Query psy7198
Match_columns 128
No_of_seqs 115 out of 1114
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 20:39:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01433 Peptidase_M1: Peptida 99.9 2.7E-25 5.9E-30 180.0 11.2 124 2-125 49-189 (390)
2 KOG1046|consensus 99.9 8.5E-25 1.8E-29 195.6 11.7 95 32-126 116-219 (882)
3 TIGR02412 pepN_strep_liv amino 99.9 1.5E-23 3.2E-28 186.7 12.7 120 1-126 58-183 (831)
4 TIGR02411 leuko_A4_hydro leuko 99.8 3.9E-20 8.5E-25 160.1 11.9 120 1-126 54-186 (601)
5 PRK14015 pepN aminopeptidase N 99.8 7.2E-19 1.6E-23 157.5 12.8 117 1-125 62-186 (875)
6 TIGR02414 pepN_proteo aminopep 99.8 1.6E-18 3.4E-23 155.2 13.1 118 1-126 49-174 (863)
7 COG0308 PepN Aminopeptidase N 99.7 4.5E-17 9.9E-22 145.8 11.7 92 35-126 104-200 (859)
8 KOG1047|consensus 99.0 3.3E-10 7.1E-15 97.1 6.3 119 2-121 59-190 (613)
9 KOG1932|consensus 98.4 9.4E-07 2E-11 80.7 9.1 93 35-127 140-242 (1180)
10 PF03404 Mo-co_dimer: Mo-co ox 67.3 21 0.00046 25.3 5.6 44 2-45 42-100 (131)
11 TIGR03769 P_ac_wall_RPT actino 52.5 29 0.00063 19.8 3.4 23 29-51 6-28 (41)
12 PF12518 DUF3721: Protein of u 38.8 13 0.00029 20.7 0.5 10 73-82 25-34 (34)
13 PF07495 Y_Y_Y: Y_Y_Y domain; 35.3 97 0.0021 18.2 4.6 20 27-46 30-49 (66)
14 PF05964 FYRN: F/Y-rich N-term 33.7 51 0.0011 19.7 2.6 23 70-92 31-53 (54)
15 PF03944 Endotoxin_C: delta en 32.1 1.3E+02 0.0029 21.2 4.9 38 13-50 26-66 (143)
16 cd02110 SO_family_Moco_dimer S 30.8 1.4E+02 0.003 24.2 5.4 42 2-44 237-286 (317)
17 cd02114 bact_SorA_Moco sulfite 28.8 1.7E+02 0.0036 24.4 5.6 43 2-44 289-338 (367)
18 PHA03370 virion protein US2; P 28.4 13 0.00028 29.7 -0.9 31 59-89 168-198 (269)
19 PF14054 DUF4249: Domain of un 28.4 1.7E+02 0.0037 22.6 5.4 40 5-44 64-108 (298)
20 PF09149 DUF1935: Domain of un 26.3 1.2E+02 0.0026 20.7 3.7 17 66-82 3-20 (104)
21 PF12969 DUF3857: Domain of Un 24.0 1.3E+02 0.0029 21.1 3.8 45 77-121 120-165 (177)
22 smart00758 PA14 domain in bact 21.8 1.3E+02 0.0028 20.4 3.2 19 28-46 94-112 (136)
23 PF00630 Filamin: Filamin/ABP2 21.0 2.3E+02 0.0051 17.9 5.2 18 29-46 75-92 (101)
24 PF04151 PPC: Bacterial pre-pe 20.9 1.7E+02 0.0037 17.7 3.4 18 25-42 51-68 (70)
No 1
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.93 E-value=2.7e-25 Score=180.03 Aligned_cols=124 Identities=23% Similarity=0.331 Sum_probs=94.7
Q ss_pred eEEEEEEEeccccceEE---EeecccceeEEe----eCCCCcEEEEEEEEEEEecccc---c-------ccceeeEEEEe
Q psy7198 2 TLIKVLIHRDLWGFFLI---LQKRSHDRQVDL----TGGPDEVYLSGLPDREWLALDF---H-------LAHHFRYIIMT 64 (128)
Q Consensus 2 ~~~~v~~~~~~~~~~~~---~~~~~~~~~l~l----~~~~~~~y~L~I~y~g~i~~~~---~-------~~g~~~~~~~T 64 (128)
+|.+|.+++........ .+.+.....|.| .+.+|..|+|+|.|+|.++.+. + .++..+|+++|
T Consensus 49 ~I~~v~~~~~~~~~~~~~~~~~~~~~~~~l~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t 128 (390)
T PF01433_consen 49 SISSVSLNGNDSSSEYKSSPFEYDDENEKLTITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYT 128 (390)
T ss_dssp EEEEEEETTEECSCTECCEEEEEECCBTEEEEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEE
T ss_pred EEEEEeecCccccccccccceeeccccceeehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceee
Confidence 56777777664432111 222223334544 3346777999999999988742 2 25667899999
Q ss_pred eccccCCCeeeeeCCCCCCcceEEEEEEecCCcEEEecCcccceEEeCCCceEEEeecCCC
Q psy7198 65 KFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTRLSGKPKSLKDSEPSIS 125 (128)
Q Consensus 65 ~fep~~AR~~FPCfDeP~~KAtF~l~v~~p~~~~alSN~~~~~~~~~~~~~~~~~F~~TP~ 125 (128)
|+||.+||+||||||+|.+||+|+|+|++|++|+|+|||++++....++++.+++|+.||+
T Consensus 129 ~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p 189 (390)
T PF01433_consen 129 QFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESNDDGWKTTTFETTPP 189 (390)
T ss_dssp E-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEETTTEEEEEEEEEEE
T ss_pred cccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccccccceeEeeecccc
Confidence 9999999999999999999999999999999999999999998888788899999999986
No 2
>KOG1046|consensus
Probab=99.92 E-value=8.5e-25 Score=195.63 Aligned_cols=95 Identities=27% Similarity=0.322 Sum_probs=85.8
Q ss_pred CCCCcEEEEEEEEEEEeccccc---------ccceeeEEEEeeccccCCCeeeeeCCCCCCcceEEEEEEecCCcEEEec
Q psy7198 32 GGPDEVYLSGLPDREWLALDFH---------LAHHFRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN 102 (128)
Q Consensus 32 ~~~~~~y~L~I~y~g~i~~~~~---------~~g~~~~~~~T~fep~~AR~~FPCfDeP~~KAtF~l~v~~p~~~~alSN 102 (128)
+.++..|+|+|.|.|.+++++. ..+..+|+++|||||+.||++|||||||++||+|.|+|.||++++|+||
T Consensus 116 l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSN 195 (882)
T KOG1046|consen 116 LLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSN 195 (882)
T ss_pred cccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeec
Confidence 3578889999999999998753 3455689999999999999999999999999999999999999999999
Q ss_pred CcccceEEeCCCceEEEeecCCCc
Q psy7198 103 KNKLGTRLSGKPKSLKDSEPSISQ 126 (128)
Q Consensus 103 ~~~~~~~~~~~~~~~~~F~~TP~~ 126 (128)
||+.+....++++.+++|++||+.
T Consensus 196 m~v~~~~~~~~~~~~~~F~~Tp~M 219 (882)
T KOG1046|consen 196 MPVIKEEPVDDGWKTTTFEKTPKM 219 (882)
T ss_pred CcccccccccCCeeEEEEEecCCC
Confidence 999987777777999999999985
No 3
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.90 E-value=1.5e-23 Score=186.66 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=90.5
Q ss_pred CeEEEEEEEeccccceEEEeecccceeEEeeCCCCcEEEEEEEEEEEeccc---cc---ccceeeEEEEeeccccCCCee
Q psy7198 1 MTLIKVLIHRDLWGFFLILQKRSHDRQVDLTGGPDEVYLSGLPDREWLALD---FH---LAHHFRYIIMTKFDPTGARQA 74 (128)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~y~L~I~y~g~i~~~---~~---~~g~~~~~~~T~fep~~AR~~ 74 (128)
++|.+|.++|. +.......+.+|.+.....+.++|+|.|++.++.. ++ .....+++++|||||.+||+|
T Consensus 58 l~I~~v~vng~-----~~~~~~~~~~~i~l~~l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~~~~~Tq~ep~~Ar~~ 132 (831)
T TIGR02412 58 AQIESVTLNGI-----LDVAPVYDGSRIPLPGLLTGENTLRVEATRAYTNTGEGLHRFVDPVDGEVYLYTQFEPADARRV 132 (831)
T ss_pred CEEEEEEECCc-----ccCccccCCCEEEccCCCCCceEEEEEEEEEecCCCceEEEEEeCCCCeEEEEECCCCcCceee
Confidence 46888888653 11122223455666545456899999999988754 32 111234788999999999999
Q ss_pred eeeCCCCCCcceEEEEEEecCCcEEEecCcccceEEeCCCceEEEeecCCCc
Q psy7198 75 FPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTRLSGKPKSLKDSEPSISQ 126 (128)
Q Consensus 75 FPCfDeP~~KAtF~l~v~~p~~~~alSN~~~~~~~~~~~~~~~~~F~~TP~~ 126 (128)
|||||||.+||+|+|+|++|++|+|+|||++.+....+ ++.+++|++||+-
T Consensus 133 fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~~~~-~~~~~~F~~t~pm 183 (831)
T TIGR02412 133 FAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVTPEP-ADRRWEFPETPKL 183 (831)
T ss_pred EecCCCCCCceeEEEEEEECCCceEECCCccccccccC-CCeEEEecCCCCc
Confidence 99999999999999999999999999999987665543 4667889999874
No 4
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.83 E-value=3.9e-20 Score=160.11 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=88.9
Q ss_pred CeEEEEEEEeccccceEEEeec-ccceeEEeeCC----CCcEEEEEEEEEEEecc-ccc------ccceeeEEEEeeccc
Q psy7198 1 MTLIKVLIHRDLWGFFLILQKR-SHDRQVDLTGG----PDEVYLSGLPDREWLAL-DFH------LAHHFRYIIMTKFDP 68 (128)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~l~l~~~----~~~~y~L~I~y~g~i~~-~~~------~~g~~~~~~~T~fep 68 (128)
++|.+|.++|... .+.+.... ..+.+|.|++. +++.|+|+|.|++..+. ++. .+|..+++++|||||
T Consensus 54 L~I~~V~v~g~~~-~~~~~~~~~~~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~~~gl~~~~~~~t~g~~~py~~Tq~qp 132 (601)
T TIGR02411 54 LDIQKVTINGLPA-DFAIGERKEPLGSPLTISLPIATSKNKELVLNISFSTTPKCTALQWLTPEQTSGKKHPYLFSQCQA 132 (601)
T ss_pred CEEEEEEECCccc-ceEeccccCCCCCeEEEEeCCccCCCceEEEEEEEeecCCCceeEEecccccCCCCCCEEEECCcc
Confidence 4788998876543 34443333 34667877664 46799999999997643 332 356666888999999
Q ss_pred cCCCeeeeeCCCCCCcceEEEEEEecCCcEEEec-CcccceEEeCCCceEEEeecCCCc
Q psy7198 69 TGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN-KNKLGTRLSGKPKSLKDSEPSISQ 126 (128)
Q Consensus 69 ~~AR~~FPCfDeP~~KAtF~l~v~~p~~~~alSN-~~~~~~~~~~~~~~~~~F~~TP~~ 126 (128)
.+||+||||||+|.+||+|+++|++| +.|++| +++.++ . ++..++.|+.||+-
T Consensus 133 ~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~-~--~~~~~~~F~~t~pm 186 (601)
T TIGR02411 133 IHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET-S--NDPGKYLFKQKVPI 186 (601)
T ss_pred cchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc-c--CCCceEEEEeCCCc
Confidence 99999999999999999999999999 888855 554333 2 23457889999873
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.79 E-value=7.2e-19 Score=157.52 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=88.1
Q ss_pred CeEEEEEEEeccccceEEE-eecccceeEEeeCCCCcEEEEEEEEEEEecc-----cccccceeeEEEEeeccccCCCee
Q psy7198 1 MTLIKVLIHRDLWGFFLIL-QKRSHDRQVDLTGGPDEVYLSGLPDREWLAL-----DFHLAHHFRYIIMTKFDPTGARQA 74 (128)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~-~~~~~~~~l~l~~~~~~~y~L~I~y~g~i~~-----~~~~~g~~~~~~~T~fep~~AR~~ 74 (128)
|+|.+|.++|. .+.+ .....++.|.|++.+ +.++|+|.|.+.... +++..+ .+++|||||++||+|
T Consensus 62 L~I~sV~v~G~----~~~~~~~~~~~~~L~I~~l~-~~~~l~I~y~~~P~~n~~l~Gly~s~---~~~~TQ~Ep~gAR~~ 133 (875)
T PRK14015 62 LELLSLALDGQ----PLAPSAYELDEEGLTIENLP-DRFTLEIETEIDPEANTALEGLYRSG---GMFCTQCEAEGFRRI 133 (875)
T ss_pred CEEEEEEECCE----EcCccceEEcCCEEEEecCC-ccEEEEEEEEEecCCCCCceeeEEEC---CEEEEeccccCcCCc
Confidence 57888888653 2211 222235678888654 469999999986543 222211 156899999999999
Q ss_pred eeeCCCCCCcceEEEEEEecC-Cc-EEEecCcccceEEeCCCceEEEeecCCC
Q psy7198 75 FPCFDEPIHKTTFNVSVTHSK-KY-SFLWNKNKLGTRLSGKPKSLKDSEPSIS 125 (128)
Q Consensus 75 FPCfDeP~~KAtF~l~v~~p~-~~-~alSN~~~~~~~~~~~~~~~~~F~~TP~ 125 (128)
|||||+|.+||+|+++|++|+ .| .++|||++++....++++.+++|+.+++
T Consensus 134 fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~P 186 (875)
T PRK14015 134 TYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGELPDGRHWATWEDPFP 186 (875)
T ss_pred ccCCCCCCCCeeEEEEEEEccccCeEEecCCccccceeccCCeEEEEEEeCCC
Confidence 999999999999999999999 58 5799999887765567788899998866
No 6
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.78 E-value=1.6e-18 Score=155.20 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=87.6
Q ss_pred CeEEEEEEEeccccceEE-EeecccceeEEeeCCCCcEEEEEEEEEEEec--cc---ccccceeeEEEEeeccccCCCee
Q psy7198 1 MTLIKVLIHRDLWGFFLI-LQKRSHDRQVDLTGGPDEVYLSGLPDREWLA--LD---FHLAHHFRYIIMTKFDPTGARQA 74 (128)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~y~L~I~y~g~i~--~~---~~~~g~~~~~~~T~fep~~AR~~ 74 (128)
|+|.+|.++|. .+. ......+..|.|...+ +.|+|+|.|.+... .. ++..+ ++++|||||++||++
T Consensus 49 L~I~sV~v~g~----~~~~~~~~~~~~~L~I~~~~-~~~~l~i~~~~~p~~n~~l~GlY~s~---~~~~TQ~Ep~gaR~i 120 (863)
T TIGR02414 49 LKLLSIAIDGK----PLAAGDYQLDDETLTIASVP-ESFTLEIETEIHPEENTSLEGLYKSG---GNFCTQCEAEGFRRI 120 (863)
T ss_pred CEEEEEEECCE----ecCcceEEEcCCEEEEeeCC-ccEEEEEEEEeecccCCCCeEEEEeC---CeEEEEecCCCCCcC
Confidence 56778887532 221 1122334567777654 67999999976444 22 22222 467899999999999
Q ss_pred eeeCCCCCCcceEEEEEEecCC-c-EEEecCcccceEEeCCCceEEEeecCCCc
Q psy7198 75 FPCFDEPIHKTTFNVSVTHSKK-Y-SFLWNKNKLGTRLSGKPKSLKDSEPSISQ 126 (128)
Q Consensus 75 FPCfDeP~~KAtF~l~v~~p~~-~-~alSN~~~~~~~~~~~~~~~~~F~~TP~~ 126 (128)
|||||+|.+||+|+++|++|++ | .++|||+++.....++++.+++|+.||+.
T Consensus 121 fpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pm 174 (863)
T TIGR02414 121 TYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGELPDGRHWAEWEDPFPK 174 (863)
T ss_pred CCCCCCCCCceEEEEEEEECCCcceEEEeCCccccceecCCCeEEEEEeCCCCc
Confidence 9999999999999999999986 7 56899988766565778899999999764
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.72 E-value=4.5e-17 Score=145.80 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred CcEEEEEEEEEEEecc-c---ccccc-eeeEEEEeeccccCCCeeeeeCCCCCCcceEEEEEEecCCcEEEecCcccceE
Q psy7198 35 DEVYLSGLPDREWLAL-D---FHLAH-HFRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTR 109 (128)
Q Consensus 35 ~~~y~L~I~y~g~i~~-~---~~~~g-~~~~~~~T~fep~~AR~~FPCfDeP~~KAtF~l~v~~p~~~~alSN~~~~~~~ 109 (128)
...+.|.+.+.+..+. . ++..+ ..++++.||||+.+||+||||+|+|+.||+|+++|..++++.+||||+.....
T Consensus 104 ~~~l~i~~~~~~~~s~~~~~Gly~~~~~~~~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~ 183 (859)
T COG0308 104 PFTLAITYEFTGPVSNDTLEGLYRSGYGGKPYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGG 183 (859)
T ss_pred CccEEEEEEecccccCccccceeecCCCCCeeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCccccc
Confidence 4577777788876663 2 23222 22578899999999999999999999999999999999999999999999888
Q ss_pred EeCCCceEEEeecCCCc
Q psy7198 110 LSGKPKSLKDSEPSISQ 126 (128)
Q Consensus 110 ~~~~~~~~~~F~~TP~~ 126 (128)
..++++.++.|+.||+-
T Consensus 184 ~~~~g~~~~~f~~~~~m 200 (859)
T COG0308 184 TLVDGRKIVKFEDTPPM 200 (859)
T ss_pred cccCCcEEEEEcCCCCc
Confidence 88777999999999874
No 8
>KOG1047|consensus
Probab=99.05 E-value=3.3e-10 Score=97.07 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=86.3
Q ss_pred eEEEEEEEeccccceEEEeeccc-c--eeEEeeC---CCCcEEEEEEEEEEEec-cccc------ccceeeEEEEeeccc
Q psy7198 2 TLIKVLIHRDLWGFFLILQKRSH-D--RQVDLTG---GPDEVYLSGLPDREWLA-LDFH------LAHHFRYIIMTKFDP 68 (128)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~-~--~~l~l~~---~~~~~y~L~I~y~g~i~-~~~~------~~g~~~~~~~T~fep 68 (128)
.|.+|.|++... .+.+...+.. + ..|.++. .+++...|.|.|.-..+ ..+. ..|..+.++.||+|.
T Consensus 59 ~i~~v~i~~~~~-~~~i~~~~~~~g~~~~~~l~~~~~~a~~~~~l~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQA 137 (613)
T KOG1047|consen 59 SIRNVTINGEEP-PFRIGFRQPFLGSGQKLVLPAPSSKAGERLQLLIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQA 137 (613)
T ss_pred eeEEeeccCCCC-CCccCcccCCCCCceEEEeccccccccCceEEEEEEeccCCcceeEEeccccccCCCCCchHHHHHH
Confidence 578899988876 4444444443 2 2344544 36788999999984333 2332 456666778999999
Q ss_pred cCCCeeeeeCCCCCCcceEEEEEEecCCcEEEecCcccceEEeCCCceEEEee
Q psy7198 69 TGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTRLSGKPKSLKDSE 121 (128)
Q Consensus 69 ~~AR~~FPCfDeP~~KAtF~l~v~~p~~~~alSN~~~~~~~~~~~~~~~~~F~ 121 (128)
..||.+|||+|.|+.|.||+..|.+|.++.+++..-...++...++.....|+
T Consensus 138 IhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~~~~~~~~~f~f~ 190 (613)
T KOG1047|consen 138 IHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEKPGSNGRAIFRFK 190 (613)
T ss_pred hHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccCCCCCCcceEEEE
Confidence 99999999999999999999999999999998777554454444555555564
No 9
>KOG1932|consensus
Probab=98.45 E-value=9.4e-07 Score=80.74 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=63.5
Q ss_pred CcEEEEEEEEEE-Eeccccc---c----cceeeEEEEeeccc-cCCCeeeeeCCCCCCcceEEEEEEecCCcEEEecCcc
Q psy7198 35 DEVYLSGLPDRE-WLALDFH---L----AHHFRYIIMTKFDP-TGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNK 105 (128)
Q Consensus 35 ~~~y~L~I~y~g-~i~~~~~---~----~g~~~~~~~T~fep-~~AR~~FPCfDeP~~KAtF~l~v~~p~~~~alSN~~~ 105 (128)
.....|.|+|+. ....+.. . +.....+..++.+= .+||.||||.|.+.-+++|+|.++.|++++++|++.+
T Consensus 140 ~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geL 219 (1180)
T KOG1932|consen 140 LKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGEL 219 (1180)
T ss_pred ccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhh
Confidence 345567788875 3444433 1 12222333444443 5599999999999999999999999999999999999
Q ss_pred cceEEeC-CCceEEEeecCCCcc
Q psy7198 106 LGTRLSG-KPKSLKDSEPSISQC 127 (128)
Q Consensus 106 ~~~~~~~-~~~~~~~F~~TP~~~ 127 (128)
.+..... .......|.-|-+-|
T Consensus 220 l~~v~~~D~~Kkt~~ys~tvPvA 242 (1180)
T KOG1932|consen 220 LEQVETPDLRKKTYHYSLTVPVA 242 (1180)
T ss_pred hheeecccccccEEEEEEeccCC
Confidence 8765433 345566666555544
No 10
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=67.30 E-value=21 Score=25.32 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=30.6
Q ss_pred eEEEEEEEeccccceEEEeecccce--------------eEEeeCCC-CcEEEEEEEEE
Q psy7198 2 TLIKVLIHRDLWGFFLILQKRSHDR--------------QVDLTGGP-DEVYLSGLPDR 45 (128)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~--------------~l~l~~~~-~~~y~L~I~y~ 45 (128)
.|.||+|+.|+.-.+...+-..... .+.++..+ .+.|+|.++=.
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~ 100 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRAT 100 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEE
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEe
Confidence 4899999999876687766665533 25666666 78999987443
No 11
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=52.49 E-value=29 Score=19.82 Aligned_cols=23 Identities=9% Similarity=-0.074 Sum_probs=19.0
Q ss_pred EeeCCCCcEEEEEEEEEEEeccc
Q psy7198 29 DLTGGPDEVYLSGLPDREWLALD 51 (128)
Q Consensus 29 ~l~~~~~~~y~L~I~y~g~i~~~ 51 (128)
++.+..+|.|.|.++.++...++
T Consensus 6 nW~FT~PG~Y~l~~~a~~~~~~G 28 (41)
T TIGR03769 6 NWVFTKPGTYTLTVQATATLTDG 28 (41)
T ss_pred ceeeCCCeEEEEEEEEEEEeCCC
Confidence 56778899999999999977644
No 12
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=38.84 E-value=13 Score=20.67 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=8.3
Q ss_pred eeeeeCCCCC
Q psy7198 73 QAFPCFDEPI 82 (128)
Q Consensus 73 ~~FPCfDeP~ 82 (128)
.|+||-+++.
T Consensus 25 ~WMPC~~h~e 34 (34)
T PF12518_consen 25 KWMPCSNHKE 34 (34)
T ss_pred ccccCcccCC
Confidence 7999998863
No 13
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.25 E-value=97 Score=18.24 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=15.5
Q ss_pred eEEeeCCCCcEEEEEEEEEE
Q psy7198 27 QVDLTGGPDEVYLSGLPDRE 46 (128)
Q Consensus 27 ~l~l~~~~~~~y~L~I~y~g 46 (128)
.+.++.+++|.|+|.|.-..
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EEEEES--SEEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEEC
Confidence 88899999999999997554
No 14
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=33.75 E-value=51 Score=19.68 Aligned_cols=23 Identities=4% Similarity=0.195 Sum_probs=18.2
Q ss_pred CCCeeeeeCCCCCCcceEEEEEE
Q psy7198 70 GARQAFPCFDEPIHKTTFNVSVT 92 (128)
Q Consensus 70 ~AR~~FPCfDeP~~KAtF~l~v~ 92 (128)
.|+++|...-+|.-++.|..+|.
T Consensus 31 ~s~R~y~S~~~p~~~~~Y~~~Il 53 (54)
T PF05964_consen 31 KSSRLYWSTVDPRRRCRYTCEIL 53 (54)
T ss_dssp EEEEEEE-SS-TTSEEEEEEEEE
T ss_pred EEEEEEccccCCCCEEEEEEEEe
Confidence 47899999999999999998874
No 15
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=32.08 E-value=1.3e+02 Score=21.22 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=23.6
Q ss_pred ccceEEEeeccc-ceeEEee--CCCCcEEEEEEEEEEEecc
Q psy7198 13 WGFFLILQKRSH-DRQVDLT--GGPDEVYLSGLPDREWLAL 50 (128)
Q Consensus 13 ~~~~~~~~~~~~-~~~l~l~--~~~~~~y~L~I~y~g~i~~ 50 (128)
.|+.+....... .-++.+. ....+.|.|+|+|.+.-+.
T Consensus 26 GGdlv~l~~~~~~~~~~~v~~~~~~~~~YrIRiRYAs~~~~ 66 (143)
T PF03944_consen 26 GGDLVKLSNSGSLSIKIRVTINNSSSQKYRIRIRYASNSNG 66 (143)
T ss_dssp SS-EEEESSSCEECEEEEEEESSSSTEEEEEEEEEEESS-E
T ss_pred CCcEEEEcCCCceEEEEEEEecCCCCceEEEEEEEEECCCc
Confidence 455554444433 2455555 7788999999999985443
No 16
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=30.76 E-value=1.4e+02 Score=24.21 Aligned_cols=42 Identities=10% Similarity=-0.125 Sum_probs=28.1
Q ss_pred eEEEEEEEeccccceEEEeecccc-e-------eEEeeCCCCcEEEEEEEE
Q psy7198 2 TLIKVLIHRDLWGFFLILQKRSHD-R-------QVDLTGGPDEVYLSGLPD 44 (128)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~-~-------~l~l~~~~~~~y~L~I~y 44 (128)
.|++|+|+.|+.-++...+...-. . .+.+... .+.|+|.++=
T Consensus 237 ~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~-~G~~~l~vRA 286 (317)
T cd02110 237 GIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLP-PGEYELVARA 286 (317)
T ss_pred CEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcC-CCcEEEEEEE
Confidence 489999999977677776664322 1 1344443 6888888844
No 17
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.81 E-value=1.7e+02 Score=24.44 Aligned_cols=43 Identities=12% Similarity=-0.042 Sum_probs=27.6
Q ss_pred eEEEEEEEeccccceEEEeecc-ccee------EEeeCCCCcEEEEEEEE
Q psy7198 2 TLIKVLIHRDLWGFFLILQKRS-HDRQ------VDLTGGPDEVYLSGLPD 44 (128)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~-~~~~------l~l~~~~~~~y~L~I~y 44 (128)
.|++|+|+.|+.-++-..+-.. .++. +.+.....+.|+|..+=
T Consensus 289 ~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA 338 (367)
T cd02114 289 GIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRA 338 (367)
T ss_pred CEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEE
Confidence 4899999999765676665532 2331 34444456788887744
No 18
>PHA03370 virion protein US2; Provisional
Probab=28.45 E-value=13 Score=29.69 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.1
Q ss_pred eEEEEeeccccCCCeeeeeCCCCCCcceEEE
Q psy7198 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNV 89 (128)
Q Consensus 59 ~~~~~T~fep~~AR~~FPCfDeP~~KAtF~l 89 (128)
.|-+-..++|.-+-.|=||||++..||-|.=
T Consensus 168 ~W~lPd~~~~~~ts~W~P~~~~~~~k~~~~~ 198 (269)
T PHA03370 168 PWAIPDGIQTLLTSTWEPKFDTTEDKAHFED 198 (269)
T ss_pred cccCCCCCCcceeccCCCCCCchhhhhhhhc
Confidence 3556677888899999999999999999863
No 19
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=28.36 E-value=1.7e+02 Score=22.57 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=26.8
Q ss_pred EEEEEeccccceEEEeeccc--ceeE---EeeCCCCcEEEEEEEE
Q psy7198 5 KVLIHRDLWGFFLILQKRSH--DRQV---DLTGGPDEVYLSGLPD 44 (128)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~~~--~~~l---~l~~~~~~~y~L~I~y 44 (128)
+|.|..++.+....-..... +... .+.+.+|..|.|+|.+
T Consensus 64 ~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 64 TVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVET 108 (298)
T ss_pred EEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEE
Confidence 57786666666555444433 3333 3467799999999998
No 20
>PF09149 DUF1935: Domain of unknown function (DUF1935); InterPro: IPR015232 This entry represents a conserved region found in various bacterial and eukaryotic hypothetical proteins, as well as in the cysteine protease calpain. Its function has not, as yet, been defined. ; PDB: 1R75_A 2FE0_A.
Probab=26.34 E-value=1.2e+02 Score=20.74 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=9.7
Q ss_pred ccccCC-CeeeeeCCCCC
Q psy7198 66 FDPTGA-RQAFPCFDEPI 82 (128)
Q Consensus 66 fep~~A-R~~FPCfDeP~ 82 (128)
.+|+.. -.++|||++..
T Consensus 3 G~P~v~~~~v~~cF~~~~ 20 (104)
T PF09149_consen 3 GGPSVSGGEVYPCFKERN 20 (104)
T ss_dssp ---S---SEEEESSTTTT
T ss_pred CCCCcCCCEEEEeecCCC
Confidence 356655 68999999953
No 21
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=24.02 E-value=1.3e+02 Score=21.10 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=21.8
Q ss_pred eCCCCCCcceEEEEEEecCCcEEEec-CcccceEEeCCCceEEEee
Q psy7198 77 CFDEPIHKTTFNVSVTHSKKYSFLWN-KNKLGTRLSGKPKSLKDSE 121 (128)
Q Consensus 77 CfDeP~~KAtF~l~v~~p~~~~alSN-~~~~~~~~~~~~~~~~~F~ 121 (128)
-.+.|..++.|+|.+-....+....+ +...-.....++...++|+
T Consensus 120 ~~~~pv~~~~~~v~~P~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~ 165 (177)
T PF12969_consen 120 QSSIPVRRSRFTVIVPKDLPLNYKEYNGDPAPEEKEEGGYTTYTWE 165 (177)
T ss_dssp -SS--EEEEEEEEEEETTS--EEEEET-----EEEEETTEEEEEEE
T ss_pred ccCCceeeEEEEEEeCCCCeEEEEeeCCCCCcceEEcCCcEEEEEE
Confidence 34557778887777777667776555 5444444444555555554
No 22
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=21.79 E-value=1.3e+02 Score=20.39 Aligned_cols=19 Identities=16% Similarity=-0.094 Sum_probs=15.1
Q ss_pred EEeeCCCCcEEEEEEEEEE
Q psy7198 28 VDLTGGPDEVYLSGLPDRE 46 (128)
Q Consensus 28 l~l~~~~~~~y~L~I~y~g 46 (128)
..+.+.+|+.|.|+|.|..
T Consensus 94 ~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 94 STLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred eeEEEeCCcEEEEEEEEEe
Confidence 4577778889999998865
No 23
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=20.98 E-value=2.3e+02 Score=17.90 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=9.5
Q ss_pred EeeCCCCcEEEEEEEEEE
Q psy7198 29 DLTGGPDEVYLSGLPDRE 46 (128)
Q Consensus 29 ~l~~~~~~~y~L~I~y~g 46 (128)
.......|.|.|.|.|.+
T Consensus 75 ~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 75 SYTPTEPGKYKISVKING 92 (101)
T ss_dssp EEEESSSEEEEEEEEESS
T ss_pred EEEeCccEeEEEEEEECC
Confidence 334444556666666554
No 24
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=20.91 E-value=1.7e+02 Score=17.65 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=10.8
Q ss_pred ceeEEeeCCCCcEEEEEE
Q psy7198 25 DRQVDLTGGPDEVYLSGL 42 (128)
Q Consensus 25 ~~~l~l~~~~~~~y~L~I 42 (128)
++.+.++.++.|.|-|+|
T Consensus 51 ~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 51 DESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEEESSSEEEEEEE
T ss_pred ccEEEEEcCCCEEEEEEE
Confidence 345566666666666665
Done!