BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7199
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From Phanerochaete
           Chrysosporium. Catalytic Module At 1.32 Ang Resolution
 pdb|1H46|X Chain X, The Catalytic Module Of Cel7d From Phanerochaete
           Chrysosporium As A Chiral Selector: Structural Studies
           Of Its Complex With The B-Blocker (R)-Propranolol
 pdb|1Z3T|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
           Cel7d (Cbh58) In Complex With Cellobiose
 pdb|1Z3V|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
           Cel7d (Cbh58) In Complex With Lactose
 pdb|1Z3W|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
           Cel7d (Cbh58) In Complex With Cellobioimidazole
          Length = 431

 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 71  TTGAPGGLAKQIPGSKLVPSNLGFG 95
           T+G P  +  Q+P S++V SN+ FG
Sbjct: 397 TSGVPSDVESQVPNSQVVFSNIKFG 421


>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
           Fas Ii
 pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
           Fas Ii
          Length = 344

 Score = 26.6 bits (57), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 83  PGSKLVPSNLGFGTGDAIPTPESVPARKTSIIQPKFTPLHTIPSTPTSGINP 134
           PG  ++P+N G GT       E+V + +  I  P   PL    S  T G+NP
Sbjct: 95  PGDWVIPANAGLGTW----RTEAVFSEEALIQVPSDIPLQ---SAATLGVNP 139


>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
           Reductase (Cgi- 63)
          Length = 357

 Score = 26.6 bits (57), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 83  PGSKLVPSNLGFGTGDAIPTPESVPARKTSIIQPKFTPLHTIPSTPTSGINP 134
           PG  ++P+N G GT       E+V + +  I  P   PL    S  T G+NP
Sbjct: 108 PGDWVIPANAGLGTW----RTEAVFSEEALIQVPSDIPLQ---SAATLGVNP 152


>pdb|3PIC|A Chain A, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
           Hypocrea Jecorina
 pdb|3PIC|B Chain B, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
           Hypocrea Jecorina
 pdb|3PIC|C Chain C, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
           Hypocrea Jecorina
          Length = 375

 Score = 25.8 bits (55), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 69  KQTTGAPGGLAKQIPGSKLVPSNLGFG------TGDAIPTPESVPARK---TSIIQPKFT 119
           +QT+GA G     +PGS  + SN           GD + T +    R+   + +IQ    
Sbjct: 1   QQTSGAGGATCSALPGSITLRSNAKLNDLFTMFNGDKVTTKDKFSCRQAEMSELIQRY-- 58

Query: 120 PLHTIPSTPTS 130
            L T+P  P++
Sbjct: 59  ELGTLPGRPST 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,673,447
Number of Sequences: 62578
Number of extensions: 186447
Number of successful extensions: 240
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 11
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)