RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy72
         (202 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.015
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 87/198 (43%)

Query: 36  LDN--STPKESYSAAGEIFLIKVPISF----------YS--------------------- 62
           L+N  +TP + Y       L+ +PIS           Y                      
Sbjct: 219 LENPSNTPDKDY-------LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271

Query: 63  -----------FARTSTW----LIATSATVALLPIVFESQRF---------EVQEMQRNQ 98
                       A T +W    +    A   L  I                 +++   N 
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331

Query: 99  QKQWSTRPFSWLIFAFQGVNFENVEHHHPLKKILDTGHYSP----VYVA-HKVPAN-VAC 152
           +   S  P    + +   +  E V+       +  T  + P    V ++      N V  
Sbjct: 332 EGVPS--P----MLSISNLTQEQVQ-----DYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380

Query: 153 GPHTHGSWKSLY-LCLTF 169
           GP      +SLY L LT 
Sbjct: 381 GPP-----QSLYGLNLTL 393


>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
           and 4 calmodulin...; transferase, calcium dependent
           protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
           PDB: 3hzt_A* 3dxn_A 3l19_A*
          Length = 494

 Score = 28.1 bits (63), Expect = 2.2
 Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 1/55 (1%)

Query: 92  QEMQRNQQKQWSTRPFSWLIFAFQGVNFENVEHHHPLKKILDTGHYSPVYVA-HK 145
                 ++  +           F      ++   +   K L +G Y  V +   K
Sbjct: 5   HHHSSGRENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDK 59


>1j1h_A Small protein B; SMPB, SSRA associated protein, OB fold, riken
          structural genomics/proteomics initiative, RSGI,
          structural genomics; NMR {Thermus thermophilus} SCOP:
          b.111.1.1 PDB: 4abr_2* 3iyq_B 3iyr_B
          Length = 144

 Score = 27.5 bits (62), Expect = 2.2
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 7/36 (19%)

Query: 31 QGRSSLDNSTPKESYSAA--GEIFLIKVPISFYSFA 64
           G+          S++    GE++L  + I+ Y   
Sbjct: 36 AGKVDF-----TGSFARFEDGELYLENLYIAPYEKG 66


>1wjx_A Small protein B, SSRA-binding protein; RNA binding protein,
          structural genomics, riken structural
          genomics/proteomics initiative, RSGI; 1.70A {Thermus
          thermophilus} SCOP: b.111.1.1 PDB: 3iz4_B 2czj_A*
          Length = 122

 Score = 26.7 bits (60), Expect = 2.6
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 7/36 (19%)

Query: 31 QGRSSLDNSTPKESYSA--AGEIFLIKVPISFYSFA 64
           G+          S++    GE++L  + I+ Y   
Sbjct: 35 AGKVDF-----TGSFARFEDGELYLENLYIAPYEKG 65


>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
           calmodulin like EF...; calcium dependent protein kinase;
           HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
           PDB: 2qg5_A*
          Length = 277

 Score = 27.6 bits (62), Expect = 2.8
 Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 116 GVNFENVEHHHPLKKILDTGHYSPVYVA-HK 145
           G    ++  ++ L+  +  G +  V +A  K
Sbjct: 1   GSTKGDINQYYTLENTIGRGSWGEVKIAVQK 31


>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA
          complex, RNA binding protein/RNA complex; 3.20A
          {Aquifex aeolicus} SCOP: b.111.1.1 PDB: 2ob7_B 1k8h_A
          1zc8_K
          Length = 156

 Score = 26.7 bits (60), Expect = 4.2
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 7/37 (18%)

Query: 30 EQGRSSLDNSTPKESYSAA--GEIFLIKVPISFYSFA 64
          E+G  S      K+S+     GE +L  + I+ Y  A
Sbjct: 41 EKGTVSF-----KDSFVRIENGEAWLYNLYIAPYKHA 72


>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase,
           photosynthetic P sulfur bacterium, iron-sulfur cluster,
           NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
          Length = 269

 Score = 26.1 bits (57), Expect = 7.6
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 149 NVAC-GPHTHGSWKSLYLCLTFSWCRENGYGPLFPCI 184
            + C GP T+ +  ++      SW  E G+    PC+
Sbjct: 216 RLGCKGPTTYNACATMKWNDGTSWPVEAGH----PCL 248


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,064,078
Number of extensions: 163148
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 10
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)