RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7199
         (146 letters)



>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId:
           34413]}
          Length = 399

 Score = 29.4 bits (66), Expect = 0.14
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 61  DSGDYQMAKQTTGAPGGLAKQIPGSKLVPSNLGFG 95
           D G+     +  GAP  + +  P  ++  +NL +G
Sbjct: 358 DHGEAGPCAKGEGAPSNIVQVEPFPEVTYTNLRWG 392


>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId:
           5507]}
          Length = 400

 Score = 28.6 bits (64), Expect = 0.23
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 61  DSGDYQMAKQTTGAPGGLAKQIPGSKLVPSNLGFG 95
           D G       T G P  + K  P  ++  SN+  G
Sbjct: 358 DQGVAGPCDATEGDPKNIVKVQPNPEVTFSNIRIG 392


>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei,
           Endoglucanase I [TaxId: 51453]}
          Length = 371

 Score = 28.2 bits (63), Expect = 0.40
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 61  DSGDYQMAKQTTGAPGGLAKQIPGSKLVPSNLGFG 95
           DSG+      T G P  +    P + +V SN+ +G
Sbjct: 331 DSGNAGPCSSTEGNPSNILANNPNTHVVFSNIRWG 365


>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 505

 Score = 25.5 bits (55), Expect = 3.5
 Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 4/28 (14%)

Query: 41  AIGGHSTFLQKKLAKGQKYFDSGDYQMA 68
            +GG     ++ L + +  +  G+Y+  
Sbjct: 426 YMGG----AERLLEQARASYARGEYRWV 449


>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
          protein 1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 23.5 bits (50), Expect = 7.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 67 MAKQTTGAPGGLAKQIPGSKLVPSNLGFGTGDA 99
          + +Q+ GA G   +   G+ L   +L    GD 
Sbjct: 1  LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQ 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,873
Number of extensions: 22783
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 9
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (22.8 bits)