BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy72
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And
           Pseudotropine
 pdb|2AE2|B Chain B, Tropinone Reductase-Ii Complexed With Nadp+ And
           Pseudotropine
 pdb|2AE1|A Chain A, Tropinone Reductase-Ii
          Length = 260

 Score = 34.3 bits (77), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 98  QQKQWSTRPFSWLIFAFQGVNFENVEH----HHPLKKILDTGHY---SPVYVAHKVPANV 150
           + K ++   +S ++     +NFE   H     HP  K  + G+    S V  A  VP   
Sbjct: 102 EAKDYTVEDYSLIM----SINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEA 157

Query: 151 ACGPHTHGSWKSLYLCLTFSWCRE----NGYGP 179
             G  T G+   L  CL F W ++    NG GP
Sbjct: 158 VYGA-TKGAMDQLTRCLAFEWAKDNIRVNGVGP 189


>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph
 pdb|1IPE|B Chain B, Tropinone Reductase-Ii Complexed With Nadph
 pdb|1IPF|A Chain A, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
 pdb|1IPF|B Chain B, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
          Length = 259

 Score = 34.3 bits (77), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 98  QQKQWSTRPFSWLIFAFQGVNFENVEH----HHPLKKILDTGHY---SPVYVAHKVPANV 150
           + K ++   +S ++     +NFE   H     HP  K  + G+    S V  A  VP   
Sbjct: 101 EAKDYTVEDYSLIM----SINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEA 156

Query: 151 ACGPHTHGSWKSLYLCLTFSWCRE----NGYGP 179
             G  T G+   L  CL F W ++    NG GP
Sbjct: 157 VYGA-TKGAMDQLTRCLAFEWAKDNIRVNGVGP 188


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,662,612
Number of Sequences: 62578
Number of extensions: 272761
Number of successful extensions: 606
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 3
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)