RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7197
(488 letters)
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 435 bits (1119), Expect = e-149
Identities = 169/461 (36%), Positives = 240/461 (52%), Gaps = 50/461 (10%)
Query: 8 CSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 67
+ +W DY+L WDP Y G++ L +PSD +W+PDIVL NN DG+FE+TL + +TG
Sbjct: 80 LNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQHTGA 139
Query: 68 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRH-LDEEKGTNVVDIGV 126
V W P AIY+SSC I V YFPFD Q C M F S+TYD +V L+H LD + V +I +
Sbjct: 140 VSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMI 199
Query: 127 DLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGIS 186
+ AF + +W I P+ +N + D Y D+TF + ++RK LFY V I+PC+ IS
Sbjct: 200 NQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILIS 256
Query: 187 FLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFL 246
L ILVFYLP D+GEK +SLSIS LL+LTVF L
Sbjct: 257 ILAILVFYLPPDAGEK----------------------------MSLSISALLALTVFLL 288
Query: 247 LLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIH 306
LLA+ +P TSL VP++ +++F MIL FS+ ++VVVLN+H RSP TH M W++++FI
Sbjct: 289 LLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIE 348
Query: 307 LLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEPLDPLPPPIP 366
LP L ++RP + ++ + P+D+ P
Sbjct: 349 TLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAV-QPERLFSE 407
Query: 367 PLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPL 426
+ ++ L +L +A+ +++IA+ ++A L W Y
Sbjct: 408 MKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESA---------SEFDDLKKDWQY---- 454
Query: 427 IIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVP 467
AMV DRLFL+IF IG+ I L A P
Sbjct: 455 ----VAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP 491
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 436 bits (1122), Expect = e-149
Identities = 140/485 (28%), Positives = 222/485 (45%), Gaps = 58/485 (11%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
+WYD++LTW+ EY + +L + + IW PDIVL NN DG + V + G V
Sbjct: 81 HAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPNGYVT 140
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEE---KGTNVVDIGV 126
W PPAI++SSC I+V YFPFD Q C +KF + Y+ ++ + + + K + I +
Sbjct: 141 WLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIII 200
Query: 127 DLTAFYTSVEWDILEVPAVRNEKFYTC-CDEPYLDITFNITMRRKTLFYTVNLIIPCMGI 185
D AF + EW+I+ PA +N Y D+TF + +RRK LFY +N I PC+ I
Sbjct: 201 DPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLI 260
Query: 186 SFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFF 245
SFL L FYLP++SGEK +S +I +LL+ VF
Sbjct: 261 SFLAALAFYLPAESGEK----------------------------MSTAICVLLAQAVFL 292
Query: 246 LLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFI 305
LL ++ +P T+L VPL+GK+++F M L T + +VLN HFR+P THV+S VK++F+
Sbjct: 293 LLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFL 352
Query: 306 HLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTP------TRPPGDLPLDDIESEPLD 359
LP++L M R + + + + V + + +SE
Sbjct: 353 EKLPRILHMSRVDEIEQPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHG 412
Query: 360 PLPPPIPPLPPMKK---VSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSL 416
+P P + ++ L E+ I +I +K
Sbjct: 413 LVPRVTPRIGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQ---------IKEKNAYDEE 463
Query: 417 CHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIA 476
W+ +DRL ++I T +++G+ I + P + + +
Sbjct: 464 VGNWNL--------VGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKPFEGDPFDYS 515
Query: 477 STTAK 481
S +
Sbjct: 516 SDHPR 520
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 429 bits (1105), Expect = e-147
Identities = 138/471 (29%), Positives = 216/471 (45%), Gaps = 56/471 (11%)
Query: 8 CSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 67
W DY+L+W+ EY G++++ +PS+ +W PD+VL NN DG FEV + G
Sbjct: 55 IEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVYNDGS 114
Query: 68 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVD 127
+ W PPAIY+S+C I V YFPFD Q C + F S TY+ +V+L+ EE G V I +D
Sbjct: 115 MYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEE-GEVVEWIHID 173
Query: 128 LTAFYTSVEWDILEVPAVRNEKFYTCCDE-PYLDITFNITMRRKTLFYTVNLIIPCMGIS 186
F + EW I PA +N + D+ + +I F + ++RK LFY +N+I PC+ IS
Sbjct: 174 PEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLIS 233
Query: 187 FLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFL 246
L +LV++LP+ +G + +LSIS+LL+ T+F
Sbjct: 234 SLVVLVYFLPAQAGGQ---------------------------KCTLSISVLLAQTIFLF 266
Query: 247 LLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIH 306
L+A+ +P TSL VPL+GK+++F M + + V+VLN+ R+P TH +S +K +F+
Sbjct: 267 LIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLE 326
Query: 307 LLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESE---------P 357
LPK L M + + + +S+ + P ++ E
Sbjct: 327 FLPKYLGMHLEPSEE-TPEKPQPRRRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKR 385
Query: 358 LDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLC 417
++ + I + + PE+ + FIA TK S
Sbjct: 386 VNKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQ---------NDSGSEN 436
Query: 418 HGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPI 468
W V+D+ WI L +G+ I L P
Sbjct: 437 ENWVL--------IGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFPF 479
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 423 bits (1088), Expect = e-145
Identities = 164/450 (36%), Positives = 234/450 (52%), Gaps = 79/450 (17%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
Q W D +L W+P +YGG++ + +PSD +W PD+VLYNNADG+F + TK L+YTG++
Sbjct: 82 QQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYTGKIM 141
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
W PPAI+KS CEI V +FPFD+Q C MK G WTYDG +V + + DL+
Sbjct: 142 WTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDR---------PDLS 192
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDE-PYLDITFNITMRRKTLFYTVNLIIPCMGISFL 188
F S EW + + ++ +YTCC + PYLDIT++ M+R L++ VN+IIPC+ SFL
Sbjct: 193 TFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFL 252
Query: 189 TILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLL 248
T+LVFYLP+DSGEK ++LSIS+LLSLTVF L++
Sbjct: 253 TVLVFYLPTDSGEK----------------------------MTLSISVLLSLTVFLLVI 284
Query: 249 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLL 308
E+IP TS VPL+GK++LFTMI SI VTVVV+N H RSP TH M WV+K+FI+ +
Sbjct: 285 VELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTI 344
Query: 309 PKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEPLDPLPPPIPPL 368
P ++ + ++ + +
Sbjct: 345 PNVMFFSTMKRASKEKQENKIFADDIDISD------------------------ISGKQV 380
Query: 369 PPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLII 428
P++ AI GV++IA+H K+ + W Y
Sbjct: 381 TGEVIFQTPLIKNPDVKSAIEGVKYIAEHMKSDEESSNA---------AEEWKY------ 425
Query: 429 PSPAMVLDRLFLWIFTLAVLIGSAGIILQA 458
AMV+D + L +F L +IG+ +
Sbjct: 426 --VAMVIDHILLCVFMLICIIGTVSVFAGR 453
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 378 bits (973), Expect = e-129
Identities = 141/302 (46%), Positives = 188/302 (62%), Gaps = 38/302 (12%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
Q W D +L W+P +YGG++ + +PSD +W PD+VLYNNADG+F + TK L+YTG++
Sbjct: 58 QQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYTGKIM 117
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
W PPAI+KS CEI V +FPFD+Q C MK G WTYDG +V + + DL+
Sbjct: 118 WTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDR---------PDLS 168
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 188
F S EW + + ++ +YTCC D PYLDIT++ M+R L++ VN+IIPC+ SFL
Sbjct: 169 TFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFL 228
Query: 189 TILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLL 248
T+LVFYLP+DSGEK ++LSIS+LLSLTVF L++
Sbjct: 229 TVLVFYLPTDSGEK----------------------------MTLSISVLLSLTVFLLVI 260
Query: 249 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLL 308
E+IP TS VPL+GK++LFTMI SI VTVVV+N H RSP TH VK + H+
Sbjct: 261 VELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHSAIEGVKYIAEHMK 320
Query: 309 PK 310
Sbjct: 321 SD 322
Score = 43.7 bits (103), Expect = 8e-05
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 432 AMVLDRLFLWIFTLAVLIGSAGIILQA 458
AMV+D + L +F L +IG+ +
Sbjct: 336 AMVIDHILLCVFMLICIIGTVSVFAGR 362
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 377 bits (970), Expect = e-128
Identities = 130/311 (41%), Positives = 177/311 (56%), Gaps = 39/311 (12%)
Query: 8 CSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 67
+ +W DY+L WDP Y G++ L +PSD +W+PDIVL NN DG+FE+TL + +TG
Sbjct: 56 LNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQHTGA 115
Query: 68 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVD 127
V W P AIY+SSC I V YFPFD Q C M F S+TYD +V L+H + ++
Sbjct: 116 VSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDA--------MIN 167
Query: 128 LTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISF 187
AF + +W I P+ +N + D Y D+TF + ++RK LFY V I+PC+ IS
Sbjct: 168 QDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISI 224
Query: 188 LTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLL 247
L ILVFYLP D+GEK +SLSIS LL+LTVF LL
Sbjct: 225 LAILVFYLPPDAGEK----------------------------MSLSISALLALTVFLLL 256
Query: 248 LAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHL 307
LA+ +P TSL VP++ +++F MIL FS+ ++VVVLN+H RSP TH +K + L
Sbjct: 257 LADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHEAVEAIKYIAEQL 316
Query: 308 LPKLLVMRRPQ 318
+
Sbjct: 317 ESASEFDDLKK 327
Score = 54.5 bits (131), Expect = 3e-08
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 432 AMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVP 467
AMV DRLFL+IF IG+ I L A P
Sbjct: 333 AMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP 368
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 369 bits (949), Expect = e-125
Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 38/313 (12%)
Query: 8 CSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 67
W DY+L+W+ EY G++++ +PS+ +W PD+VL NN DG FEV + G
Sbjct: 55 IEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVYNDGS 114
Query: 68 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVD 127
+ W PPAIY+S+C I V YFPFD Q C + F S TY+ +V+L+ EE G+D
Sbjct: 115 MYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEE--------GID 166
Query: 128 LTAFYTSVEWDILEVPAVRNEKFYTCCDE-PYLDITFNITMRRKTLFYTVNLIIPCMGIS 186
F + EW I PA +N + D+ + +I F + ++RK LFY +N+I PC+ IS
Sbjct: 167 PEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLIS 226
Query: 187 FLTILVFYLPSD-SGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFF 245
L +LV++LP+ G+K +LSIS+LL+ T+F
Sbjct: 227 SLVVLVYFLPAQAGGQK----------------------------CTLSISVLLAQTIFL 258
Query: 246 LLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFI 305
L+A+ +P TSL VPL+GK+++F M + + V+VLN+ R+P TH +
Sbjct: 259 FLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSCVEACNFIAK 318
Query: 306 HLLPKLLVMRRPQ 318
+ +
Sbjct: 319 STKEQNDSGSENE 331
Score = 43.3 bits (102), Expect = 1e-04
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 17/75 (22%)
Query: 385 HKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFT 444
H + FIA TK + W V+D+ WI
Sbjct: 307 HSCVEACNFIAKSTKEQNDSGSENE---------NWVL--------IGKVIDKACFWIAL 349
Query: 445 LAVLIGSAGIILQAP 459
L +G+ I L
Sbjct: 350 LLFSLGTLAIFLTGH 364
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 365 bits (938), Expect = e-124
Identities = 110/312 (35%), Positives = 159/312 (50%), Gaps = 41/312 (13%)
Query: 8 CSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 67
+WYD++LTW+ EY + +L + + IW PDIVL NN DG + V + G
Sbjct: 58 MDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPNGY 117
Query: 68 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVD 127
V W PPAI++SSC I+V YFPFD Q C +KF + Y+ ++ + D+ +D
Sbjct: 118 VTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISM------------DLIID 165
Query: 128 LTAFYTSVEWDILEVPAVRNEKFYTC-CDEPYLDITFNITMRRKTLFYTVNLIIPCMGIS 186
AF + EW+I+ PA +N Y D+TF + +RRK LFY +N I PC+ IS
Sbjct: 166 PEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLIS 225
Query: 187 FLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFL 246
FL L FYLP++SGEK +S +I +LL+ VF L
Sbjct: 226 FLAALAFYLPAESGEK----------------------------MSTAICVLLAQAVFLL 257
Query: 247 LLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIH 306
L ++ +P T+L VPL+GK+++F M L T + +VLN HFR+P TH +
Sbjct: 258 LTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHSGIDSTNYIVKQ 317
Query: 307 LLPKLLVMRRPQ 318
+ K
Sbjct: 318 IKEKNAYDEEVG 329
Score = 41.4 bits (97), Expect = 4e-04
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 432 AMVLDRLFLWIFTLAVLIGSAGIILQA 458
+DRL ++I T +++G+ I +
Sbjct: 335 GQTIDRLSMFIITPVMVLGTIFIFVMG 361
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 324 bits (832), Expect = e-108
Identities = 53/308 (17%), Positives = 104/308 (33%), Gaps = 48/308 (15%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
SW D +L +DP G V + + IW P+I N + +++ G V+
Sbjct: 49 LSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVENARD--ADVVDISVSPDGTVQ 105
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
+ + +D +PFD QT + + D + L E+ V
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEK---------VGKN 156
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLT 189
WDI AV + D + + + + R+ Y N+I+P + I F++
Sbjct: 157 DDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFIS 216
Query: 190 ILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLA 249
F+ S V+L +S L++ F +L+ +P T
Sbjct: 217 WTAFWSTS-YEANVTLVVSTLIAHIAFNILVETCLPKTPY-------------------- 255
Query: 250 EIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVV--LNIHFRSPQTHVMSPWVKKVFIHL 307
+ G + + ++ V L + + + ++ + F
Sbjct: 256 ---------MTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAF--- 303
Query: 308 LPKLLVMR 315
P + ++
Sbjct: 304 -PVVFLLA 310
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 259 bits (663), Expect = 8e-85
Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 10/162 (6%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
Q W DY L W+P +YGGV+ +H+PS+ IWRPD+VLYNNADG+F + TK L+YTG +
Sbjct: 59 QQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLDYTGHIT 118
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
W PPAI+KS CEI V +FPFDEQ C MK G+ TYDG V + ++ DL+
Sbjct: 119 WTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESDQ---------PDLS 169
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRK 170
F S EW I E ++ FY+CC PYLDIT++ M+R
Sbjct: 170 NFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRL 211
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 252 bits (645), Expect = 2e-80
Identities = 43/305 (14%), Positives = 92/305 (30%), Gaps = 51/305 (16%)
Query: 10 QSWYDYKLTWD---PKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTG 66
W P ++ ++ +W P + N T + L G
Sbjct: 41 AQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPD--TGNKRLMLFPDG 98
Query: 67 RVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGV 126
RV + + S ++D FPFD Q V++ ++Y+ Q+ +
Sbjct: 99 RVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQV---------YT 149
Query: 127 DLTAFYTSVEWDILEVPAVRNEKFYTCC-------DEPYLDITFNITMRRKTLFYTVNLI 179
+ EW I + + IT I R +Y + I
Sbjct: 150 ENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFI 209
Query: 180 IPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILL 239
+P I + VF+L S S E++ S +++L++ + + I+P
Sbjct: 210 LPLGLIIAASWSVFWLESFS-ERLQTSFTLMLTVVAYAFYTSNILPRLPY---------- 258
Query: 240 SLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPW 299
++ + ++ +I + + + + ++
Sbjct: 259 -------------------TTVIDQMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQR 299
Query: 300 VKKVF 304
+ F
Sbjct: 300 CRLAF 304
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 246 bits (630), Expect = 1e-79
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
SW D L WDP+ + + + D IW PDI L+N+ D + + T+A + G V
Sbjct: 67 LSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVL 126
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
W PPA+ K C D +C +FGSW Y +VD+ +D++ ++
Sbjct: 127 WIPPAVLKVLCVSQ-----DDVDSCHFQFGSWVYSVDEVDIHFMDDK---------AEVL 172
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVN--LIIPC 182
+ +ILE A R E Y CC+ Y+++ + + +R + T + L
Sbjct: 173 LDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSRDLAHHH 227
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 243 bits (623), Expect = 2e-78
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
Q W L WDP EYG + + IW PDI Y++ +V A + + G V
Sbjct: 67 QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLSPQIAVVTHDGSVM 125
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
+ P C+ + TC +KFGSW Y GF++DL+ ++ VDL+
Sbjct: 126 FIPAQRLSFMCDPTG-VDSEEGATCAVKFGSWVYSGFEIDLKTDTDQ---------VDLS 175
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLII 180
++Y S +++IL R + Y+CC EPY+D+ + R + +
Sbjct: 176 SYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 232 bits (592), Expect = 3e-74
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 12/167 (7%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
+W D L W+ + VP +W PD+ YN EV A + G V
Sbjct: 57 TTWSDRTLAWNSSHSPDQ--VSVPISSLWVPDLAAYNAISK-PEVLTPQLARVVSDGEVL 113
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
+ P + SC++ TC +K GSWT+ ++ + E D
Sbjct: 114 YMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTEN--------SDDSE 164
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTV 176
F ++IL+V +N Y+CC E Y D+ ++ R+K +
Sbjct: 165 YFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 230 bits (588), Expect = 1e-71
Identities = 49/310 (15%), Positives = 101/310 (32%), Gaps = 42/310 (13%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVP-SDHIWRPDIVLYNNADGNFEVTLATKA--TLNYTG 66
+SW D +L++ K G + + + IW PD N ++ G
Sbjct: 57 ESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDG 116
Query: 67 RVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGV 126
V + SC + ++Y+P D Q C + S+ Y ++ + V +
Sbjct: 117 TVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSS 176
Query: 127 DLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGIS 186
L + + Y + I ++R+ FY + L IP +
Sbjct: 177 SL------PSFQLTNT--STTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLV 228
Query: 187 FLTILVFYLPSDS-GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFF 245
++ + F+ + +V+L ++ LL++T + +PP S
Sbjct: 229 IVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS----------------- 271
Query: 246 LLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHV-MSPWVKKVF 304
+ + ++ M ++ +V +I +S V +
Sbjct: 272 ------------YIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLIS 319
Query: 305 IHLLPKLLVM 314
L P L +
Sbjct: 320 RALFPVLFFV 329
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 223 bits (571), Expect = 3e-71
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
SW D+ L W+ EY GV+ + VP +W PD+ YN EV A +N +G V+
Sbjct: 56 MSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISK-PEVLTPQLALVNSSGHVQ 114
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
+ P + SC++ TC +KFGSWT+ ++DL+ + D++
Sbjct: 115 YLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTHHSRELDLQMQE-----------ADIS 162
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRK 170
+ ++++ V R+E+FY CC EPY D+TF +T R+K
Sbjct: 163 GYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 221 bits (565), Expect = 3e-70
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
SW ++ + +P +W PD+ YN E+ A + ++ G V
Sbjct: 54 ASWKVPYY-SSLLSSSSLDQVSLPVSKMWTPDLSFYNAIAA-PELLSADRVVVSKDGSVI 111
Query: 70 WKPPAIYKSSCE-IDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDL 128
+ P + +C+ I+V+ P TC +K GSWT+D Q L +E V++
Sbjct: 112 YVPSQRVRFTCDLINVDTEPG--ATCRIKVGSWTHDNKQFALITGEEG--------VVNI 161
Query: 129 TAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRK 170
++ S ++D+L N K Y+CC+ Y DI R+K
Sbjct: 162 AEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 198 bits (504), Expect = 1e-60
Identities = 78/297 (26%), Positives = 123/297 (41%), Gaps = 54/297 (18%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 231
LFY +N I PC+ ISFL L FYLP++SGEK+S +IS+LL+ VF LL ++ +P T+L V
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 232 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSP 291
PL+GK+++F M L T I +VLN HFR+P
Sbjct: 62 ----------------------------PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTP 93
Query: 292 QTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTP---------T 342
THV+S VK++F+ LP++L M R + + + + V +
Sbjct: 94 STHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQEYFNIKS 153
Query: 343 RPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAV 402
R + + P I + ++ L E+ I +I K
Sbjct: 154 RSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEK- 212
Query: 403 NDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAP 459
W+ +DRL ++I T +++G+ I +
Sbjct: 213 --------NAYDEEVGNWNL--------VGQTIDRLSMFIITPVMVLGTIFIFVMGN 253
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 194 bits (494), Expect = 1e-59
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 12/165 (7%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
SW D +L +DP G V + + IW P+I N + +++ G V+
Sbjct: 45 LSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVENARD--ADVVDISVSPDGTVQ 101
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
+ + +D D QT + + D + L E V
Sbjct: 102 YLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLE---------KVGKN 152
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFY 174
WDI AV + D + + + + R+ +
Sbjct: 153 DDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHH 197
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 186 bits (475), Expect = 2e-57
Identities = 72/181 (39%), Positives = 98/181 (54%), Gaps = 35/181 (19%)
Query: 146 RNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSL 205
+ T D ++ F RRK LFYT+NLIIPC+ I+ L ILVFYLPSD GEK
Sbjct: 3 HHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEK--- 59
Query: 206 SISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKF 265
++L IS+LL+LTVF LL+++I+PPTSL VPL+GK+
Sbjct: 60 -------------------------MTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKY 94
Query: 266 VLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVK-------KVFIHLLPKLLVMRRPQ 318
++FTM+L TFSI +V VLN+H RSP TH ++F+ + + V
Sbjct: 95 LMFTMVLVTFSIVTSVCVLNVHHRSPTTHTPRGGGGYVAMVIDRLFLWIFVFVCVFGTIG 154
Query: 319 Y 319
Sbjct: 155 M 155
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 190 bits (482), Expect = 2e-57
Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 46/288 (15%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 231
LFY V IIPC+ IS L ILVFYLP D+GEK+SLSIS LL
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL-------------------- 41
Query: 232 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSP 291
++TVF LLLA+ +P TSL VP++ ++++F MIL FS+ ++VVVLN+H RSP
Sbjct: 42 --------AVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSVVVLNLHHRSP 93
Query: 292 QTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLD 351
TH M W++++FI LP L ++RP + ++ + P+D
Sbjct: 94 NTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVD 153
Query: 352 DIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLE 411
+ P + ++ L +L +A+ +++IA+ + + ++ L+
Sbjct: 154 NARVAV-QPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLE---SASEFDDLK 209
Query: 412 VERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAP 459
+ AMV DRLFL++F + IG+ I L A
Sbjct: 210 KDWQYV--------------AMVADRLFLYVFFVICSIGTFSIFLDAS 243
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 176 bits (447), Expect = 1e-52
Identities = 89/287 (31%), Positives = 128/287 (44%), Gaps = 69/287 (24%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 231
L++ VN+IIPC+ SFLT LVFYLP+DSGEK++LSIS+LLSLTVF L++ E+IP TS V
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 232 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSP 291
PL+GK++LFTMI SI +TVVV+N H RSP
Sbjct: 62 ----------------------------PLIGKYMLFTMIFVISSIIITVVVINTHHRSP 93
Query: 292 QTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLD 351
TH M WV+K+FI +P ++ + ++ +
Sbjct: 94 STHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQENKIFADDIDISD------------- 140
Query: 352 DIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLE 411
+ P++ AI GV++IA+H K +D +
Sbjct: 141 -----------ISGKQVTGEVIFQTPLIKNPDVKSAIEGVKYIAEHMK---SDEESSNAA 186
Query: 412 VERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQA 458
E AMV+D + L +F L +IG+ +
Sbjct: 187 EEWKYV--------------AMVIDHILLCVFMLICIIGTVSVFAGR 219
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 174 bits (441), Expect = 2e-51
Identities = 75/297 (25%), Positives = 121/297 (40%), Gaps = 54/297 (18%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSG-EKVSLSISILLSLTVFFLLLAEIIPPTSLV 230
LFY +N+I PC+ IS L +LV++LP+ +G +K +LSIS+LL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL------------------- 42
Query: 231 VSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRS 290
+ T+F L+A+ +P TSL VPL+GK+++F M + + V+VLN+ R+
Sbjct: 43 ---------AQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRT 93
Query: 291 PQTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGT--------PT 342
P TH +S +K +F+ LPK L M+ + P + S + +
Sbjct: 94 PNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPRRRSSFGIMIKAEEYILKKPRS 153
Query: 343 RPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAV 402
+ D + ++ + I + + PE+ + FIA TK
Sbjct: 154 ELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQ- 212
Query: 403 NDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAP 459
S W V+D+ WI L IG+ I L
Sbjct: 213 --------NDSGSENENWVL--------IGKVIDKACFWIALLLFSIGTLAIFLTGH 253
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 164 bits (417), Expect = 3e-49
Identities = 64/151 (42%), Positives = 83/151 (54%), Gaps = 28/151 (18%)
Query: 167 MRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPP 226
LFYT+NLIIPC+ IS LT+LVFYLPS+ GEK++L IS+LLSLTVF LL+ EIIP
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPS 62
Query: 227 TSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNI 286
TS V P +G+++LFTMI T SI +TV VLN+
Sbjct: 63 TSSVS----------------------------PSIGEYLLFTMIFVTLSIVITVFVLNV 94
Query: 287 HFRSPQTHVMSPWVKKVFIHLLPKLLVMRRP 317
H RSP+TH + ++ +
Sbjct: 95 HHRSPETHTGGGGGIDRIFLWMFIIVCLLGT 125
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 141 bits (357), Expect = 1e-40
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 35/162 (21%)
Query: 136 EWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRKT------LFYTVNLIIPCMGISFL 188
++ ++ C ++ I + ++ L++ VN+I PC S L
Sbjct: 7 HHAMVIDHILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSEL 66
Query: 189 TILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLL 248
T LVFYLP+DSGEK ++ S S+L SLT +
Sbjct: 67 TGLVFYLPTDSGEK----------------------------MTESKSVLKSLTEKLKKI 98
Query: 249 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRS 290
E+IP TS VPL+GK++LFT SI +T V+N H RS
Sbjct: 99 VELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEVINTHHRS 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 4e-07
Identities = 85/559 (15%), Positives = 169/559 (30%), Gaps = 180/559 (32%)
Query: 23 EYGGVEM-LHVPSDHIWRPDIVLYNNAD---GNFEVTLATKATLNYTGRVEWKPPAIYKS 78
+G +E L VP+ + A F L T + E P +
Sbjct: 12 SHGSLEHVLLVPTA--------SFFIASQLQEQFNKILPE-PTEGFAADDE---PT---T 56
Query: 79 SCEIDVEYFPF----DEQTCVMKFGS---WTYDGFQVD-LR----H-----LDEEKGTNV 121
E+ ++ + E + V +F F+ L H L +E T +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 122 VDIGVDLTAFYTSVEWDILEVP-----------AVRNE--KFYTCC-----DEPYLDITF 163
V + + T+ + + P AV + + Y +
Sbjct: 117 VKTKELIKNYITARI--MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--- 171
Query: 164 NITMRRKTLF--YTVNLIIPCMGISFLTILVFYLPSDSGEKV-SLSISILLSLTVFFLLL 220
+R L+ Y V L+ + S T+ + EKV + ++IL +L
Sbjct: 172 --ELR--DLYQTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-----WLEN 221
Query: 221 AEIIPPTSLVVSLSISI-LLSLTVF--FLLLAEI--IPPTSLVVPLLGKFVLFTMILDTF 275
P ++S+ IS L+ + +++ A++ P L L G
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-----------A 270
Query: 276 SICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVM-----RRPQYDRNKRDMDPSQ 330
+ +V + + W + F + K + + R + PS
Sbjct: 271 TGHSQGLVTAVAIAETDS-----W--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 331 HQSTCKV-HGTPTRPP----GDLPLDDIESEPLDPLPPPIPPLPPMKKVS--------HH 377
+ + + G P+ P +L + ++ ++ LP K+V +
Sbjct: 324 LEDSLENNEGVPS--PMLSISNLTQEQVQDY-VNKTNSH---LPAGKQVEISLVNGAKNL 377
Query: 378 ---------WHLCPELHKAIAGVRFIADHTKTAVNDTKV-----KPLEVERSL-----CH 418
+ L L KA A + ++ +++ K R L H
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKA---------PSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 419 GWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPI-------DVR 471
S L++P+ ++ L + A + ++P+ D+R
Sbjct: 429 -----SHLLVPASDLINKDL-----------VKNNVSFNAKDI---QIPVYDTFDGSDLR 469
Query: 472 I--SEIAST-----TAKPV 483
+ I+ PV
Sbjct: 470 VLSGSISERIVDCIIRLPV 488
Score = 35.8 bits (82), Expect = 0.043
Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 61/222 (27%)
Query: 92 QTCVMKFGSWTYDGFQV--------DLRHLDEEKGTNVVDI----------------GVD 127
Q M G Y + D H + G +++DI G
Sbjct: 1627 QEQGM--GMDLYKTSKAAQDVWNRAD-NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 128 LTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNL--IIPCMGI 185
+ Y+++ ++ + ++ EK + +E TF + L T + M
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPALTLMEK 1741
Query: 186 SFLTIL--VFYLPSDS-------GE--------KVSLSISILLSLTVFF--LLLAEIIPP 226
+ L +P+D+ GE V +SI L+ + VF+ + + +P
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-MSIESLVEV-VFYRGMTMQVAVPR 1799
Query: 227 TSL---------VVSLSISILLSLTVFFLLLAEIIPPTSLVV 259
L + ++ S ++ + T +V
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Score = 35.4 bits (81), Expect = 0.046
Identities = 30/159 (18%), Positives = 46/159 (28%), Gaps = 77/159 (48%)
Query: 31 HVPSD-HIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPP-AIY---------KSS 79
H+P+ + +I L N A N V+ G PP ++Y K+
Sbjct: 359 HLPAGKQV---EISLVNGAK-NLVVS----------G-----PPQSLYGLNLTLRKAKAP 399
Query: 80 CEIDVEYFPFDEQ--TCVMKFG---------------------------SW--------- 101
+D PF E+ +F S+
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 102 --TYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWD 138
T+DG DLR L +VD V+W+
Sbjct: 460 YDTFDG--SDLRVLSGSISERIVD-----CIIRLPVKWE 491
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 53/374 (14%), Positives = 120/374 (32%), Gaps = 96/374 (25%)
Query: 115 EEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFY 174
K +V V+ + ++ ++ ++ E +P + I R + Y
Sbjct: 72 LSKQEEMVQKFVE-EVLRINYKF-LMS--PIKTE-----QRQPSMMTRMYIEQRDRL--Y 120
Query: 175 TVNLIIPCMGIS----FLTI------------LVFYLPSDSGEKVSLSISILLSLT---- 214
N + +S +L + ++ SG K +++ + LS
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCK 179
Query: 215 ----VFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTM 270
+F+L L P +++ L +L + + ++ L + + + +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 271 ILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVF-IHLLPKLLVMRRPQYDRNKRDMDPS 329
+ C+ +VL +V + F + K+L+ R + + +
Sbjct: 239 KSKPYENCL--LVLL--------NVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATT 286
Query: 330 QHQSTCKVHGTPTR-------------PPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSH 376
H S T T P DLP + + + P I ++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAES--IRDGLA 342
Query: 377 HW----HL-CPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPS- 430
W H+ C +L I ++++N ++P E + ++ + P
Sbjct: 343 TWDNWKHVNCDKLTTII----------ESSLN--VLEPAEYRKM------FDRLSVFPPS 384
Query: 431 ---PAMVLDRLFLW 441
P ++L +W
Sbjct: 385 AHIPTILLSL--IW 396
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex,
profilin, actin, poly-proline, loading poly-Pro site,
GAB domain, structural protein; HET: HIC ATP; 1.50A
{Homo sapiens}
Length = 43
Score = 28.7 bits (63), Expect = 0.36
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 362 PPPIPPLPPMKKVSHHWHLCPELHKAIAGVRF 393
PPP PPLP + P L AIAG +
Sbjct: 2 PPPAPPLPAAQGPGGGGAGAPGLAAAIAGAKL 33
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 31.2 bits (70), Expect = 0.46
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 41 DIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 100
+L +G+ ++ K T + V+ + S + + + + V G
Sbjct: 46 PCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVASSPIPVVISQSEIGDASRVRVSGQ 105
Query: 101 WTYDG-------FQVDLRHLDEEKGTNVVDI 124
++G F +D R D G + I
Sbjct: 106 GLHEGHTFEPAEFIIDTR--DAGYGGLSLSI 134
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 30.3 bits (67), Expect = 1.9
Identities = 29/154 (18%), Positives = 48/154 (31%), Gaps = 19/154 (12%)
Query: 288 FRSPQTHVMSPWVKKVFIHLLPKLLV--MRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPP 345
F S S VK P LV +++ + + K+ P
Sbjct: 564 FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWV---------PKKLD-VSIEMP 613
Query: 346 GDLPLDDIESEPLDP---LPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAV 402
+L + + L P P I P L + + + F D + AV
Sbjct: 614 EELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAV 673
Query: 403 NDTKVKPLE--VERSLCH--GWDYNSPLIIPSPA 432
T E + + H D+ +PLI+P +
Sbjct: 674 YYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSS 707
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 29.9 bits (65), Expect = 2.0
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 340 TPTRPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWH 379
T P ++ P+ P P P + HH H
Sbjct: 458 TAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHHHHH 497
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third
transmembrane domain, membrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 76
Score = 27.5 bits (61), Expect = 2.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 203 VSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAE 250
V L I+ +L+LT +P S V ++ I + + L F L E
Sbjct: 5 VGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLE 52
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 28.5 bits (64), Expect = 6.3
Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 182 CMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEI-IPPT--SLVVSLSISIL 238
G+SFL + + + KVS + L + ++L E+ I P S+ L+
Sbjct: 363 FAGLSFLLMAIPGALYGTSGKVSP---LWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419
Query: 239 LSL--TVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVM 296
S +++FL + + +V L V + ++ + +
Sbjct: 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV--------FL 471
Query: 297 SPWVKK 302
S ++
Sbjct: 472 SKRIQG 477
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.444
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,887,520
Number of extensions: 488229
Number of successful extensions: 1003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 44
Length of query: 488
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,993,456
Effective search space: 1561441296
Effective search space used: 1561441296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.0 bits)