 conjugal transfer pro 22.8 30 0.00064 30.2 0.1 31 414-453 24-54 (141)
No 1
>KOG3646|consensus
Probab=100.00 E-value=1e-85 Score=660.26 Aligned_cols=406 Identities=42% Similarity=0.774 Sum_probs=336.3
Q ss_pred CCCccceeeeeecceeecCCCCCCCeeEEeeCCCccccccEEEEecCCCceEEEEEeeeeeeeeeeEEecCCeeeeccce
Q psy7197 2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCE 81 (488)
Q Consensus 2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~~~~IW~Pdi~l~N~~~~~~~~~~~~~v~V~~~G~V~~~~~~~~~~~C~ 81 (488)
+.+|.|++++|+|.+|+|||++||||+.+++|.++||+||+.+||+++++|+.+..+++.+++||.|.|.+|.+++++|.
T Consensus 73 l~~naWl~y~W~D~~LrW~pseygnI~dvR~p~~~iWkPDVLLYNSade~FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCk 152 (486)
T KOG3646|consen 73 LSVNAWLQYQWNDYKLRWDPSEYGNITDIRFPGGNIWKPDVLLYNSADEQFDSTYKTNYVVYSTGSVLWVPPGIFKSSCK 152 (486)
T ss_pred hhhhhhhheeehhhhhccCHHHhCCceeeccCCccccCCceeccccccccCCCcceeeEEEccCCeeeecCCceeeeeeE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeeeeecceeecceeeeeeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCCCeeee
Q psy7197 82 IDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDI 161 (488)
Q Consensus 82 ~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~~ys~i 161 (488)
+|+++||||.|.|.++||||+|++..++|+..... .++|++.|..||||++.+.++.+.+.+|.||+++|.++
T Consensus 153 iDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~-------g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv 225 (486)
T KOG3646|consen 153 IDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDED-------GGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDV 225 (486)
T ss_pred EEEEEecccccEEEEEeeeEEEcceeeeeeecccc-------CCcchhhcccCCceeeccccccceeeecccCCCCccee
Confidence 99999999999999999999999999999876552 24799999999999999999999999999999999999
Q ss_pred EEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCCCCCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhhhhhhhh
Q psy7197 162 TFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSL 241 (488)
Q Consensus 162 ~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~s~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~~~~~~~ 241 (488)
+|++++|||.+||.+|+++||++++++++++|-+|+|+|||+++++|++|+..+|
T Consensus 226 ~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~F------------------------- 280 (486)
T KOG3646|consen 226 TFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCFF------------------------- 280 (486)
T ss_pred EEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEeecCCCeeeeccchhhhhHHhhhcceeeEEEEEEEeeeecCCcccccchhhhhHHhhhccceecccCCCccC
Q psy7197 242 TVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDR 321 (488)
Q Consensus 242 ~~ill~l~e~lP~tS~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~ 321 (488)
+.+++|..|+||+++|+||.||.+||+++++|+++||+|+|+|||+|.+|.|++|.|++|+.|+|++|+|+||....
T Consensus 281 ---L~mvse~~PpTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~~~~ 357 (486)
T KOG3646|consen 281 ---LTMVSEMTPPTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPFILR 357 (486)
T ss_pred ---HHHHHhhcCCccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999993332
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCC-CCC-Ccc-C-CCCCCChhhhhhccceeee
Q psy7197 322 NKRDMDPSQHQSTCKVHGTPTRPPGDLPLD---DIESEPLDPLPPPIPPL-PPM-KKV-S-HHWHLCPELHKAIAGVRFI 394 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~-~~~-~-~~~~~~~~l~~~~~~v~~I 394 (488)
....+...+..+.+...+. .+.......+ .++....+...+..... .+. ++. . .......+++.+.+.++.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 436 (486)
T KOG3646|consen 358 RTHPSLRMKELDRKLKRGE-HKSAEANGLDGFDLFNQRVSQSLTPRGRTASLPVISEHVSTATQFILKELHLILKELRAI 436 (486)
T ss_pred cCCchhhhhhhhhhccccc-ccchhhhccccccCCCccccCCCCCcccccCCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2221100000000000000 0000000000 01100000000000000 000 000 0 0001124678888999999
Q ss_pred cccccccccccccccccccccccCCCcccCCCCCCccchhhhHHHHHHHHHHhhhcccceEEecCccc
Q psy7197 395 ADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLY 462 (488)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~~~~~~t~~i~l~~~~~~ 462 (488)
.++++++++++++.+ |||| +|||+||+||++|+++++++ +|++.+|++.
T Consensus 437 ~~r~~~~~~~~~~~~---------dWkF--------AAmvVDRlCL~~Fs~fiii~--~i~~~~p~l~ 485 (486)
T KOG3646|consen 437 LDRMEEDDKEEALQS---------DWKF--------AAMVVDRLCLLAFSVFIVMC--GILLSAPHLV 485 (486)
T ss_pred HHHhhhhhHHHHHHh---------hhhH--------HHHHHHHHHHHHHHHHHHHH--HHhhcCCccC
Confidence 999999888888888 9999 99999999999999999988 8899999875
No 2
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=1.5e-71 Score=588.73 Aligned_cols=380 Identities=27% Similarity=0.468 Sum_probs=314.4
Q ss_pred CCCccceeeeeecceeecCCCCCCCeeEEeeCCCccccccEEEEecCCCceEEEEEeeeeee--eeeeEEecCCeeeecc
Q psy7197 2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLN--YTGRVEWKPPAIYKSS 79 (488)
Q Consensus 2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~~~~IW~Pdi~l~N~~~~~~~~~~~~~v~V~--~~G~V~~~~~~~~~~~ 79 (488)
+++++|++|+|+|+||+|||++|+|++.++++.++||+||++++|++++.++....+++.|. +||+|.|.+|+++++.
T Consensus 76 ~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~ 155 (459)
T TIGR00860 76 YTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLA 155 (459)
T ss_pred EEEeeeeeeEEeCCccCCCCccCCCceeccccccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEec
Confidence 56899999999999999999999999999999999999999999999988776555565554 5999999999999999
Q ss_pred ceeeeeeeccCcceeeeeecceeecceeeeeeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCCCee
Q psy7197 80 CEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYL 159 (488)
Q Consensus 80 C~~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~~ys 159 (488)
|+||+++||||+|+|+++||||+|+++++++.+..+. ....+.+.|..++||++.+....+.. .+.||+++|+
T Consensus 156 C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~~------~v~~~~~~~~~~~eW~l~~~~~~~~~-~~~~~~~~y~ 228 (459)
T TIGR00860 156 CPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQG------AVQVDDSLFISLPEFELLGVYGTRYC-TSETNTGEYP 228 (459)
T ss_pred ccceeccCCCCCccccEEEhhhccccceEEEEECCCC------ceEechhhccccCceEEEeeeeeeeE-ecccCCCCcC
Confidence 9999999999999999999999999999999885441 12356677889999999997766665 6888999999
Q ss_pred eeEEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCC-CCCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhhhhh
Q psy7197 160 DITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSD-SGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISIL 238 (488)
Q Consensus 160 ~i~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~-s~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~~~~ 238 (488)
+++|+++++|+++||++++++||+++++++|++||+|++ +++|+++++|++|++++|
T Consensus 229 ~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf---------------------- 286 (459)
T TIGR00860 229 CLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTF---------------------- 286 (459)
T ss_pred eEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHH----------------------
Confidence 999999999999999999999999999999999999999 699999999999999999
Q ss_pred hhhceeeeeEEeecCCCeeeeccchhhhhHHhhhcceeeEEEEEEEeeeecCCcccccchhhhhHHhhhccceecccCCC
Q psy7197 239 LSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQ 318 (488)
Q Consensus 239 ~~~~~ill~l~e~lP~tS~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~ 318 (488)
+..+++.+|++| .+|+||+|+.+||+++++|++++++|+|+|||++.+|+ |++|++++|+++||++|.
T Consensus 287 ------~~~v~~~lP~~S-~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~~~~~~-----r~~~l~~l~~~l~~~~~~ 354 (459)
T TIGR00860 287 ------SSGVRESLPAVS-YVKAIDVYFAVCMAFVFLALLETAFVNYVHHKDPAQGK-----RHLLLERCAWRLCKQEPG 354 (459)
T ss_pred ------HHHHHhhCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHhheeEEccCCCCCc-----eehHHhhchHHhcccCcc
Confidence 888899999998 99999999999999999999999999999999998875 999999999999999997
Q ss_pred ccCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCChhhhhhccceeeecccc
Q psy7197 319 YDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHT 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~I~~~~ 398 (488)
.+....... .......+. .......+ .+.+ .+ . ... ..........++++++.+++++| +|+
T Consensus 355 ~~~~~~~~~----~~~~~~~~~-~~~~~~~~---~~~~-~~--~----~~~--~~~~~~~~~~~~~~~~~~~~~~i-~~~ 416 (459)
T TIGR00860 355 EDYRRPALD----HASLSSVEM-RAKDGGRG---LESP-TE--R----QRL--LHSPPPAEGDLDLAGILEEVRIA-HRF 416 (459)
T ss_pred ccccccccc----ccccchhcc-cccccccc---cCCc-cc--c----ccc--CCCCCccccCHHHHHHHhhhhHH-HHH
Confidence 533211100 000000000 00000000 1000 00 0 000 00001111347899999999999 999
Q ss_pred cccccccccccccccccccCCCcccCCCCCCccchhhhHHHHHHHHHHhhhcccceEEe
Q psy7197 399 KTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQ 457 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~~~~~~t~~i~l~ 457 (488)
+++++.++.++ |||+ +|+|+||+|||+|.+++++||+++++.
T Consensus 417 ~~~~~~~~~~~---------~W~~--------~a~viDr~~~~~f~~~~~~~~~~~~~~ 458 (459)
T TIGR00860 417 RKRDESEEVVR---------DWKF--------RAKVIDKLSRMAFPLAFLLFNIGYWMS 458 (459)
T ss_pred Hhhhhhhcccc---------hhhh--------ccchhhHHHHHHHHHHHHHhhhhheEe
Confidence 99999999999 9999 999999999999999999999999863
No 3
>KOG3645|consensus
Probab=100.00 E-value=1.9e-68 Score=563.29 Aligned_cols=371 Identities=54% Similarity=0.965 Sum_probs=314.3
Q ss_pred CCCccceeeeeecceeecCCCCCCCeeEEeeCCCccccccEEEEecCCCceEEEEEeeeeeeeeeeEEecCCeeeeccce
Q psy7197 2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCE 81 (488)
Q Consensus 2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~~~~IW~Pdi~l~N~~~~~~~~~~~~~v~V~~~G~V~~~~~~~~~~~C~ 81 (488)
.++++++.++|+|+||+|||++|||++.+++|.++||+||++++|++++++.....+++.++++|+|.|.+|+.++++|+
T Consensus 76 ~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~~~~~~v~v~~~G~V~~~~p~i~~s~C~ 155 (449)
T KOG3645|consen 76 MTTNVWLKQSWTDERLSWDPSDYGGITKIRVPSSKIWLPDIVLYNNADGDFEVEDLTNVLVTYTGEVLWYPPAIYKSSCP 155 (449)
T ss_pred EEEEEEeeeEEeccCcccChHHcCCceEEEecHHHcCcCcEEEEecccccccccccceEEEEECCEEEEEcceEEEeecc
Confidence 35789999999999999999999999999999999999999999999999888777889999999999999999999999
Q ss_pred eeeeeeccCcceeeeeecceeecceeee-eeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCCCeee
Q psy7197 82 IDVEYFPFDEQTCVMKFGSWTYDGFQVD-LRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLD 160 (488)
Q Consensus 82 ~dl~~FPFD~Q~C~l~f~S~~y~~~~v~-l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~~ys~ 160 (488)
+|+++||||.|+|.++||||+|++++++ +...... ...++++|.+|+||++.+.+..+....|.|+++.|++
T Consensus 156 idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~-------~~~~~~~~~~n~eW~l~~~~~~~~~~~~~~~~~~~~~ 228 (449)
T KOG3645|consen 156 IDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQT-------IEVDLSDFIENSEWELLSVTVVREEKKYDCCPGPYSD 228 (449)
T ss_pred cccccCCCcceeEeEEEeccccCccccceeeecccc-------ccCCHHHcCCCCcEEEEeeeeEEeecccCCCCCceeE
Confidence 9999999999999999999999999876 4333220 0168889999999999999999988888888999999
Q ss_pred eEEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCCCC-CeeEEEEeeeeehhhhhhhhcccCCCCcccchhhhhhhh
Q psy7197 161 ITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSG-EKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILL 239 (488)
Q Consensus 161 i~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~s~-eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~~~~~ 239 (488)
++|++++||+|.||++++++||++++++++++||+|.+++ ||+++++|+||++++|
T Consensus 229 i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~----------------------- 285 (449)
T KOG3645|consen 229 ITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVF----------------------- 285 (449)
T ss_pred EEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHH-----------------------
Confidence 9999999999999999999999999999999999998876 9999999999999999
Q ss_pred hhceeeeeEEeecCCCeeeeccchhhhhHHhhhcceeeEEEEEEEeeeecCCccc-ccchhhhhHHhhhccceecccCCC
Q psy7197 240 SLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTH-VMSPWVKKVFIHLLPKLLVMRRPQ 318 (488)
Q Consensus 240 ~~~~ill~l~e~lP~tS~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r~~~~~-~~p~w~r~~~l~~l~~~l~~~~p~ 318 (488)
++++++.+|+||..+|+||+|++++|+++++|++++++++|+|+|++.++ ++|.|++++|++.+|+.++|+++.
T Consensus 286 -----ll~vs~~~P~ts~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (449)
T KOG3645|consen 286 -----LLLVSDKMPPTSSVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRSPTTHPPMPPWVRRVFLEKLPRLLLMSRPE 360 (449)
T ss_pred -----HHHHHhhcCCccCcchHHHHHHHHHHHHHHHHHHHheeEEeeecccCCCCCCCchHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999988999999999999999999999999999999999998 899999999999999999999987
Q ss_pred ccCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCChhhhhhccceeeecccc
Q psy7197 319 YDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHT 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~I~~~~ 398 (488)
+...... . ................+..+. . ..... .....+.++++++.+++++|++++
T Consensus 361 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 419 (449)
T KOG3645|consen 361 DELQVSR--L-IVLGISVKLFKITKSLGSIPV--F---------------SSADP-LLSPELSPELRKAIEGVDFIAEHL 419 (449)
T ss_pred ccccccc--c-ccccccccccccccccccccc--c---------------ccccc-cccccccHHHHHHHHHHHHHHHHH
Confidence 6111000 0 000000000000000000000 0 00000 000115688999999999999999
Q ss_pred cccccccccccccccccccCCCcccCCCCCCccchhhhHHHHHHHHH
Q psy7197 399 KTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTL 445 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~ 445 (488)
+.+++.++.++ ||++ +|+|+||+|||+|++
T Consensus 420 ~~~~~~~~~~~---------~w~~--------va~v~dr~~l~~f~~ 449 (449)
T KOG3645|consen 420 KSEDNFQEIRE---------DWKY--------VAMVLDRLLLWIFLI 449 (449)
T ss_pred HhHHHHhhhhH---------HHHH--------HHHHHHHHhhheEeC
Confidence 99999999999 9999 999999999999863
No 4
>KOG3643|consensus
Probab=100.00 E-value=6.2e-49 Score=393.57 Aligned_cols=238 Identities=22% Similarity=0.416 Sum_probs=211.2
Q ss_pred CCCccceeeeeecceeecCCCCCCCeeEEeeCC---CccccccEEEEecCCCceEEE-EEe-eeeeeeeeeEEecCCeee
Q psy7197 2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPS---DHIWRPDIVLYNNADGNFEVT-LAT-KATLNYTGRVEWKPPAIY 76 (488)
Q Consensus 2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~~---~~IW~Pdi~l~N~~~~~~~~~-~~~-~v~V~~~G~V~~~~~~~~ 76 (488)
|+...|++|.|+||||+|+ .++++.+.++. ++||.||.++-|++.+.++.. ..+ -+++++||+|.+..|++.
T Consensus 80 yTlt~y~rq~W~D~RLay~---~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~ 156 (459)
T KOG3643|consen 80 YTLTMYLRQTWRDPRLAYS---SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTV 156 (459)
T ss_pred hhhhhhhhhhhcCcccccC---CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEE
Confidence 5678899999999999999 45778888874 899999999999998888743 333 379999999999999999
Q ss_pred eccceeeeeeeccCcceeeeeecceeecceeeeeeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCC
Q psy7197 77 KSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDE 156 (488)
Q Consensus 77 ~~~C~~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~ 156 (488)
+..|+||+++||+|+|+|+|.++||+|+.+++.+.|..++. .....+.+.+++| .+.+.........++ .|
T Consensus 157 Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~-av~~~e~i~LpqF------ti~~~~~~s~~~~~s--TG 227 (459)
T KOG3643|consen 157 TAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDN-AVKGDEKIELPQF------TITEYHVTSRLVSFS--TG 227 (459)
T ss_pred EEecccccccCCCcccceeEEEEecccccccEEEEEcCCCc-cccceeeeeccce------EEEEEEEEEEEEEEc--cc
Confidence 99999999999999999999999999999999999987533 2222234566666 566666665555555 68
Q ss_pred CeeeeEEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCCC-CCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhh
Q psy7197 157 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDS-GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSI 235 (488)
Q Consensus 157 ~ys~i~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~s-~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~ 235 (488)
.|+.+..+|.++|+.+||++++++|+++++++||++||+..|+ ++|+.+|||++|+|++...+.+++||+|||++++|+
T Consensus 228 ~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDi 307 (459)
T KOG3643|consen 228 NYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDV 307 (459)
T ss_pred cceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehh
Confidence 9999999999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred hhhhhhceeeeeEEee
Q psy7197 236 SILLSLTVFFLLLAEI 251 (488)
Q Consensus 236 ~~~~~~~~ill~l~e~ 251 (488)
|+.+||.|+|+.+.|+
T Consensus 308 YL~vCFvfVF~sLLEY 323 (459)
T KOG3643|consen 308 YLGVCFVFVFLSLLEY 323 (459)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999999997
No 5
>KOG3644|consensus
Probab=100.00 E-value=1.5e-44 Score=376.55 Aligned_cols=240 Identities=21% Similarity=0.368 Sum_probs=205.8
Q ss_pred CCCccceeeeeecceeecCC-C-CCCCeeEEeeC-CCccccccEEEEecCCCceEEEEEee--eeeeeeeeEEecCCeee
Q psy7197 2 YHSLPLCSQSWYDYKLTWDP-K-EYGGVEMLHVP-SDHIWRPDIVLYNNADGNFEVTLATK--ATLNYTGRVEWKPPAIY 76 (488)
Q Consensus 2 ~~~~~~l~~~W~D~rL~Wnp-~-~y~~i~~i~l~-~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~V~~~G~V~~~~~~~~ 76 (488)
|.++++++|+|.||||+.+. + ++.+.-...+. .++||.||++|.|++.+.+|.....+ +.|++||+|.+..|+..
T Consensus 87 f~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l 166 (457)
T KOG3644|consen 87 FEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISL 166 (457)
T ss_pred EEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEE
Confidence 56889999999999999983 3 33222222222 25799999999999999988655444 69999999999999999
Q ss_pred eccceeeeeeeccCcceeeeeecceeecceeeeeeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCC
Q psy7197 77 KSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDE 156 (488)
Q Consensus 77 ~~~C~~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~ 156 (488)
+.+|+||+.+||+|+|+|.+.++||+|+.++|++.|.+.. +.....++.+.+| ++.+.........|+ .|
T Consensus 167 ~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~--pv~~~~~i~LPdf------~l~~~~~~~~~~~y~--~G 236 (457)
T KOG3644|consen 167 TLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWN--PVQVKKDIKLPDF------SLPSFSTEKCTGSYT--TG 236 (457)
T ss_pred eeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCC--CcccccCccCCce------eccceeecccccccc--Cc
Confidence 9999999999999999999999999999999999998864 2222333444444 566655555555565 78
Q ss_pred CeeeeEEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCCC-CCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhh
Q psy7197 157 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDS-GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSI 235 (488)
Q Consensus 157 ~ys~i~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~s-~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~ 235 (488)
.|++++++++++|+.+||+++.++|+.+++++||++|||++++ ++|++||+|.||++++....++..||+|||++|+|+
T Consensus 237 ~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VSYvKAIDV 316 (457)
T KOG3644|consen 237 VYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVSYVKAIDV 316 (457)
T ss_pred ceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhcCCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred hhhhhhceeeeeEEee
Q psy7197 236 SILLSLTVFFLLLAEI 251 (488)
Q Consensus 236 ~~~~~~~~ill~l~e~ 251 (488)
|+++|++|+|+.+.|.
T Consensus 317 Wm~~C~~FIF~sLlE~ 332 (457)
T KOG3644|consen 317 WMGVCMTFIFGSLLEL 332 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 6
>KOG3642|consensus
Probab=100.00 E-value=4.9e-42 Score=346.06 Aligned_cols=237 Identities=22% Similarity=0.434 Sum_probs=203.5
Q ss_pred CCCccceeeeeecceeecCCCCCCCeeEEeeC---CCccccccEEEEecCCCceEEEE-Eee-eeeeeeeeEEecCCeee
Q psy7197 2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVP---SDHIWRPDIVLYNNADGNFEVTL-ATK-ATLNYTGRVEWKPPAIY 76 (488)
Q Consensus 2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~---~~~IW~Pdi~l~N~~~~~~~~~~-~~~-v~V~~~G~V~~~~~~~~ 76 (488)
|..+++++|.|.|+||++| +-.+.+.+. .++||+||.++.|++++..|... .++ ++|..||+|.|..+.+.
T Consensus 89 ytid~~FrQ~W~D~RL~f~----~~~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi 164 (466)
T KOG3642|consen 89 YTIDCFFRQTWVDDRLKFN----GPQEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTI 164 (466)
T ss_pred EEEEEEEEEeehhhhhccc----CcchhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEee
Confidence 6789999999999999998 233445544 38999999999999998777433 233 79999999999999999
Q ss_pred eccceeeeeeeccCcceeeeeecceeecceeeeeeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCC
Q psy7197 77 KSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDE 156 (488)
Q Consensus 77 ~~~C~~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~ 156 (488)
.+.|+|++.+||+|.|.|.++|||++|+.+|+.+.|... .. .++-++.....+.++.+....... .....+
T Consensus 165 ~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~--~V-----eV~~~~~~~L~Qf~l~g~~~~te~--i~t~~g 235 (466)
T KOG3642|consen 165 PAECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKR--SV-----EVNETDSWSLDQFDLLGVSVGTED--IKTSSG 235 (466)
T ss_pred cccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecc--cE-----EEcCCCCccccceeeecccccccc--eEecCC
Confidence 999999999999999999999999999999999999765 11 122222223344577777655443 334478
Q ss_pred CeeeeEEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCCC-CCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhh
Q psy7197 157 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDS-GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSI 235 (488)
Q Consensus 157 ~ys~i~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~s-~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~ 235 (488)
.|+.+++.|+|+|+-+||++++++||++.++|+|++||+..++ ++|.+||||.+|+|+++...++.++|+|+|.||||+
T Consensus 236 ey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~ 315 (466)
T KOG3642|consen 236 EYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDV 315 (466)
T ss_pred CEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccccchhHHH
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred hhhhhhceeeeeEEee
Q psy7197 236 SILLSLTVFFLLLAEI 251 (488)
Q Consensus 236 ~~~~~~~~ill~l~e~ 251 (488)
|+++||+|+|.++.|.
T Consensus 316 fIavCf~FvFsaliEf 331 (466)
T KOG3642|consen 316 FIAVCFIFVFAALVEF 331 (466)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888886
No 7
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.97 E-value=4.1e-32 Score=260.50 Aligned_cols=169 Identities=36% Similarity=0.782 Sum_probs=142.3
Q ss_pred CCCccceeeeeecceeecCCCCCCCeeEEeeCCCccccccEEEEecCCCceEEE-EEeeeeeeeeeeEEecCCeeeeccc
Q psy7197 2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVT-LATKATLNYTGRVEWKPPAIYKSSC 80 (488)
Q Consensus 2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~~~~IW~Pdi~l~N~~~~~~~~~-~~~~v~V~~~G~V~~~~~~~~~~~C 80 (488)
++++++++++|+|+||+|||++|+|++.+.++.++||+||++++|..++..... ....+.|++||+|.+..++.+++.|
T Consensus 47 ~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~~~~iW~P~l~~~n~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C 126 (217)
T PF02931_consen 47 FTVDGFIRLSWKDPRLKWNPSDYGGIESIRVPSSQIWTPDLYFYNSVSGSFEITEPNSNVRVYSDGTVRYSPRFTLTFSC 126 (217)
T ss_dssp EEEEEEEEEEEEECCGE-STTTTTTESEEEEEGGGS----EEETTBSSSEEECS-SSEEEEEETTSEEEEEEEEEEEEEE
T ss_pred hhhhhhhceeccccccccChhhccCcccccccccceEecccccccccccceecccccccccccccchheeeecccccccc
Confidence 467899999999999999999999999999999999999999999666554433 2357999999999999999999999
Q ss_pred eeeeeeeccCcceeeeeecceeecceeeeeeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCCC-ee
Q psy7197 81 EIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEP-YL 159 (488)
Q Consensus 81 ~~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~~-ys 159 (488)
+||+.+||||+|+|.++|+||.|+..++.+.+..... ........+++.|..++||++.+.........+.++.+. |+
T Consensus 127 ~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~~~~~~~~~~~ys 205 (217)
T PF02931_consen 127 PMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWENKNP-PIDENDEVSLSDFVSNSEWKIVSVTSTRRETTYGCYNEPTYS 205 (217)
T ss_dssp CETTTSSSSSEEEEEEEEEESSSSTTTEEEEESCSSS--TTSSTTTSCTTCETTSSEEEEEEEEEEEEEEESTSSSCSEE
T ss_pred cccccccccccceeEEEEecccccccceeeeecccCc-eeeeeccccHHHccccceEEEEeeEEEEEEEccCCcCCCCEe
Confidence 9999999999999999999999999999999876421 011123467888999999999998888887778888887 99
Q ss_pred eeEEEEEeeeee
Q psy7197 160 DITFNITMRRKT 171 (488)
Q Consensus 160 ~i~~~~~L~R~~ 171 (488)
.+.++|+|+|+|
T Consensus 206 ~l~~~~~l~R~~ 217 (217)
T PF02931_consen 206 MLSFTFTLKRRP 217 (217)
T ss_dssp EEEEEEEEEEST
T ss_pred eEEEEEEEEECc
Confidence 999999999986
No 8
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.97 E-value=4.1e-36 Score=282.73 Aligned_cols=232 Identities=35% Similarity=0.622 Sum_probs=133.9
Q ss_pred eeccccccceeeeEEEEccCCCC-CeeEEEEeeeeehhhhhhhhcccCCCCcccchhhhhhhhhhceeeeeEEeecCCCe
Q psy7197 178 LIIPCMGISFLTILVFYLPSDSG-EKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTS 256 (488)
Q Consensus 178 lilP~ili~~ls~~sF~Lp~~s~-eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~~~~~~~~~ill~l~e~lP~tS 256 (488)
+++||+++++++|++||+|++++ ||+++|||+||++++| +..+++.+|++|
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~----------------------------~~~~~~~lP~~s 52 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVF----------------------------LLMVAENLPPTS 52 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHH----------------------------Hhhhhhhhcccc
Confidence 47999999999999999999997 9999999999999999 777788888888
Q ss_pred eeeccchhhhhHHhhhcceeeEEEEEEEeeeecCCcccccchhhhhHHhhhccceecccCCCccCCCCCCCcc-cccccc
Q psy7197 257 LVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPS-QHQSTC 335 (488)
Q Consensus 257 ~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~-~~~~~~ 335 (488)
..+|++|.|+.++|+++++++..+++++|+|+|++..+++|+|+|+++++++|+++||++|............ ......
T Consensus 53 ~~~pl~~~~~~~~~~v~~~~~~~avv~~~~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 132 (237)
T PF02932_consen 53 YAKPLDGWYFICTMFVFSASLEFAVVVYNIHHRGPRTRPMPPWVRRLFLEKLARLLCMKRPSEKERKPASSQESRSRSSS 132 (237)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-S-----------------------------------------
T ss_pred cccchhhhhccccchhhhHHHHhhhhhhhhcccccccccccchhHHHHhhhhhhhhhhcccccccccccccccccccccc
Confidence 8899999999999999999999999999999999988999999999999999999999999765443321110 000000
Q ss_pred ccCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCChhhhhhccceeeeccccccccccccccccccc
Q psy7197 336 KVHGT-P-TRPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVE 413 (488)
Q Consensus 336 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~I~~~~~~~~~~~~~~~~~~~ 413 (488)
..... . ...........-.+..........................+.++++.++++++++++++++++++.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~---- 208 (237)
T PF02932_consen 133 SSRKESETDKDPSQSQSSSNSSSSSQNSPNSRSSSSSSSNSSSEQSLSPSLRRILEGVRFIAEHLREQDEEEEIKE---- 208 (237)
T ss_dssp ---------------------------------------SS---TTGGG----HHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccHHHhhhhcccceeecccccccccccccc----
Confidence 00000 0 00000000000000000000000000000111112223346788889999999999999999999999
Q ss_pred ccccCCCcccCCCCCCccchhhhHHHHHHHHHHhhhcccce
Q psy7197 414 RSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGI 454 (488)
Q Consensus 414 ~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~~~~~~t~~i 454 (488)
||++ +|+|+||+|+|+|.++++++++++
T Consensus 209 -----ew~~--------~A~viDR~~~~~F~i~f~~~~i~y 236 (237)
T PF02932_consen 209 -----EWKF--------VAMVIDRLFRILFPIAFILFNIVY 236 (237)
T ss_dssp -----HHHS--------TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccc--------cHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999 999999999999999999998875
No 9
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=83.98 E-value=0.059 Score=49.71 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=27.8
Q ss_pred hcccCCCCcccchhhhhhhhhhceeeeeEEee
Q psy7197 220 LAEIIPPTSLVVSLSISILLSLTVFFLLLAEI 251 (488)
Q Consensus 220 ~~~~lP~vsY~t~lD~~~~~~~~~ill~l~e~ 251 (488)
+++.||++||.+++|.|+++|++|++.++.+.
T Consensus 44 ~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~ 75 (237)
T PF02932_consen 44 VAENLPPTSYAKPLDGWYFICTMFVFSASLEF 75 (237)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccchhhhhccccchhhhHHHHh
Confidence 35789999999999999999999888776654
No 10
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=66.76 E-value=0.94 Score=48.64 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=27.3
Q ss_pred cccCCCCcccchhhhhhhhhhceeeeeEEee
Q psy7197 221 AEIIPPTSLVVSLSISILLSLTVFFLLLAEI 251 (488)
Q Consensus 221 ~~~lP~vsY~t~lD~~~~~~~~~ill~l~e~ 251 (488)
++.+|++||++++|.|+++|++++++.+.+.
T Consensus 291 ~~~lP~~S~vpli~~y~~~~~~~v~~sli~t 321 (459)
T TIGR00860 291 RESLPAVSYVKAIDVYFAVCMAFVFLALLET 321 (459)
T ss_pred HhhCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999888777664
No 11
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=32.08 E-value=13 Score=31.31 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhcccceEEecCccccCCccceeeee
Q psy7197 439 FLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRIS 473 (488)
Q Consensus 439 ~l~~f~~~~~~~t~~i~l~~~~~~~~~~~~~~~~~ 473 (488)
-+|=|++.+++-.++++...|++|...+.++|.-+
T Consensus 5 p~WKyllil~vl~~~~lyALPnlyge~pAvqIs~~ 39 (101)
T PF13721_consen 5 PLWKYLLILVVLLLGALYALPNLYGEDPAVQISAS 39 (101)
T ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCcEEEecC
Confidence 34555555555555667778999999999988664
No 12
>KOG3644|consensus
Probab=29.24 E-value=5 Score=42.99 Aligned_cols=56 Identities=23% Similarity=0.141 Sum_probs=47.0
Q ss_pred hhhhhhhhhceeeeeEEeecCCCeeeeccchhhhhHHhhhcceeeEEEEEEEeeeec
Q psy7197 233 LSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFR 289 (488)
Q Consensus 233 lD~~~~~~~~~ill~l~e~lP~tS~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r 289 (488)
+-+--++.+++....+...||+-| .+-.|+.++++||++++.|+++-++|..+..|
T Consensus 286 LgvtsLLtLttq~~~i~~~LP~VS-YvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 286 LGVTSLLTLTTQSGGIRRNLPKVS-YVKAIDVWMGVCMTFIFGSLLELAVVNYVGRR 341 (457)
T ss_pred ehHHHHHHHHHHhcchhhcCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444556678888899999999998 88999999999999999999998887766543
No 13
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=22.91 E-value=51 Score=32.56 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=15.4
Q ss_pred eeeeeeeccCcceee-eeecc
Q psy7197 81 EIDVEYFPFDEQTCV-MKFGS 100 (488)
Q Consensus 81 ~~dl~~FPFD~Q~C~-l~f~S 100 (488)
.=+..+||||+..-. +.+..
T Consensus 96 ~G~~~~yPFD~Y~~~~i~v~~ 116 (256)
T PF14494_consen 96 DGDINNYPFDRYRTDPIRVSA 116 (256)
T ss_pred cCCccCCCCcccccceEEEEE
Confidence 456788999999888 66644
No 14
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=22.78 E-value=30 Score=30.25 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=22.4
Q ss_pred ccccCCCcccCCCCCCccchhhhHHHHHHHHHHhhhcccc
Q psy7197 414 RSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAG 453 (488)
Q Consensus 414 ~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~~~~~~t~~ 453 (488)
|+.+.|.++ -..+.||- +++|++|...|.+.
T Consensus 24 rq~~rd~~y--------~~R~~~~Y-~~LfiVFl~AG~vL 54 (141)
T PRK13743 24 RQTKRDYDY--------ERRVSDIY-FDLFIVFLTAGIVL 54 (141)
T ss_pred HhhhhhHHH--------HHHHHHHH-HHHHHHHHHhhHHH
Confidence 344559999 99999985 56787777666543
Done!