RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7197
(488 letters)
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 181 bits (459), Expect = 2e-54
Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 46/288 (15%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 231
LFY V IIPC+ IS L ILVFYLP D+GEK+SLSIS LL+
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLA------------------- 42
Query: 232 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSP 291
+TVF LLLA+ +P TSL VP++ ++++F MIL FS+ ++VVVLN+H RSP
Sbjct: 43 ---------VTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSVVVLNLHHRSP 93
Query: 292 QTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLD 351
TH M W++++FI LP L ++RP + ++ + P+D
Sbjct: 94 NTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVD 153
Query: 352 DIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLE 411
+ P + ++ L +L +A+ +++IA+ ++A +K
Sbjct: 154 NARVAV-QPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLK--- 209
Query: 412 VERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAP 459
W Y AMV DRLFL++F + IG+ I L A
Sbjct: 210 ------KDWQY--------VAMVADRLFLYVFFVICSIGTFSIFLDAS 243
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 178 bits (451), Expect = 3e-53
Identities = 78/296 (26%), Positives = 124/296 (41%), Gaps = 54/296 (18%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 231
LFY +N I PC+ ISFL L FYLP++SGEK+S +IS+LL
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL-------------------- 41
Query: 232 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSP 291
+ VF LL ++ +P T+L VPL+GK+++F M L T I +VLN HFR+P
Sbjct: 42 --------AQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTP 93
Query: 292 QTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVH---------GTPT 342
THV+S VK++F+ LP++L M R + + + + V +
Sbjct: 94 STHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQEYFNIKS 153
Query: 343 RPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAV 402
R + + P I + ++ L E+ I +I K
Sbjct: 154 RSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEKN 213
Query: 403 NDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQA 458
+ W+ +DRL ++I T +++G+ I +
Sbjct: 214 AYDEEV---------GNWNL--------VGQTIDRLSMFIITPVMVLGTIFIFVMG 252
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 170 bits (431), Expect = 3e-50
Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 57/305 (18%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDS-GEKVSLSISILLSLTVFFLLLAEIIPPTSLV 230
LFY +N+I PC+ IS L +LV++LP+ + G+K +LSIS+LL+
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLA------------------ 43
Query: 231 VSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRS 290
T+F L+A+ +P TSL VPL+GK+++F M + + V+VLN+ R+
Sbjct: 44 ----------QTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRT 93
Query: 291 PQTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPL 350
P TH +S +K +F+ LPK L M+ + P + S +
Sbjct: 94 PNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPRRRSSFGIMIKAEEYILKKPRS 153
Query: 351 DDIESEPLD--------PLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAV 402
+ + E D + I + + PE+ + FIA TK
Sbjct: 154 ELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQN 213
Query: 403 NDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLY 462
+ W V+D+ WI L IG+ I L +
Sbjct: 214 DSGSEN---------ENWVL--------IGKVIDKACFWIALLLFSIGTLAIFLTG---H 253
Query: 463 DDRVP 467
++VP
Sbjct: 254 FNQVP 258
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 153 bits (387), Expect = 3e-44
Identities = 92/286 (32%), Positives = 133/286 (46%), Gaps = 69/286 (24%)
Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 231
L++ VN+IIPC+ SFLT LVFYLP+DSGEK++LSIS+LLS
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLS------------------- 42
Query: 232 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSP 291
LTVF L++ E+IP TS VPL+GK++LFTMI SI +TVVV+N H RSP
Sbjct: 43 ---------LTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIITVVVINTHHRSP 93
Query: 292 QTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLD 351
TH M WV+K+FI +P ++ + R + +
Sbjct: 94 STHTMPQWVRKIFIDTIPNVMFFSTMK------------------------RASKEKQEN 129
Query: 352 DIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLE 411
I ++ +D + P++ AI GV++IA+H K+ +
Sbjct: 130 KIFADDIDISDISGKQVTGEVIFQTPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAA--- 186
Query: 412 VERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQ 457
W Y AMV+D + L +F L +IG+ +
Sbjct: 187 ------EEWKYV--------AMVIDHILLCVFMLICIIGTVSVFAG 218
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 150 bits (379), Expect = 3e-43
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
+W D L W+ + + VP +W PD+ YN V A + G V
Sbjct: 57 TTWSDRTLAWNSSHSP--DQVSVPISSLWVPDLAAYNAISKPE-VLTPQLARVVSDGEVL 113
Query: 70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
+ P + SC++ TC +K GSWT+ ++ + E D
Sbjct: 114 YMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREISVDPTTEN--------SDDSE 164
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRK 170
F ++IL+V +N Y+CC E Y D+ ++ R+K
Sbjct: 165 YFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205
>d1rtua_ d.1.1.4 (A:) RNase U2 {Ustilago sphaerogena [TaxId:
5271]}
Length = 114
Score = 29.9 bits (67), Expect = 0.22
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 4 SLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNF 52
+L S W ++ L ++ Y + P PD V+Y G F
Sbjct: 52 TLCCGSGPWSEFPLVYNGPYYSSRDNYVSP-----GPDRVIYQTNTGEF 95
>d1t6gc_ b.29.1.11 (C:) Xylanase II {Aspergillus kawachii [TaxId:
40384]}
Length = 182
Score = 26.9 bits (60), Expect = 3.9
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 43 VLYNNADGNFEVTLATKATLNYTGRVEWKP 72
Y+ + G F + + ++ + W
Sbjct: 16 FTYDESAGTFSMYWEDGVSSDFVVGLGWTT 45
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation
factor (ABP-120) repeats {Dictyostelium discoideum
[TaxId: 44689]}
Length = 108
Score = 26.1 bits (57), Expect = 3.9
Identities = 10/65 (15%), Positives = 22/65 (33%)
Query: 20 DPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSS 79
+ K YGG + + + +N DG + + ++ V+ I S
Sbjct: 24 EVKTYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSP 83
Query: 80 CEIDV 84
+ +
Sbjct: 84 FKQVL 88
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 26.5 bits (58), Expect = 7.7
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 61 TLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRH 112
LN+ GRV ++S + D VM+FG D F +D +
Sbjct: 199 VLNFHGRVT-------QASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNY 243
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.444
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,967,838
Number of extensions: 96571
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 13
Length of query: 488
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,185,626
Effective search space: 473064774
Effective search space used: 473064774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.3 bits)