RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7198
         (128 letters)



>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 208

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 60  YIIMTKFDPTGARQAFPCFDEPIHKTTFNVSVTHSKKYSFLWNKNKLGT 108
             + ++      R   PC D P  K T+   V+  K+   L +  + G 
Sbjct: 129 PYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGE 177


>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
           strain Mahoney [TaxId: 12080]}
          Length = 461

 Score = 25.0 bits (54), Expect = 3.3
 Identities = 6/33 (18%), Positives = 11/33 (33%)

Query: 43  PDREWLALDFHLAHHFRYIIMTKFDPTGARQAF 75
           PD  W  +   +         T +D + +   F
Sbjct: 214 PDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWF 246


>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
           [TaxId: 562]}
          Length = 620

 Score = 24.2 bits (51), Expect = 6.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 35  DEVYLSGLPDREWLALDFHLAHHFR 59
            E+  +G PDRE   L   +  + +
Sbjct: 96  SEIVHAGDPDREGQLLVDEVLDYLQ 120


>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies
           virus, strain CVS-11 [TaxId: 11292]}
          Length = 111

 Score = 23.3 bits (50), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 89  VSVTHSKKYSFLWNKNKLG 107
           V++ +SKK+  L   +KL 
Sbjct: 81  VALANSKKFQLLVEADKLS 99


>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
           epimerase/reductase (GDP-fucose synthetase) {Escherichia
           coli [TaxId: 562]}
          Length = 315

 Score = 23.7 bits (50), Expect = 7.9
 Identities = 4/35 (11%), Positives = 10/35 (28%)

Query: 46  EWLALDFHLAHHFRYIIMTKFDPTGARQAFPCFDE 80
             L   ++  +   Y  +   +  G    F   + 
Sbjct: 143 IKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNS 177


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.450 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 501,916
Number of extensions: 22023
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 11
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.9 bits)