RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy72
         (202 letters)



>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum
           pernix [TaxId: 56636]}
          Length = 150

 Score = 25.4 bits (55), Expect = 3.4
 Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 115 QGVNFENVEHHHPLKKILDTGHYSPVYVAHKVPANVACGPHTHGSWKSLYLCLTFSWCRE 174
           +G+ +  +    P + + +      V  +  V   +            +Y  +     R 
Sbjct: 10  RGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNA-----GGVYAVVIPGDKRL 64

Query: 175 N 175
           N
Sbjct: 65  N 65


>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
           thermophilus [TaxId: 274]}
          Length = 250

 Score = 24.9 bits (54), Expect = 7.0
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 148 ANVACGPHTHGSWKSLYLCLTFSWCRENG 176
           AN+ACG H  GS   +         + +G
Sbjct: 31  ANLACGFHG-GSPGRIL--EAVRLAKAHG 56


>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 160

 Score = 24.6 bits (53), Expect = 7.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 182 PCILLGTGSSLGPGMAMMPSR 202
           P I++G G+ + P M  +  R
Sbjct: 9   PVIMVGPGTGIAPFMGFIQER 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,517
Number of extensions: 32762
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 5
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)