Query psy7199
Match_columns 146
No_of_seqs 106 out of 128
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 20:41:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bpoa1 a.118.1.4 (A:331-487) 25.4 17 0.0012 26.4 2.2 36 28-72 19-54 (157)
2 d2bdta1 c.37.1.25 (A:1-176) Hy 24.4 16 0.0012 22.7 1.7 28 44-71 13-42 (176)
3 d1ckea_ c.37.1.1 (A:) CMP kina 22.1 18 0.0013 23.8 1.7 23 43-65 13-37 (225)
4 d1d6za1 b.30.2.1 (A:301-724) C 20.2 8 0.00058 31.6 -0.7 16 57-72 79-94 (424)
5 d1q3ta_ c.37.1.1 (A:) CMP kina 19.0 21 0.0015 23.9 1.5 23 43-65 13-37 (223)
6 d1rkba_ c.37.1.1 (A:) Adenylat 16.4 29 0.0021 21.6 1.6 28 43-70 14-43 (173)
7 d1ukza_ c.37.1.1 (A:) Uridylat 15.8 29 0.0021 23.0 1.5 23 43-65 18-42 (196)
8 d1ak2a1 c.37.1.1 (A:14-146,A:1 14.9 32 0.0023 22.7 1.5 23 43-65 13-37 (190)
9 d1w2za1 b.30.2.1 (A:207-647) C 13.7 14 0.0011 30.1 -0.7 16 57-72 90-105 (441)
10 d2jmua1 d.63.1.2 (A:2-224) Thi 13.3 22 0.0016 25.2 0.3 16 57-72 36-51 (223)
No 1
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.44 E-value=17 Score=26.43 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCCCCCchHHHHHHHhcCCCCccchhhHHhhhcc
Q psy7199 28 AKLKAKYAFKSGPAIGGHSTFLQKKLAKGQKYFDSGDYQMAKQTT 72 (146)
Q Consensus 28 ~KLk~kYg~L~~kP~~g~s~~L~krLqkgrKYFDSGDYaMaKa~~ 72 (146)
.+|-.+|+ |+ |.-+|...|+.+ +|..|||.=|.--.
T Consensus 19 ~~lA~r~~-Lp-----GAd~l~~~~F~~---lf~~g~y~eAA~~a 54 (157)
T d1bpoa1 19 LRMAVRNN-LA-----GAEELFARKFNA---LFAQGNYSEAAKVA 54 (157)
T ss_dssp HHHHHHTT-CS-----SCHHHHHHHHHH---HHHTTCHHHHHHHH
T ss_pred HHHHHhcC-CC-----ChHHHHHHHHHH---HHHcCCHHHHHHHH
Confidence 56666665 54 788999999987 99999998665443
No 2
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=24.44 E-value=16 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=17.7
Q ss_pred CchHHHHHHHhc--CCCCccchhhHHhhhc
Q psy7199 44 GHSTFLQKKLAK--GQKYFDSGDYQMAKQT 71 (146)
Q Consensus 44 g~s~~L~krLqk--grKYFDSGDYaMaKa~ 71 (146)
.|+.-|.++|++ +..||.+||+-.....
T Consensus 13 sGKTTva~~L~~~~~~~~~~~~d~~~~~~~ 42 (176)
T d2bdta1 13 VGKSTTCKRLAAQLDNSAYIEGDIINHMVV 42 (176)
T ss_dssp SSHHHHHHHHHHHSSSEEEEEHHHHHTTCC
T ss_pred CCHHHHHHHHHHHcCCCEEEehHHHHHHHh
Confidence 444445567765 4577889998755443
No 3
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=22.10 E-value=18 Score=23.85 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=15.0
Q ss_pred CCchHHHHHHHhc--CCCCccchhh
Q psy7199 43 GGHSTFLQKKLAK--GQKYFDSGDY 65 (146)
Q Consensus 43 ~g~s~~L~krLqk--grKYFDSGDY 65 (146)
+.|+.=+.++|.+ |-.|+++||.
T Consensus 13 GSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 13 GAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp TSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCHHHHHHHHHHHhCCcEECHHHH
Confidence 3444444455554 5789999997
No 4
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]}
Probab=20.24 E-value=8 Score=31.60 Aligned_cols=16 Identities=50% Similarity=0.899 Sum_probs=12.8
Q ss_pred CCCccchhhHHhhhcc
Q psy7199 57 QKYFDSGDYQMAKQTT 72 (146)
Q Consensus 57 rKYFDSGDYaMaKa~~ 72 (146)
+.|||+|||-|-....
T Consensus 79 ~~~~D~Ge~G~G~~a~ 94 (424)
T d1d6za1 79 KAYLDSGDYGMGTLTS 94 (424)
T ss_dssp CEECHHHHHCTTTTBC
T ss_pred ceeEeccccCcCcccc
Confidence 5699999999876544
No 5
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=18.99 E-value=21 Score=23.85 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=16.2
Q ss_pred CCchHHHHHHHhc--CCCCccchhh
Q psy7199 43 GGHSTFLQKKLAK--GQKYFDSGDY 65 (146)
Q Consensus 43 ~g~s~~L~krLqk--grKYFDSGDY 65 (146)
+.|+.=+.++|.+ |=.|+++||.
T Consensus 13 GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 13 SSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp CSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCCHHHHHHHHHHHhCCcEECHHHH
Confidence 4555555667766 6789999994
No 6
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=16.43 E-value=29 Score=21.65 Aligned_cols=28 Identities=43% Similarity=0.569 Sum_probs=18.4
Q ss_pred CCchHHHHHHHhc--CCCCccchhhHHhhh
Q psy7199 43 GGHSTFLQKKLAK--GQKYFDSGDYQMAKQ 70 (146)
Q Consensus 43 ~g~s~~L~krLqk--grKYFDSGDYaMaKa 70 (146)
+.|+.-|.++|++ |-.|+|.||+.-...
T Consensus 14 GsGKTTia~~La~~l~~~~i~~~~~~~~~~ 43 (173)
T d1rkba_ 14 GVGKTTLGKELASKSGLKYINVGDLAREEQ 43 (173)
T ss_dssp TSSHHHHHHHHHHHHCCEEEEHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHCCcEEechHHHHHhc
Confidence 3455555566754 678999999865543
No 7
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.79 E-value=29 Score=23.04 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCchHHHHHHHhc--CCCCccchhh
Q psy7199 43 GGHSTFLQKKLAK--GQKYFDSGDY 65 (146)
Q Consensus 43 ~g~s~~L~krLqk--grKYFDSGDY 65 (146)
+.|+.-+.++|.+ |-.|++.||.
T Consensus 18 GSGKsT~a~~La~~~g~~~is~gdl 42 (196)
T d1ukza_ 18 GAGKGTQCEKLVKDYSFVHLSAGDL 42 (196)
T ss_dssp TSSHHHHHHHHHHHSSCEEEEHHHH
T ss_pred CCCHHHHHHHHHHHhCCeEEehhHH
Confidence 4555666677776 6778999985
No 8
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=14.90 E-value=32 Score=22.68 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=14.1
Q ss_pred CCchHHHHHHHhc--CCCCccchhh
Q psy7199 43 GGHSTFLQKKLAK--GQKYFDSGDY 65 (146)
Q Consensus 43 ~g~s~~L~krLqk--grKYFDSGDY 65 (146)
+.|+.-+.++|++ |-.|++.||-
T Consensus 13 GSGKsT~a~~La~~~g~~~i~~gdl 37 (190)
T d1ak2a1 13 GAGKGTQAPKLAKNFCVCHLATGDM 37 (190)
T ss_dssp TSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 3444445556654 5678888874
No 9
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=13.69 E-value=14 Score=30.13 Aligned_cols=16 Identities=31% Similarity=0.764 Sum_probs=12.2
Q ss_pred CCCccchhhHHhhhcc
Q psy7199 57 QKYFDSGDYQMAKQTT 72 (146)
Q Consensus 57 rKYFDSGDYaMaKa~~ 72 (146)
+.|||+|+|-|-....
T Consensus 90 k~~~D~g~yG~G~~a~ 105 (441)
T d1w2za1 90 KTFFDSGEFGFGLSTV 105 (441)
T ss_dssp CEECHHHHHCTTTTBC
T ss_pred ceeEcccCcccccccc
Confidence 5799999998865543
No 10
>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.34 E-value=22 Score=25.21 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=14.1
Q ss_pred CCCccchhhHHhhhcc
Q psy7199 57 QKYFDSGDYQMAKQTT 72 (146)
Q Consensus 57 rKYFDSGDYaMaKa~~ 72 (146)
--|||.-|+.|++++.
T Consensus 36 d~YfDtpd~~L~~~~~ 51 (223)
T d2jmua1 36 DTYYDTSELSLMLSDH 51 (223)
T ss_dssp EEEEECTTSHHHHTTC
T ss_pred EEEEcCCChhHHhCCc
Confidence 5799999999998875
Done!