Query psy72
Match_columns 202
No_of_seqs 74 out of 76
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 20:42:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy72.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/72hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4111|consensus 100.0 4.6E-33 1E-37 224.7 3.6 98 13-121 35-134 (136)
2 PF04281 Tom22: Mitochondrial 99.9 4E-24 8.6E-29 171.6 -0.0 77 18-101 49-128 (137)
3 TIGR00986 3a0801s05tom22 mitoc 99.8 1.2E-21 2.6E-26 159.8 1.3 83 19-108 48-137 (145)
4 PF04281 Tom22: Mitochondrial 91.4 0.032 7E-07 45.5 -1.4 69 30-101 62-131 (137)
5 TIGR03729 acc_ester putative p 50.5 9.7 0.00021 31.2 1.6 15 147-162 210-224 (239)
6 PF03288 Pox_D5: Poxvirus D5 p 49.7 6.5 0.00014 27.6 0.4 11 169-179 32-42 (86)
7 PF09752 DUF2048: Uncharacteri 40.3 8 0.00017 36.0 -0.4 26 169-199 166-191 (348)
8 PF05381 Peptidase_C21: Tymovi 39.6 7.3 0.00016 31.1 -0.7 20 24-45 19-40 (104)
9 KOG1819|consensus 36.1 21 0.00045 36.4 1.6 16 89-104 817-832 (990)
10 PF13975 gag-asp_proteas: gag- 35.0 17 0.00036 25.4 0.6 35 11-50 26-60 (72)
11 PF11119 DUF2633: Protein of u 34.0 43 0.00093 24.6 2.6 24 65-88 8-31 (59)
12 PF06752 E_Pc_C: Enhancer of P 32.6 27 0.00059 31.4 1.6 15 87-101 18-32 (230)
13 PRK13892 conjugal transfer pro 30.0 29 0.00062 29.1 1.3 17 118-134 40-56 (134)
14 PF13664 DUF4149: Domain of un 28.1 50 0.0011 23.7 2.1 29 67-95 4-34 (101)
15 PTZ00481 Membrane attack compl 27.7 64 0.0014 32.1 3.3 40 89-130 354-394 (524)
16 PF10925 DUF2680: Protein of u 27.2 27 0.00058 24.9 0.6 9 171-179 51-59 (59)
17 TIGR03141 cytochro_ccmD heme e 26.1 98 0.0021 20.5 3.1 15 87-101 30-44 (45)
18 PF04995 CcmD: Heme exporter p 24.9 1.2E+02 0.0025 20.1 3.3 11 91-101 33-43 (46)
19 KOG3648|consensus 24.6 59 0.0013 34.2 2.6 27 79-107 62-88 (1179)
20 PF03746 LamB_YcsF: LamB/YcsF 22.1 34 0.00073 30.5 0.3 27 147-176 29-55 (242)
21 PRK05406 LamB/YcsF family prot 21.9 30 0.00066 30.9 0.0 27 147-176 31-57 (246)
22 PRK12569 hypothetical protein; 21.8 29 0.00064 31.0 -0.1 28 147-177 34-61 (245)
23 KOG4670|consensus 20.4 46 0.00099 33.5 0.9 32 67-102 368-401 (602)
No 1
>KOG4111|consensus
Probab=99.97 E-value=4.6e-33 Score=224.72 Aligned_cols=98 Identities=24% Similarity=0.332 Sum_probs=88.0
Q ss_pred ChhHHHHHhhhhhhcccccCCCcccccCchhhhccccceEE--eeeehhhhhcccceeehhhhhHHHhhhhhhhhhhhHh
Q psy72 13 STSSVMKNLKGSALWNGEQGRSSLDNSTPKESYSAAGEIFL--IKVPISFYSFARTSTWLIATSATVALLPIVFESQRFE 90 (202)
Q Consensus 13 ~~~~~~~~t~gERLWgLEMfPesLtEMFPe~VRSAAgatfs--v~vvKkLYsFSrsAlWI~~TSfmILvlPVIFEtER~Q 90 (202)
+.++--.||+-||+||| +||||+..|++++.+++ ++++||+|+|||+++||++|||||||+|||||+||+|
T Consensus 35 ~dd~e~dETi~eRi~gL-------kEivp~g~R~~i~~~~~~av~~~kk~~~fsg~a~Wi~tTt~lIL~vP~i~e~E~~q 107 (136)
T KOG4111|consen 35 GDDSEEDETILERIWGL-------KEIVPQGRRSAIGATAGDAVFVVKKLYSFSGKAAWIATTTFLILVVPLIFETEREQ 107 (136)
T ss_pred ccCCCcchhHHHHHHhh-------HhhcchhhhhhhhhcchhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455789999999999 78888888889887776 8999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCccchhhcccCCCCC
Q psy72 91 VQEMQRNQQKQWSTRPFSWLIFAFQGVNFEN 121 (202)
Q Consensus 91 MEE~Q~qQQRQiLLGP~aa~~~A~sG~~~~~ 121 (202)
|++.|.+||||+||||++ |++|+..+.
T Consensus 108 ~~~e~e~Qq~q~ll~p~~----~~q~~~~~a 134 (136)
T KOG4111|consen 108 QLQEQEKQQRQQLLAPNV----AAQGGKPGA 134 (136)
T ss_pred HHhHHHHHHHHHhCCCcc----cccCCCCCC
Confidence 999999999999999999 777765543
No 2
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=99.88 E-value=4e-24 Score=171.63 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=65.1
Q ss_pred HHHhhhhhhcccccCCCcccccCchhhhccccceEE--eeeehhhhhcccceeehhhhhHHHhhhhhhhhhhhHh-HHHH
Q psy72 18 MKNLKGSALWNGEQGRSSLDNSTPKESYSAAGEIFL--IKVPISFYSFARTSTWLIATSATVALLPIVFESQRFE-VQEM 94 (202)
Q Consensus 18 ~~~t~gERLWgLEMfPesLtEMFPe~VRSAAgatfs--v~vvKkLYsFSrsAlWI~~TSfmILvlPVIFEtER~Q-MEE~ 94 (202)
..||++|||||| ++|||+.+|+.++.+++ ++.+|++|+|+|+++||++||+|||++|++||.||+| +.||
T Consensus 49 ~dETl~ERl~aL-------kdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g~a~Wi~tTSallLgvPl~l~ie~EqQl~em 121 (137)
T PF04281_consen 49 EDETLLERLWAL-------KDIFPPSVRNWISSTVSTTSSAVKSLFSFSGKALWIVTTSALLLGVPLALEIEREQQLVEM 121 (137)
T ss_pred ccccHHHHHHHH-------hccCCHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999 77777777777776655 7999999999999999999999999999999999875 6666
Q ss_pred HHhhhhh
Q psy72 95 QRNQQKQ 101 (202)
Q Consensus 95 Q~qQQRQ 101 (202)
|++||.|
T Consensus 122 Ekeq~~q 128 (137)
T PF04281_consen 122 EKEQQMQ 128 (137)
T ss_pred HHHHHHH
Confidence 6544443
No 3
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=99.82 E-value=1.2e-21 Score=159.81 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=70.9
Q ss_pred HHhhhhhhcccccCCCcccccCchhhhccccceEE--eeeehhhhhcccceeehhhhhHHHhhhhhhhhhhhHh-HHHHH
Q psy72 19 KNLKGSALWNGEQGRSSLDNSTPKESYSAAGEIFL--IKVPISFYSFARTSTWLIATSATVALLPIVFESQRFE-VQEMQ 95 (202)
Q Consensus 19 ~~t~gERLWgLEMfPesLtEMFPe~VRSAAgatfs--v~vvKkLYsFSrsAlWI~~TSfmILvlPVIFEtER~Q-MEE~Q 95 (202)
.||+.||||+| ++|||+++|+.++++++ ++.+|++|+|+||++||++|||+||++|++++.+++| +.||+
T Consensus 48 ~ETl~ERi~AL-------kDm~Pp~~R~~i~~~~s~t~s~~ks~~sfsGkalWivsTSaLLLgVPlala~~~Eqql~emE 120 (145)
T TIGR00986 48 EETFTDRIYAL-------KDIVPPTTRGWIYHKYSTTTNFVKSTLSFAGRAAWAVSTSALLLGVPFAISFAEEQQLAEME 120 (145)
T ss_pred cCcHHHHHHHH-------HhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999 88888888888887766 7999999999999999999999999999999999996 66666
Q ss_pred H----hhhhhhhcCCCc
Q psy72 96 R----NQQKQWSTRPFS 108 (202)
Q Consensus 96 ~----qQQRQiLLGP~a 108 (202)
+ ||+-+=+|-|++
T Consensus 121 kE~~~q~~a~e~lapG~ 137 (145)
T TIGR00986 121 KEARMQELANDVLAAGG 137 (145)
T ss_pred HHHHHHHhhhhhcCCCC
Confidence 4 444455777776
No 4
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=91.37 E-value=0.032 Score=45.55 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=44.9
Q ss_pred ccCCCcccccCchhhhccccceEE-eeeehhhhhcccceeehhhhhHHHhhhhhhhhhhhHhHHHHHHhhhhh
Q psy72 30 EQGRSSLDNSTPKESYSAAGEIFL-IKVPISFYSFARTSTWLIATSATVALLPIVFESQRFEVQEMQRNQQKQ 101 (202)
Q Consensus 30 EMfPesLtEMFPe~VRSAAgatfs-v~vvKkLYsFSrsAlWI~~TSfmILvlPVIFEtER~QMEE~Q~qQQRQ 101 (202)
||||++.|+.+-..+.+++....+ .+...|+.|...+.+=|++ +-|.+-+--|.+..+||+.|++||++
T Consensus 62 di~P~~~R~~i~~~~~~~~~~~k~~~~~~g~a~Wi~tTSallLg---vPl~l~ie~EqQl~emEkeq~~qq~~ 131 (137)
T PF04281_consen 62 DIFPPSVRNWISSTVSTTSSAVKSLFSFSGKALWIVTTSALLLG---VPLALEIEREQQLVEMEKEQQMQQQA 131 (137)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 068999999877766655554444 3444555555555444443 45566666899999999988877764
No 5
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=50.46 E-value=9.7 Score=31.20 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=11.2
Q ss_pred CccccccCCCCCCcce
Q psy72 147 PANVACGPHTHGSWKS 162 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~ 162 (202)
|.-+.|| |+|.++..
T Consensus 210 v~~~i~G-H~H~~~~~ 224 (239)
T TIGR03729 210 IKDVIFG-HLHRRFGP 224 (239)
T ss_pred CCEEEEC-CccCCCCC
Confidence 5556777 99999853
No 6
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=49.69 E-value=6.5 Score=27.62 Aligned_cols=11 Identities=64% Similarity=1.552 Sum_probs=8.0
Q ss_pred ehhhhccCCCC
Q psy72 169 FSWCRENGYGP 179 (202)
Q Consensus 169 ~~~~~~~~~~~ 179 (202)
-.||++||+.|
T Consensus 32 ~~wc~~ng~~~ 42 (86)
T PF03288_consen 32 KEWCEENGYKP 42 (86)
T ss_dssp HHHHHHTT-S-
T ss_pred HHHHHHhCCCc
Confidence 47999999998
No 7
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=40.30 E-value=8 Score=36.03 Aligned_cols=26 Identities=46% Similarity=0.819 Sum_probs=20.4
Q ss_pred ehhhhccCCCCccceeeecCCCCCCCCcccC
Q psy72 169 FSWCRENGYGPLFPCILLGTGSSLGPGMAMM 199 (202)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (202)
.+||+++||||+- =||.|+|--||-|
T Consensus 166 l~Wl~~~G~~~~g-----~~G~SmGG~~A~l 191 (348)
T PF09752_consen 166 LHWLEREGYGPLG-----LTGISMGGHMAAL 191 (348)
T ss_pred HHHHHhcCCCceE-----EEEechhHhhHHh
Confidence 5899999999862 3688888777754
No 8
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=39.58 E-value=7.3 Score=31.13 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=14.7
Q ss_pred hhhccc--ccCCCcccccCchhhh
Q psy72 24 SALWNG--EQGRSSLDNSTPKESY 45 (202)
Q Consensus 24 ERLWgL--EMfPesLtEMFPe~VR 45 (202)
|+||.- ||+|||+=. ++.++
T Consensus 19 ~~LW~~L~~~lPDSlL~--n~ei~ 40 (104)
T PF05381_consen 19 ETLWATLCEILPDSLLD--NPEIR 40 (104)
T ss_pred HHHHHHHHHhCchhhcC--chhhh
Confidence 789998 999998763 34444
No 9
>KOG1819|consensus
Probab=36.06 E-value=21 Score=36.43 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=11.6
Q ss_pred HhHHHHHHhhhhhhhc
Q psy72 89 FEVQEMQRNQQKQWST 104 (202)
Q Consensus 89 ~QMEE~Q~qQQRQiLL 104 (202)
.|+|++|+|||-||-|
T Consensus 817 rqleqqqqqqqlqiql 832 (990)
T KOG1819|consen 817 RQLEQQQQQQQLQIQL 832 (990)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888777777765
No 10
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=34.96 E-value=17 Score=25.36 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=25.4
Q ss_pred CCChhHHHHHhhhhhhcccccCCCcccccCchhhhccccc
Q psy72 11 KGSTSSVMKNLKGSALWNGEQGRSSLDNSTPKESYSAAGE 50 (202)
Q Consensus 11 ~~~~~~~~~~t~gERLWgLEMfPesLtEMFPe~VRSAAga 50 (202)
-|++.+.|-+.+++|| |++..+... |.+++.|-|.
T Consensus 26 tGat~~fis~~~a~rL-gl~~~~~~~----~~~v~~a~g~ 60 (72)
T PF13975_consen 26 TGATHNFISESLAKRL-GLPLEKPPS----PIRVKLANGS 60 (72)
T ss_pred CCCcceecCHHHHHHh-CCCcccCCC----CEEEEECCCC
Confidence 4899999999999999 886555543 4455655553
No 11
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=33.96 E-value=43 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=19.4
Q ss_pred cceeehhhhhHHHhhhhhhhhhhh
Q psy72 65 RTSTWLIATSATVALLPIVFESQR 88 (202)
Q Consensus 65 rsAlWI~~TSfmILvlPVIFEtER 88 (202)
+-+-||..-||+|||.=++|..=-
T Consensus 8 ~mtriVLLISfiIlfgRl~Y~~I~ 31 (59)
T PF11119_consen 8 RMTRIVLLISFIILFGRLIYSAIG 31 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445699999999999988887543
No 12
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=32.57 E-value=27 Score=31.36 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=6.7
Q ss_pred hhHhHHHHHHhhhhh
Q psy72 87 QRFEVQEMQRNQQKQ 101 (202)
Q Consensus 87 ER~QMEE~Q~qQQRQ 101 (202)
.|-|++++|++||+|
T Consensus 18 QkQQLaqiqqqQ~~~ 32 (230)
T PF06752_consen 18 QKQQLAQIQQQQQQQ 32 (230)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334444444444444
No 13
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=29.99 E-value=29 Score=29.06 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=14.6
Q ss_pred CCCCCCCccchhhhhcc
Q psy72 118 NFENVEHHHPLKKILDT 134 (202)
Q Consensus 118 ~~~~~~h~~Pl~~~~~~ 134 (202)
+++++|---||.||+|.
T Consensus 40 ~G~glPWE~pL~~I~~S 56 (134)
T PRK13892 40 TGGSLPYESWLTNLRNS 56 (134)
T ss_pred CCCCCCchhHHHHHHHH
Confidence 37789999999999983
No 14
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=28.10 E-value=50 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=20.5
Q ss_pred eeehhhhhHH-Hhhhhhhhhh-hhHhHHHHH
Q psy72 67 STWLIATSAT-VALLPIVFES-QRFEVQEMQ 95 (202)
Q Consensus 67 AlWI~~TSfm-ILvlPVIFEt-ER~QMEE~Q 95 (202)
++|++++.+. ..+.|++|.. +|+|-.+.|
T Consensus 4 ~~w~G~~~~~~fvvap~lF~~L~~~~ag~i~ 34 (101)
T PF13664_consen 4 ALWLGSMVFFTFVVAPVLFKALPRQQAGKIQ 34 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5788888886 7889999985 444444333
No 15
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional
Probab=27.67 E-value=64 Score=32.07 Aligned_cols=40 Identities=23% Similarity=0.117 Sum_probs=26.0
Q ss_pred HhHHHHHHhhhhhh-hcCCCccchhhcccCCCCCCCCccchhh
Q psy72 89 FEVQEMQRNQQKQW-STRPFSWLIFAFQGVNFENVEHHHPLKK 130 (202)
Q Consensus 89 ~QMEE~Q~qQQRQi-LLGP~aa~~~A~sG~~~~~~~h~~Pl~~ 130 (202)
.+-.++|.++||++ -+||.+|- |+.|-+.....|..|+.-
T Consensus 354 ~~~~q~qv~eqRrie~~~P~ta~--Aiqgng~~~~~~~~p~~~ 394 (524)
T PTZ00481 354 QISYQQQVREQRRIERNGPRTAW--AIQGNGNCNGQLPLPLNY 394 (524)
T ss_pred HHHHHHHHHHHHHHHhcCCcceE--EEccCccccCcccCCcce
Confidence 34344455556665 58999965 777776667777777653
No 16
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=27.19 E-value=27 Score=24.87 Aligned_cols=9 Identities=33% Similarity=0.970 Sum_probs=4.5
Q ss_pred hhhccCCCC
Q psy72 171 WCRENGYGP 179 (202)
Q Consensus 171 ~~~~~~~~~ 179 (202)
-|.+|||+|
T Consensus 51 ~~~qnGf~p 59 (59)
T PF10925_consen 51 YMQQNGFVP 59 (59)
T ss_pred HHHHcCCCC
Confidence 345555554
No 17
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=26.07 E-value=98 Score=20.53 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=10.3
Q ss_pred hhHhHHHHHHhhhhh
Q psy72 87 QRFEVQEMQRNQQKQ 101 (202)
Q Consensus 87 ER~QMEE~Q~qQQRQ 101 (202)
.|.+..|++++|+|+
T Consensus 30 ~r~~~~~l~~~~~r~ 44 (45)
T TIGR03141 30 RRRLLRELRRLEARE 44 (45)
T ss_pred HHHHHHHHHHHHHcc
Confidence 344577787777776
No 18
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.91 E-value=1.2e+02 Score=20.13 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=6.0
Q ss_pred HHHHHHhhhhh
Q psy72 91 VQEMQRNQQKQ 101 (202)
Q Consensus 91 MEE~Q~qQQRQ 101 (202)
..+++++++|+
T Consensus 33 ~~~l~~~~~r~ 43 (46)
T PF04995_consen 33 RKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHhH
Confidence 55555555554
No 19
>KOG3648|consensus
Probab=24.62 E-value=59 Score=34.23 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=13.5
Q ss_pred hhhhhhhhhhHhHHHHHHhhhhhhhcCCC
Q psy72 79 LLPIVFESQRFEVQEMQRNQQKQWSTRPF 107 (202)
Q Consensus 79 vlPVIFEtER~QMEE~Q~qQQRQiLLGP~ 107 (202)
-+|-++...+ ++++|+|||+|+-+=|-
T Consensus 62 ~~~~~~~~~~--~~~~~~~~~~~~~~~P~ 88 (1179)
T KOG3648|consen 62 QLPQLLQSSQ--LQQQQQQQQQQQQLQPP 88 (1179)
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHhhCCC
Confidence 4566665544 44444444444444443
No 20
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=22.11 E-value=34 Score=30.47 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=15.2
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENG 176 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (202)
-+|+|||-|.- .=.+ .--|...|+++|
T Consensus 29 saNIACG~HAG-Dp~~--M~~tv~lA~~~g 55 (242)
T PF03746_consen 29 SANIACGFHAG-DPET--MRRTVRLAKEHG 55 (242)
T ss_dssp EEEEE-SSSS---HHH--HHHHHHHHHHTT
T ss_pred hHHHhhccccc-CHHH--HHHHHHHHHHcC
Confidence 48999999963 2222 223556677765
No 21
>PRK05406 LamB/YcsF family protein; Provisional
Probab=21.91 E-value=30 Score=30.91 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=15.9
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENG 176 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (202)
-||+|||-|.-. =. -.--|..-|.++|
T Consensus 31 sANIACG~HAGD-p~--~M~~tv~lA~~~g 57 (246)
T PRK05406 31 SANIACGFHAGD-PA--VMRRTVRLAKENG 57 (246)
T ss_pred hHHHhccccCCC-HH--HHHHHHHHHHHcC
Confidence 489999999632 11 1223455566664
No 22
>PRK12569 hypothetical protein; Provisional
Probab=21.84 E-value=29 Score=31.01 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=18.5
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccCC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENGY 177 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (202)
-||+|||-|.-.-. -.--|...|+++|-
T Consensus 34 saNIACG~HAGDp~---~M~~tv~lA~~~~V 61 (245)
T PRK12569 34 SANIATGFHAGDPN---IMRRTVELAKAHGV 61 (245)
T ss_pred hHHHhccccCCCHH---HHHHHHHHHHHcCC
Confidence 48999999974322 23346677787764
No 23
>KOG4670|consensus
Probab=20.38 E-value=46 Score=33.52 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=23.2
Q ss_pred eeehhhhhHHHhhhhhhhhhhhH--hHHHHHHhhhhhh
Q psy72 67 STWLIATSATVALLPIVFESQRF--EVQEMQRNQQKQW 102 (202)
Q Consensus 67 AlWI~~TSfmILvlPVIFEtER~--QMEE~Q~qQQRQi 102 (202)
.+||-.| ...|++=|.|.+ ||.++|.++|.||
T Consensus 368 R~win~t----iL~plvqeI~~vn~qfr~q~a~p~lqi 401 (602)
T KOG4670|consen 368 RLWINLT----ILDPLVQEIRTVNQQFRQQQAQPQLQI 401 (602)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHhcCcccee
Confidence 4698777 457888888887 4777777776664
Done!