Query psy72
Match_columns 202
No_of_seqs 74 out of 76
Neff 2.3
Searched_HMMs 13730
Date Fri Aug 16 20:43:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy72.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/72hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dfaa1 c.6.2.5 (A:1-250) Hypo 27.0 7.3 0.00053 31.2 0.4 27 147-176 30-56 (250)
2 d1v6ta_ c.6.2.5 (A:) Hypotheti 25.6 8 0.00058 31.0 0.4 27 147-176 30-56 (254)
3 d1xw8a_ c.6.2.5 (A:) Hypotheti 25.1 8.3 0.0006 30.8 0.4 10 147-156 25-34 (247)
4 d1jm1a_ b.33.1.1 (A:) Rieske p 12.3 50 0.0036 25.1 2.2 36 113-153 164-200 (202)
5 d2fyxa1 d.58.57.1 (A:1-130) Pu 10.1 21 0.0015 25.0 -0.7 14 7-20 75-88 (130)
6 d1lr7a1 g.3.11.3 (A:64-88) Dom 10.0 35 0.0025 19.3 0.4 8 148-155 4-11 (26)
7 d2g17a2 d.81.1.1 (A:154-308) N 9.9 82 0.006 22.6 2.6 12 72-83 3-14 (155)
8 d1i2ta_ a.144.1.1 (A:) hyperpl 9.9 24 0.0018 22.9 -0.4 11 19-29 2-12 (61)
9 d1vkna2 d.81.1.1 (A:145-307) N 9.7 45 0.0033 24.1 1.0 34 72-121 3-36 (163)
10 d2ihoa2 d.3.1.18 (A:156-293) A 9.6 38 0.0027 25.4 0.5 22 147-168 9-35 (138)
No 1
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]}
Probab=27.02 E-value=7.3 Score=31.16 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=15.7
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENG 176 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (202)
-||+|||-|. |.=.+ .--|..-|+++|
T Consensus 30 saNIACG~Ha-GD~~~--m~~tv~lA~~~~ 56 (250)
T d2dfaa1 30 SANLACGFHG-GSPGR--ILEAVRLAKAHG 56 (250)
T ss_dssp EEEEECSSSS-CCHHH--HHHHHHHHHHTT
T ss_pred hHHHhcCccc-CCHHH--HHHHHHHHHHcC
Confidence 4899999996 32222 123445556554
No 2
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.61 E-value=8 Score=31.03 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=16.3
Q ss_pred CccccccCCCCCCcceeeeeeeehhhhccC
Q psy72 147 PANVACGPHTHGSWKSLYLCLTFSWCRENG 176 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (202)
-||+|||-|.- .=.+ .--|..-|++||
T Consensus 30 saNIACG~HAG-D~~~--m~~tv~lA~~~~ 56 (254)
T d1v6ta_ 30 SANVACGWHAG-DPLV--MRKTVRLAKEND 56 (254)
T ss_dssp EEEEECSSSSC-CHHH--HHHHHHHHHHTT
T ss_pred hHHHhcCcccC-CHHH--HHHHHHHHHHcC
Confidence 58999999963 3222 223445566665
No 3
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]}
Probab=25.06 E-value=8.3 Score=30.81 Aligned_cols=10 Identities=60% Similarity=1.099 Sum_probs=8.8
Q ss_pred CccccccCCC
Q psy72 147 PANVACGPHT 156 (202)
Q Consensus 147 ~~~~~~~~~~ 156 (202)
-||+|||-|.
T Consensus 25 saNIACG~Ha 34 (247)
T d1xw8a_ 25 SANIACGFHA 34 (247)
T ss_dssp EEEEECSSSS
T ss_pred hHHHhccccc
Confidence 4899999996
No 4
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=12.29 E-value=50 Score=25.12 Aligned_cols=36 Identities=28% Similarity=0.621 Sum_probs=26.8
Q ss_pred hcccCCCC-CCCCccchhhhhccCCCCceeeeeecCcccccc
Q psy72 113 AFQGVNFE-NVEHHHPLKKILDTGHYSPVYVAHKVPANVACG 153 (202)
Q Consensus 113 A~sG~~~~-~~~h~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (202)
++-|..++ +++---|=+.++ |.|.| .|.||.|-+|.
T Consensus 164 G~~~p~~~~~~~~~~p~~~~~----~~~~~-~~~~~~~~~~~ 200 (202)
T d1jm1a_ 164 GTNAPYFSAGIPRTTPQDNLL----YDPRY-SYSVPNNPSCS 200 (202)
T ss_dssp EESSCCCCSSSCCCSGGGGGS----CCTTC-CCCCCCSSCCE
T ss_pred EccCCccCCCcCCcCcccccc----cCCcc-cccCCCCCccc
Confidence 44455555 777888877766 45888 89999999994
No 5
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=10.06 E-value=21 Score=24.95 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=7.6
Q ss_pred EeccCCChhHHHHH
Q psy72 7 IRNLKGSTSSVMKN 20 (202)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (202)
++.|||.||..|.+
T Consensus 75 v~~lKg~Ssr~i~~ 88 (130)
T d2fyxa1 75 VKALKGASARRMFS 88 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhcchhHHHHHH
Confidence 34556666555543
No 6
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.97 E-value=35 Score=19.28 Aligned_cols=8 Identities=63% Similarity=1.298 Sum_probs=6.4
Q ss_pred ccccccCC
Q psy72 148 ANVACGPH 155 (202)
Q Consensus 148 ~~~~~~~~ 155 (202)
.||.|||-
T Consensus 4 dnvdcgpg 11 (26)
T d1lr7a1 4 ENVDCGPG 11 (26)
T ss_dssp TTCCCCTT
T ss_pred cccccCCC
Confidence 58999984
No 7
>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Probab=9.93 E-value=82 Score=22.61 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.8
Q ss_pred hhhHHHhhhhhh
Q psy72 72 ATSATVALLPIV 83 (202)
Q Consensus 72 ~TSfmILvlPVI 83 (202)
.|++++..+|++
T Consensus 3 aTa~~l~L~PL~ 14 (155)
T d2g17a2 3 PTAAQLSLKPLI 14 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578888888986
No 8
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.85 E-value=24 Score=22.87 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=9.2
Q ss_pred HHhhhhhhccc
Q psy72 19 KNLKGSALWNG 29 (202)
Q Consensus 19 ~~t~gERLWgL 29 (202)
|+.+||||..+
T Consensus 2 k~~LGE~Ly~~ 12 (61)
T d1i2ta_ 2 RQALGERLYPR 12 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHhHHH
Confidence 67789999887
No 9
>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
Probab=9.66 E-value=45 Score=24.12 Aligned_cols=34 Identities=29% Similarity=0.231 Sum_probs=21.9
Q ss_pred hhhHHHhhhhhhhhhhhHhHHHHHHhhhhhhhcCCCccchhhcccCCCCC
Q psy72 72 ATSATVALLPIVFESQRFEVQEMQRNQQKQWSTRPFSWLIFAFQGVNFEN 121 (202)
Q Consensus 72 ~TSfmILvlPVIFEtER~QMEE~Q~qQQRQiLLGP~aa~~~A~sG~~~~~ 121 (202)
.|+++..++|++= +-|+-++.+-+-|.||.+|+|
T Consensus 3 aT~~~l~l~PLv~----------------~gli~~~~i~i~a~SG~SGaG 36 (163)
T d1vkna2 3 PTSVILALAPALK----------------HNLVDPETILVDAKSGVSGAG 36 (163)
T ss_dssp HHHHHHHHHHHHH----------------TTCSCCSEEEEEEEEEGGGGC
T ss_pred hHHHHHHHHHHHH----------------cCCCCCCceEEEeeccccccc
Confidence 5788888889862 335556655555677765554
No 10
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=9.58 E-value=38 Score=25.43 Aligned_cols=22 Identities=41% Similarity=0.803 Sum_probs=17.6
Q ss_pred CccccccCCCCCCcce-----eeeeee
Q psy72 147 PANVACGPHTHGSWKS-----LYLCLT 168 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~-----~~~~~~ 168 (202)
-+-.+|+||.|+..|+ +||.|+
T Consensus 9 ~a~Llrnp~~~qdf~~Y~~DgeYLVLp 35 (138)
T d2ihoa2 9 QAAIARNPHIHGTYRGYILDGEYLVLP 35 (138)
T ss_dssp HHHHHTCTTCCSEEECSSTTCEEECCC
T ss_pred HHHHHhCCcccccceeeeccceEEEec
Confidence 3457899999999886 688775
Done!