Query psy7199
Match_columns 146
No_of_seqs 106 out of 128
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 20:41:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4as2_A Phosphorylcholine phosp 14.5 52 0.0018 27.0 1.0 29 44-72 241-275 (327)
2 2do3_A Transcription elongatio 14.0 48 0.0016 22.5 0.5 16 57-72 15-30 (69)
3 1ksi_A Copper amine oxidase; P 13.0 34 0.0011 31.5 -0.7 13 57-69 291-303 (642)
4 1w6g_A Phenylethylamine oxidas 12.3 33 0.0011 31.7 -0.9 14 57-70 292-305 (646)
5 1spu_A Copper amine oxidase; o 12.2 37 0.0013 31.6 -0.7 13 57-69 379-391 (727)
6 1bpo_A Protein (clathrin); cla 11.5 1.1E+02 0.0038 27.6 2.2 36 28-72 349-384 (494)
7 3cm0_A Adenylate kinase; ATP-b 10.8 1.2E+02 0.0041 20.9 1.8 24 44-67 15-40 (186)
8 2yhe_A SEC-alkyl sulfatase; hy 13.7 59 0.002 29.5 0.0 20 53-72 465-484 (668)
9 4ffe_X CPXV018 protein; viral 10.1 99 0.0034 23.7 1.2 14 52-68 125-138 (151)
10 3tj7_A GBAA_1210 protein; stru 9.3 75 0.0026 24.3 0.3 16 57-72 38-53 (195)
No 1
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=14.53 E-value=52 Score=26.98 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=18.5
Q ss_pred CchHHHHHHHhcCCC----Cccc--hhhHHhhhcc
Q psy7199 44 GHSTFLQKKLAKGQK----YFDS--GDYQMAKQTT 72 (146)
Q Consensus 44 g~s~~L~krLqkgrK----YFDS--GDYaMaKa~~ 72 (146)
|+..-+++.|.+||. +.|| |||.|-....
T Consensus 241 GK~~~I~~~i~~g~~Pi~a~Gns~dgD~~ML~~~~ 275 (327)
T 4as2_A 241 GKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGT 275 (327)
T ss_dssp HHHHHHHHHTCSSCCCSEEEESCHHHHHHHHHHTS
T ss_pred ccHHHHHHHHhhCCCCeEEecCCCCCCHHHHhccc
Confidence 344456666655544 6898 8999985433
No 2
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=13.98 E-value=48 Score=22.53 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=11.8
Q ss_pred CCCccchhhHHhhhcc
Q psy7199 57 QKYFDSGDYQMAKQTT 72 (146)
Q Consensus 57 rKYFDSGDYaMaKa~~ 72 (146)
||||.-||.--.-+++
T Consensus 15 rK~F~~GDHVkVi~G~ 30 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGR 30 (69)
T ss_dssp CSSCCTTCEEEESSST
T ss_pred eeeccCCCeEEEeccE
Confidence 7999999976554443
No 3
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=12.97 E-value=34 Score=31.50 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=10.5
Q ss_pred CCCccchhhHHhh
Q psy7199 57 QKYFDSGDYQMAK 69 (146)
Q Consensus 57 rKYFDSGDYaMaK 69 (146)
+.|||+|||-|-.
T Consensus 291 k~~fD~GeyG~G~ 303 (642)
T 1ksi_A 291 KTFFDSGEFGFGL 303 (642)
T ss_dssp CEECHHHHHCTTT
T ss_pred ceeeeccccCccc
Confidence 5699999998844
No 4
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=12.26 E-value=33 Score=31.65 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=11.3
Q ss_pred CCCccchhhHHhhh
Q psy7199 57 QKYFDSGDYQMAKQ 70 (146)
Q Consensus 57 rKYFDSGDYaMaKa 70 (146)
+.|||+|||-|-..
T Consensus 292 k~afD~GeyG~G~~ 305 (646)
T 1w6g_A 292 QNYFDTGEYLVGQY 305 (646)
T ss_dssp CEEECCCCCCGGGG
T ss_pred ceeeeccCcCCccc
Confidence 57999999998553
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=12.21 E-value=37 Score=31.59 Aligned_cols=13 Identities=54% Similarity=1.045 Sum_probs=10.8
Q ss_pred CCCccchhhHHhh
Q psy7199 57 QKYFDSGDYQMAK 69 (146)
Q Consensus 57 rKYFDSGDYaMaK 69 (146)
+.|||+|||-|-.
T Consensus 379 k~~fD~GeyG~G~ 391 (727)
T 1spu_A 379 KAYLDSGDYGMGT 391 (727)
T ss_dssp CEECHHHHHCTTT
T ss_pred ceeeeccCcCCcc
Confidence 5799999999844
No 6
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=11.48 E-value=1.1e+02 Score=27.64 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCCCCCchHHHHHHHhcCCCCccchhhHHhhhcc
Q psy7199 28 AKLKAKYAFKSGPAIGGHSTFLQKKLAKGQKYFDSGDYQMAKQTT 72 (146)
Q Consensus 28 ~KLk~kYg~L~~kP~~g~s~~L~krLqkgrKYFDSGDYaMaKa~~ 72 (146)
.+|-.+|+ |+ |.-+|..+|+++ ||..|||.=|.--.
T Consensus 349 ~~lA~R~~-Lp-----GAd~L~~~~F~~---l~~~g~y~~AA~~a 384 (494)
T 1bpo_A 349 LRMAVRNN-LA-----GAEELFARKFNA---LFAQGNYSEAAKVA 384 (494)
T ss_dssp HHHHHHTT-CS-----SCHHHHHHHHHH---HHHTTCHHHHHHHH
T ss_pred HHHHHhcC-Cc-----cHHHHHHHHHHH---HHHcCCHHHHHHHH
Confidence 45555654 64 788999999987 99999998765443
No 7
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=10.79 E-value=1.2e+02 Score=20.87 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=15.0
Q ss_pred CchHHHHHHHhc--CCCCccchhhHH
Q psy7199 44 GHSTFLQKKLAK--GQKYFDSGDYQM 67 (146)
Q Consensus 44 g~s~~L~krLqk--grKYFDSGDYaM 67 (146)
.|+.-+.++|.+ |-.|+|+||+.-
T Consensus 15 sGKST~~~~La~~l~~~~i~~d~~~~ 40 (186)
T 3cm0_A 15 AGKGTQASRLAQELGFKKLSTGDILR 40 (186)
T ss_dssp SCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred CCHHHHHHHHHHHhCCeEecHHHHHH
Confidence 344444456654 678899888653
No 8
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=13.71 E-value=59 Score=29.48 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=14.8
Q ss_pred HhcCCCCccchhhHHhhhcc
Q psy7199 53 LAKGQKYFDSGDYQMAKQTT 72 (146)
Q Consensus 53 LqkgrKYFDSGDYaMaKa~~ 72 (146)
|++.++.||.|||+.+-.-.
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~ 484 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLG 484 (668)
Confidence 34457799999999876543
No 9
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=10.11 E-value=99 Score=23.69 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=11.0
Q ss_pred HHhcCCCCccchhhHHh
Q psy7199 52 KLAKGQKYFDSGDYQMA 68 (146)
Q Consensus 52 rLqkgrKYFDSGDYaMa 68 (146)
||+ |||||-|--|-
T Consensus 125 rl~---kwfd~edci~~ 138 (151)
T 4ffe_X 125 RLK---KWFDGEDCIMH 138 (151)
T ss_dssp HHH---TTCCHHHHHHH
T ss_pred chh---hhcCcchHHHH
Confidence 675 59999998764
No 10
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=9.29 E-value=75 Score=24.34 Aligned_cols=16 Identities=13% Similarity=0.480 Sum_probs=14.3
Q ss_pred CCCccchhhHHhhhcc
Q psy7199 57 QKYFDSGDYQMAKQTT 72 (146)
Q Consensus 57 rKYFDSGDYaMaKa~~ 72 (146)
--|||.-|+.|++++.
T Consensus 38 n~YfDTpd~~L~~~~~ 53 (195)
T 3tj7_A 38 NHYFETPNSSLKEAGS 53 (195)
T ss_dssp EEEEECTTCHHHHTTC
T ss_pred EEEEeCCcHhHHhCCC
Confidence 4799999999999985
Done!