RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7199
         (146 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 21 EIEKAEEAKLKAKYAFKSGPAIGGHST 47
           ++K + A LK  YA  S PA+   +T
Sbjct: 21 ALKKLQ-ASLK-LYADDSAPALAIKAT 45


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.010
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 9    QPEFAKPNMSALEIEKAEEAKLKAKYAFKSGPAIGGHS 46
              +F +P ++ +E   A    LK+K    +     GHS
Sbjct: 1728 ATQFTQPALTLMEK--AAFEDLKSKGLIPADATFAGHS 1763


>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
           recognition particle, SRP-GTPase, protein targeting,
           cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
           furiosus}
          Length = 443

 Score = 29.4 bits (67), Expect = 0.42
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 20/68 (29%)

Query: 22  IEKAEEAKLKAKYAFKSGPAIGGHSTFLQKKLAKGQKYFDSGDY-----QMAKQTTGAPG 76
           +EK +E + + +   +             ++  +G+  F   D       M K   G   
Sbjct: 303 LEKFKELEKEVEIKEE-----------DIERFLRGK--FTLKDMYAQLEAMRKM--GPLK 347

Query: 77  GLAKQIPG 84
            + + IPG
Sbjct: 348 QILRMIPG 355


>2dba_A Smooth muscle cell associated protein-1, isoform 2;
          tetratricopeptide repeat, structural genomics, NPPSFA;
          NMR {Homo sapiens}
          Length = 148

 Score = 25.8 bits (57), Expect = 3.9
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 6  ENEQPEFAKPNMSALEIEKAEEAKLKAKYAFKSG 39
              P   +P  +       E+ + +    FK G
Sbjct: 9  TVSGPGTPEPRPATPGASSVEQLRKEGNELFKCG 42


>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
           isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
           PDB: 3igy_B* 3nvl_A
          Length = 561

 Score = 26.0 bits (58), Expect = 6.0
 Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)

Query: 14  KPNMSALEI-EKAEEAKLKAKYAF 36
           KP M +  I E A EA     Y  
Sbjct: 393 KPRMQSAAITEAAIEALKSGMYNV 416


>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
          repeat, HSP70, protein binding, chaperone; 1.60A {Homo
          sapiens} SCOP: a.118.8.1
          Length = 118

 Score = 24.8 bits (55), Expect = 7.1
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 22 IEKAEEAKLKAKYAFKSG 39
          +E+  E K K   A   G
Sbjct: 1  MEQVNELKEKGNKALSVG 18


>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center
          for structu genomics, MCSG, tetratricopeptide repeat
          domain; 1.60A {Caenorhabditis elegans}
          Length = 126

 Score = 24.9 bits (55), Expect = 7.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 13 AKPNMSALEIEKAEEAKLKAKYAFKSG 39
          +   ++ +  E A+E K K    FK G
Sbjct: 1  SNARLAYINPELAQEEKNKGNEYFKKG 27


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.308    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0778    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,176,317
Number of extensions: 121772
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 15
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.1 bits)