RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7198
(128 letters)
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 73.9 bits (182), Expect = 1e-16
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTRLSGK 113
+I T F+ T AR+ FPC D P +K F ++V K Y + N +S +
Sbjct: 93 NGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEVSER 147
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 70.2 bits (172), Expect = 2e-15
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 58 FRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN 102
R + +T F+PT AR AFPCFDEP+ K F++ + ++ L N
Sbjct: 191 TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSN 235
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 69.0 bits (169), Expect = 5e-15
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 57 HFRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN 102
R + T+F+PT AR AFPCFDEP K +F++ + ++ + N
Sbjct: 128 ELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISN 173
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 55.3 bits (133), Expect = 4e-10
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKY 97
+ II+++ + TG R+ D P ++V+VT K+
Sbjct: 116 KNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEK 154
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 54.4 bits (131), Expect = 7e-10
Identities = 13/60 (21%), Positives = 22/60 (36%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTRLSGKPKSLK 118
+ ++ R PC D P K T+ V+ K+ L + + G + S K
Sbjct: 134 HPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRK 193
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 54.0 bits (130), Expect = 9e-10
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWN 102
+ + ++ AR P D P + T+ +T K + +
Sbjct: 138 KPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMS 181
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 52.1 bits (125), Expect = 4e-09
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 59 RYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKY 97
+ + ++ + AR FPCFD P K+TF S+
Sbjct: 139 KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPV 177
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 48.0 bits (114), Expect = 1e-07
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 60 YIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKY 97
+ T+ +P G R+ D P + F ++ KK
Sbjct: 110 GNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKR 147
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 47.6 bits (113), Expect = 2e-07
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 56 HHFRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKY 97
+ + T+ + G R D P F + K
Sbjct: 131 YQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIK 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.019
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 36/116 (31%)
Query: 17 LILQKRSH---DRQVD--LTGGPDEVYLSGLPDREWLALDFHLAHHFRYIIMTKFDPTGA 71
+ + SH +QV+ L G + +SG P +L + L R P+G
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP----QSL-YGLNLTLRKA----KAPSGL 402
Query: 72 RQA-FPCFDE--PIHKTTFNVSVT---HS--------------KKYSFLWNKNKLG 107
Q+ P F E F + V HS K + +N +
Sbjct: 403 DQSRIP-FSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.073
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 8/27 (29%)
Query: 103 KNKLGTRLSGKPKSLK----DSEPSIS 125
K L +L SLK DS P+++
Sbjct: 19 KQAL-KKLQA---SLKLYADDSAPALA 41
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA
polymerase, picornavirus, protease, hydrolase,
transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4
e.8.1.4
Length = 644
Score = 30.1 bits (67), Expect = 0.17
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 43 PDREWLALDFHLAHHFRYIIMTKFDPTGARQAFPCFDEPIHKTTF--NVSVTHSKKYSFL 100
PD W + + T +D + + F + K F V +S
Sbjct: 397 PDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHH 456
Query: 101 WNKNKL----GTRLSGKP 114
KNK G SG
Sbjct: 457 LYKNKTYCVKGGMPSGCS 474
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.48
Identities = 20/122 (16%), Positives = 31/122 (25%), Gaps = 37/122 (30%)
Query: 8 IHRDLWGFFLILQKRS-----HDRQVDLTGGPDEVYLSGLPDREWLALD----FHLAHHF 58
I + + + K H VD P L LD H+ HH
Sbjct: 428 IP-SI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP---PYLDQYFYSHIGHHL 481
Query: 59 RYIIMT-KFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTRLSGKPKSL 117
+ I + R F D + FL K + + S+
Sbjct: 482 KNIEHPERMT--LFRMVF--LD-----------------FRFLEQKIRHDSTAWNASGSI 520
Query: 118 KD 119
+
Sbjct: 521 LN 522
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Length = 466
Score = 28.6 bits (63), Expect = 0.53
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 43 PDREWLALDFHLAHHFRYIIMTKFDPTGARQAFPCFDEPIHKTTFNVSV-THSKKYSFLW 101
PD W + + H + FD + + F C ++ + K F S S +
Sbjct: 214 PDVFWSVIPCLMDGHLMAFDYSNFDASLSPVWFVCLEKVLTKLGFAGSSLIQSICNTHHI 273
Query: 102 NKNKL----GTRLSGKP 114
++++ G SG
Sbjct: 274 FRDEIYVVEGGMPSGCS 290
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent,
polym terminus, transferase; 2.00A {Human poliovirus 1}
SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A*
2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A
3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A
3cdu_A 3cdw_A
Length = 461
Score = 27.5 bits (60), Expect = 1.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 43 PDREWLALDFHLAHHFRYIIMTKFDPTGARQAF 75
PD W + + T +D + + F
Sbjct: 214 PDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWF 246
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A*
1xr6_A
Length = 460
Score = 26.3 bits (57), Expect = 3.1
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 43 PDREWLALDFHLAHHFRYII-MTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLW 101
P+ W + L T +D + F + +FN ++ + S
Sbjct: 214 PETFWSKIPLMLDGDCIMAFDYTNYDGSIHPIWFKALGMVLDNLSFNPTLINRLCNSKHI 273
Query: 102 NKNKL----GTRLSGKP 114
K+ G SG
Sbjct: 274 FKSTYYEVEGGVPSGCS 290
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA;
1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X*
1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A*
3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Length = 592
Score = 25.6 bits (57), Expect = 5.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 35 DEVYLSGLPDREWLALDFHLAH 56
D +YL+ DRE A+ +HL
Sbjct: 104 DHIYLATDLDREGEAIAWHLRE 125
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 25.7 bits (57), Expect = 5.8
Identities = 1/46 (2%), Positives = 12/46 (26%)
Query: 77 CFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGTRLSGKPKSLKDSEP 122
++E + + + +++ + ++
Sbjct: 264 LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN 309
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 25.3 bits (56), Expect = 6.8
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 4/38 (10%)
Query: 28 VDLTGGPDEVYLSGLPDREWL---ALDFHLAHHFRYII 62
DL P + L L L + II
Sbjct: 123 FDLMLLPKLTRSWTFENESRLLATLLA-PLKSDYDLII 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.450
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,019,309
Number of extensions: 111461
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 23
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.6 bits)