Query psy72
Match_columns 202
No_of_seqs 74 out of 76
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 20:43:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy72.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/72hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dl8_E Protein-export membrane 51.1 2.7 9.4E-05 32.1 -0.4 52 54-108 41-94 (107)
2 2bp3_S Platelet glycoprotein I 38.1 7.3 0.00025 23.7 0.2 13 168-180 12-25 (26)
3 4a5u_A RNA replicase polyprote 29.0 12 0.00041 30.7 0.1 21 23-45 77-99 (160)
4 2dfa_A Hypothetical UPF0271 pr 25.4 17 0.00059 31.4 0.4 28 147-177 30-57 (250)
5 1v6t_A Hypothetical UPF0271 pr 25.0 18 0.0006 31.4 0.4 28 147-177 30-57 (255)
6 2x5e_A UPF0271 protein PA4511; 24.3 19 0.00064 31.3 0.4 28 147-177 36-63 (252)
7 1xw8_A UPF0271 protein YBGL; N 23.7 19 0.00066 31.1 0.4 28 147-177 25-52 (252)
8 4f4l_A ION transport protein; 22.6 23 0.00078 25.8 0.5 17 78-94 88-104 (112)
9 1go9_A Corticotropin releasing 21.2 62 0.0021 21.6 2.4 20 83-102 18-37 (42)
10 2rmf_A Urocortin, HUCN1; CRF l 20.7 65 0.0022 21.3 2.4 20 82-101 16-35 (40)
No 1
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=51.07 E-value=2.7 Score=32.09 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=22.7
Q ss_pred eeeehhhhhcccceeehhhhhHHHhhhhh--hhhhhhHhHHHHHHhhhhhhhcCCCc
Q psy72 54 IKVPISFYSFARTSTWLIATSATVALLPI--VFESQRFEVQEMQRNQQKQWSTRPFS 108 (202)
Q Consensus 54 v~vvKkLYsFSrsAlWI~~TSfmILvlPV--IFEtER~QMEE~Q~qQQRQiLLGP~a 108 (202)
+++.++.=+|-.+.+|+.+.-|+++.+-+ +....+.-+|+.+++||.. +|++
T Consensus 41 lfG~rg~~~~L~K~T~ilailF~v~sl~L~~l~~~~~sv~~~~~~~~~~~---~~~~ 94 (107)
T 3dl8_E 41 IFGVGGVETILTKATYWLGALFLVLALLLSVIPKEKGSVVEKSVQTEQSE---GKGT 94 (107)
T ss_dssp CCCSSCCCCCTTHHHHHHHHHHHHHHHHHHCC-------------------------
T ss_pred ccccchHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhcc---CCCc
Confidence 55567777788899999999998765544 4322222366655555443 7887
No 2
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=38.12 E-value=7.3 Score=23.74 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=10.1
Q ss_pred eehhhhccCC-CCc
Q psy72 168 TFSWCRENGY-GPL 180 (202)
Q Consensus 168 ~~~~~~~~~~-~~~ 180 (202)
.|-|.|.||| |||
T Consensus 12 lflwvr~ng~~gpl 25 (26)
T 2bp3_S 12 LFLWVRPNGRVXXX 25 (26)
T ss_pred EEEEEccCCeeccc
Confidence 4669999998 665
No 3
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=29.02 E-value=12 Score=30.73 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=15.7
Q ss_pred hhhhccc--ccCCCcccccCchhhh
Q psy72 23 GSALWNG--EQGRSSLDNSTPKESY 45 (202)
Q Consensus 23 gERLWgL--EMfPesLtEMFPe~VR 45 (202)
-|+||.- |++||+|=. ++.|+
T Consensus 77 ~~~LW~~Lc~~lPDSlL~--n~ei~ 99 (160)
T 4a5u_A 77 EEHLWESLQTILPDSQLS--NEETN 99 (160)
T ss_dssp HHHHHHHHTTTSCGGGTS--SHHHH
T ss_pred HHHHHHHHHHhCchhhcC--chhhh
Confidence 4899998 999998863 44444
No 4
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=25.43 E-value=17 Score=31.36 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=18.7
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccCC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENGY 177 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (202)
-||+|||-|-- .-. -.--|..+|+|+|-
T Consensus 30 SANIACGfHAG-Dp~--~M~~tv~lA~~~gV 57 (250)
T 2dfa_A 30 SANLACGFHGG-SPG--RILEAVRLAKAHGV 57 (250)
T ss_dssp EEEEECSSSSC-CHH--HHHHHHHHHHHTTC
T ss_pred hhhhhccccCC-CHH--HHHHHHHHHHHcCC
Confidence 48999999963 322 23346777888764
No 5
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=25.05 E-value=18 Score=31.41 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=18.7
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccCC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENGY 177 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (202)
-||+|||-|-- .-. -.--|..+|+|+|-
T Consensus 30 SANIACGfHAG-Dp~--~M~~tv~lA~~~gV 57 (255)
T 1v6t_A 30 SANVACGWHAG-DPL--VMRKTVRLAKENDV 57 (255)
T ss_dssp EEEEECSSSSC-CHH--HHHHHHHHHHHTTC
T ss_pred hhhhhccccCC-CHH--HHHHHHHHHHHcCC
Confidence 48999999963 322 23446777888764
No 6
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=24.29 E-value=19 Score=31.29 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=18.6
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccCC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENGY 177 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (202)
-||+|||-|-- .-. -.--|..+|+|+|-
T Consensus 36 SANIACGfHAG-Dp~--~M~~Tv~lA~~~gV 63 (252)
T 2x5e_A 36 QANLACGFHAG-DPL--TMRRAVELAVRHGV 63 (252)
T ss_dssp EEEEECSSSSC-CHH--HHHHHHHHHHHTTC
T ss_pred hhhhhccccCC-CHH--HHHHHHHHHHHcCC
Confidence 58999999963 322 23446677888764
No 7
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=23.73 E-value=19 Score=31.15 Aligned_cols=28 Identities=32% Similarity=0.480 Sum_probs=18.6
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccCC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENGY 177 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (202)
-||+|||-|- |.-. -.--|..+|+|+|-
T Consensus 25 SANIACGfHA-GDp~--~M~~Tv~lA~~~gV 52 (252)
T 1xw8_A 25 SANIACGFHA-GDAQ--IMQACVREAIKNGV 52 (252)
T ss_dssp EEEEECSSSS-CCHH--HHHHHHHHHHHHTC
T ss_pred hHHHhhcccC-CCHH--HHHHHHHHHHHcCC
Confidence 4899999986 3322 23346677888764
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=22.65 E-value=23 Score=25.76 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=4.8
Q ss_pred hhhhhhhhhhhHhHHHH
Q psy72 78 ALLPIVFESQRFEVQEM 94 (202)
Q Consensus 78 LvlPVIFEtER~QMEE~ 94 (202)
|++-||.|.=.++-+|.
T Consensus 88 LfiaVi~~~f~~~~~~~ 104 (112)
T 4f4l_A 88 LFIGIIVDAMAITKEQE 104 (112)
T ss_dssp HHTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788877544433333
No 9
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=21.15 E-value=62 Score=21.58 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=12.1
Q ss_pred hhhhhhHhHHHHHHhhhhhh
Q psy72 83 VFESQRFEVQEMQRNQQKQW 102 (202)
Q Consensus 83 IFEtER~QMEE~Q~qQQRQi 102 (202)
++|+.|.|-+.+|.++-|-+
T Consensus 18 mlemar~e~~~qqA~~NR~l 37 (42)
T 1go9_A 18 VLEMARAEQLAQQAHSNRKL 37 (42)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 56777776555555555543
No 10
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=20.74 E-value=65 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=11.4
Q ss_pred hhhhhhhHhHHHHHHhhhhh
Q psy72 82 IVFESQRFEVQEMQRNQQKQ 101 (202)
Q Consensus 82 VIFEtER~QMEE~Q~qQQRQ 101 (202)
=++|+.|.|-+.+|.++-|-
T Consensus 16 ~miemar~e~~~qqA~~NR~ 35 (40)
T 2rmf_A 16 TLLELARTQSQRERAEQNRI 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 35666776655555555444
Done!