RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7199
         (146 letters)



>gnl|CDD|147027 pfam04667, Endosulfine, cAMP-regulated phosphoprotein/endosulfine
          conserved region.  Conserved region found in both
          cAMP-regulated phosphoprotein 19 (ARPP-19) and
          Alpha/Beta endosulfine. No function has yet been
          assigned to ARPP-19. Endosulfine is the endogenous
          ligand for the ATP-dependent potassium (K ATP) channels
          which occupy a key position in the control of insulin
          release from the pancreatic beta cell by coupling cell
          polarity to metabolism. In both cases the region
          occupies the majority of the protein.
          Length = 87

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 26 EEAKLKAKYAFKSGPAIGGHSTFLQKKLAKGQKYFDSGDYQMAKQ 70
          +E K+K KY       +      LQKKL + +KYFDSGDY +AK 
Sbjct: 10 QELKIKKKY-----GKLPPKKDPLQKKLQE-RKYFDSGDYALAKA 48


>gnl|CDD|215295 PLN02538, PLN02538, 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase.
          Length = 558

 Score = 28.5 bits (64), Expect = 1.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 2   EVNNENEQPEFAKPNMSALEI-EKAEEAKLKAKYAF 36
           E+ ++N  P   +P M ALEI EKA +A L  K+  
Sbjct: 388 EIPSDNGIPFNVQPKMKALEIAEKARDALLSGKFDQ 423


>gnl|CDD|197336 cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like
           subfamily of the ExoIII family purinic/apyrimidinic (AP)
           endonucleases.  This subfamily includes Neisseria
           meningitides Nape and related proteins. These are
           Escherichia coli exonuclease III (ExoIII)-like AP
           endonucleases and belong to the large EEP
           (exonuclease/endonuclease/phosphatase) superfamily that
           contains functionally diverse enzymes that share a
           common catalytic mechanism of cleaving phosphodiester
           bonds. AP endonucleases participate in the DNA base
           excision repair (BER) pathway. AP sites are one of the
           most common lesions in cellular DNA. During BER the
           damaged DNA is first recognized by DNA glycosylase. AP
           endonucleases then catalyze the hydrolytic cleavage of
           the phosphodiester bond 5' to the AP site, and this is
           followed by the coordinated actions of DNA polymerase,
           deoxyribose phosphatase, and DNA ligase. If left
           unrepaired, AP sites block DNA replication, and have
           both mutagenic and cytotoxic effects. AP endonucleases
           can carry out a variety of excision and incision
           reactions on DNA, including 3'-5' exonuclease,
           3'-deoxyribose phosphodiesterase, 3'-phosphatase, and
           occasionally, nonspecific DNase activities. Different AP
           endonuclease enzymes catalyze the different reactions
           with different efficiences. Many organisms have two AP
           endonucleases, usually one is the dominant AP
           endonuclease, the other has weak AP endonuclease
           activity; for example, Neisseria meningitides Nape and
           NExo. Nape, found in this subfamily, is the dominant AP
           endonuclease. It exhibits strong AP endonuclease
           activity, and also exhibits 3'-5'exonuclease and
           3'-deoxyribose phosphodiesterase activities.
          Length = 253

 Score = 27.2 bits (61), Expect = 3.0
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 25  AEEAKLKAKYAFKSGPAIGGHSTFLQKKLAKGQKYFDSGDYQMAKQT 71
           + + + +AK AF    A   H   L++   K +++   GD+ +A   
Sbjct: 114 SGDERQEAKMAFL--DAFLEH---LKELRRKRREFIVCGDFNIAHTE 155


>gnl|CDD|119424 cd05164, PIKKc, Phosphoinositide 3-kinase-related protein kinase
           (PIKK) subfamily, catalytic domain; The PIKK catalytic
           domain subfamily is part of a larger superfamily that
           includes the catalytic domains of other kinases such as
           the typical serine/threonine/tyrosine protein kinases
           (PKs), aminoglycoside phosphotransferase, choline
           kinase, and RIO kinases. Members include ATM (Ataxia
           telangiectasia mutated), ATR (Ataxia telangiectasia and
           Rad3-related), TOR (Target of rapamycin), SMG-1
           (Suppressor of morphogenetic effect on genitalia-1), and
           DNA-PK (DNA-dependent protein kinase). PIKKs have
           intrinsic serine/threonine kinase activity and are
           distinguished from other PKs by their unique catalytic
           domain, similar to that of lipid PI3K, and their large
           molecular weight (240-470 kDa). They show strong
           preference for phosphorylating serine/threonine residues
           followed by a glutamine and are also referred to as
           (S/T)-Q-directed kinases. They all contain a FATC (FRAP,
           ATM and TRRAP, C-terminal) domain. PIKKs have diverse
           functions including cell-cycle checkpoints, genome
           surveillance, mRNA surveillance, and translation
           control.
          Length = 222

 Score = 27.3 bits (61), Expect = 3.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 91  NLGFGTGDAIPTPESVPARKTSII 114
              F  G  +P PE VP R T  I
Sbjct: 158 GCIFEKGKTLPVPELVPFRLTRNI 181


>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein [General
            function prediction only].
          Length = 1621

 Score = 27.0 bits (60), Expect = 5.4
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 46   STFLQKKLAKGQKYFDSGDYQMAKQTTGAP--GGLAKQIPGSKLVPSNLGF 94
            ST  Q  L    +   +G +   KQ  G    G    +  G+ L  + L F
Sbjct: 1402 STQEQAALLLAARALQAGKWVAQKQVNGEELTGWKGLRRNGNSLQLAPLVF 1452


>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
          Length = 318

 Score = 26.4 bits (58), Expect = 6.1
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 101 PTPESVPARKTSIIQPKFTPLHTIPSTPTSGINPP 135
           P     P R T    P  +P  T PS P  G  PP
Sbjct: 11  PPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPP 45


>gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional.
          Length = 387

 Score = 26.3 bits (58), Expect = 7.4
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 11  EFAKPNMSALEIEKAEEAKLKAKYAFKSGPAIGGHSTFLQK 51
           E ++      E EK+EE K   K+ F + P     S F+++
Sbjct: 128 ELSRRIRKGEEYEKSEELKYCEKFGFPTSP----ESAFMRR 164


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.308    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,412,005
Number of extensions: 647150
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 21
Length of query: 146
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 58
Effective length of database: 7,034,450
Effective search space: 407998100
Effective search space used: 407998100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (24.8 bits)