BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7198
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 54 LAHHFRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGT 108
L R + +T F+PT AR AFPCFDEP+ K F++ + ++ L N K+ T
Sbjct: 187 LGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKT 241
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 54 LAHHFRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGT 108
L R + +T F+PT AR AFPCFDEP+ K F++ + ++ L N K+ T
Sbjct: 187 LGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKT 241
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 19 LQKRSHDRQVDLTGGPDEVYLSGLPDREWLALDFHLAHHF---------------RYIIM 63
LQ H RQ + E L GLP + +L+ F R +
Sbjct: 126 LQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELRILAS 185
Query: 64 TKFDPTGARQAFPCFDEPIHKTTFNVSV 91
T+F+PT AR AFPCFDEP K +F++ +
Sbjct: 186 TQFEPTAARMAFPCFDEPAFKASFSIKI 213
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 19 LQKRSHDRQVDLTGGPDEVYLSGLPDREWLALDFHLAHHF---------------RYIIM 63
LQ H RQ + E L GLP + +L+ F R +
Sbjct: 75 LQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELRILAS 134
Query: 64 TKFDPTGARQAFPCFDEPIHKTTFNVSV 91
T+F+PT AR AFPCFDEP K +F++ +
Sbjct: 135 TQFEPTAARMAFPCFDEPAFKASFSIKI 162
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 19 LQKRSHDRQVDLTGGPDEVYLSGLPDREWLALDFHLAHHF---------------RYIIM 63
LQ H RQ + E L GLP + +L+ F R +
Sbjct: 84 LQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELRILAS 143
Query: 64 TKFDPTGARQAFPCFDEPIHKTTFNVSV 91
T+F+PT AR AFPCFDEP K +F++ +
Sbjct: 144 TQFEPTAARMAFPCFDEPAFKASFSIKI 171
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGT 108
+ + T+ T AR++FPCFDEP K TFN+++ H + L N G+
Sbjct: 138 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS 187
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGT 108
+ + T+ T AR++FPCFDEP K TFN+++ H + L N G+
Sbjct: 138 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS 187
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGT 108
+ + T+ T AR++FPCFDEP K TFN+++ H + L N G+
Sbjct: 139 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS 188
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGT 108
+ + T+ T AR++FPCFDEP K TFN+++ H + L N G+
Sbjct: 182 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS 231
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN 102
+ + T+ AR++FPCFDEP K FN+++ H K + L N
Sbjct: 141 KVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSN 184
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 61 IIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN 102
+I T F+ T AR+ FPC D P +K F ++V K Y + N
Sbjct: 95 MITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISN 136
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 61 IIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN 102
+I T F T AR+ FPC D P +K F ++V K Y + N
Sbjct: 95 MITTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISN 136
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 29 DLTGGPDEVYLSGLPDREWLALDFHLAHHFRYIIMTKFDPTGARQAFPCFDEPIHKTTFN 88
+ T G E +LS LPD L L A HF TKFDP+ ++ F DE + T +
Sbjct: 149 EATEGKIEDFLSELPDSTVLLL--LNAIHFHGFWRTKFDPSLTQKDFFHLDE---RFTVS 203
Query: 89 VSVTHSKKYSFLW 101
V + H+ Y W
Sbjct: 204 VDMMHAVSYPLRW 216
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 62 IMTKFDPTGARQAFPCFDEPIHKTTFNVSV 91
+ ++ + AR FPCFD P K+TF S+
Sbjct: 142 VFSQLEAIHARSLFPCFDTPSVKSTFTASI 171
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 62 IMTKFDPTGARQAFPCFDEPIHKTTFNVSV 91
+ ++ + AR FPCFD P K+TF S+
Sbjct: 142 VFSQLEAIHARSLFPCFDTPSVKSTFTASI 171
>pdb|1QFX|A Chain A, Ph 2.5 Acid Phosphatase From Aspergillus Niger
pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillus Niger
Length = 460
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 81 PIHKTTFNVSVTHSKKYSFLWNKN 104
P + TT NVS ++ + SF WN N
Sbjct: 416 PDYTTTCNVSASYPQYLSFWWNYN 439
>pdb|2E0P|A Chain A, The Crystal Structure Of Cel44a
pdb|2E4T|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EO7|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 78 FDEPIHKTTFNVSVTHSKKYSF--LWNKNKLGTRLSGKPK--SLKDSE-----PSISQCH 128
+D+P TTFN S+ SK Y+ +W ++ + ++ + ++KD+ P+++ CH
Sbjct: 455 YDQP---TTFNFSIDSSKNYTIGNVWAFDRGSSNITQRTPIVNIKDNTFTYTVPALTACH 511
>pdb|2EEX|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EJ1|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EQD|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 78 FDEPIHKTTFNVSVTHSKKYSF--LWNKNKLGTRLSGKPK--SLKDSE-----PSISQCH 128
+D+P TTFN S+ SK Y+ +W ++ + ++ + ++KD+ P+++ CH
Sbjct: 455 YDQP---TTFNFSIDSSKNYTIGNVWAFDRGSSNITQRTPIVNIKDNTFTYTVPALTACH 511
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,318,422
Number of Sequences: 62578
Number of extensions: 175482
Number of successful extensions: 389
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 23
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)