BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7201
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBH5|LMAN2_MOUSE Vesicular integral-membrane protein VIP36 OS=Mus musculus GN=Lman2
PE=2 SV=2
Length = 358
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 39/49 (79%)
Query: 2 TDFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
TD E+K WK C ++GV+LPTGYYFG SA TGDLSDNHD++ I+ ++L
Sbjct: 230 TDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISIKLFQL 278
>sp|P49256|LMAN2_CANFA Vesicular integral-membrane protein VIP36 OS=Canis familiaris
GN=LMAN2 PE=1 SV=1
Length = 356
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 2 TDFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
TD E+K WK C ++GV+LPTGYYFG SA TGDLSDNHD++ ++ ++L
Sbjct: 228 TDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQL 276
>sp|Q12907|LMAN2_HUMAN Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2
PE=1 SV=1
Length = 356
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 2 TDFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
TD E+K WK C ++GV+LPTGYYFG SA TGDLSDNHD++ ++ ++L
Sbjct: 228 TDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQL 276
>sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1
Length = 348
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 3 DFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
D + K W++C +V GV+LP GYYFG S+ TGDLSDNHDV+ ++ +EL
Sbjct: 227 DIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFEL 274
>sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1
Length = 348
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 3 DFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
D + K W++C +V GV+LP GYYFG S+ TGDLSDNHDV+ ++ +EL
Sbjct: 227 DIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFEL 274
>sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1
Length = 348
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 3 DFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
D + K W++C +V GV+LP GYYFG S+ TGDLSDNHDV+ ++ +EL
Sbjct: 227 DIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFEL 274
>sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=2 SV=1
Length = 347
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 3 DFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
D + K W++C ++ GV+LP GYYFG S+ TGDLSDNHDV+ ++ +EL
Sbjct: 226 DIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFEL 273
>sp|Q62902|LMAN1_RAT Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1
Length = 517
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 6 NKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEK 56
+K ++ C KV + +PT +FG+SAATG L+D+HDVL T++L PG++
Sbjct: 231 DKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGKE 281
>sp|Q9D0F3|LMAN1_MOUSE Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=2 SV=1
Length = 517
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 6 NKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEK 56
+K ++ C KV + +PT +FG+SAATG L+D+HDVL T++L PG++
Sbjct: 231 DKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGKE 281
>sp|Q9TU32|LMAN1_CHLAE Protein ERGIC-53 OS=Chlorocebus aethiops GN=LMAN1 PE=2 SV=1
Length = 510
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 6 NKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEK 56
+K ++ C KV + +P +FGVSAATG L+D+HDVL T++L PG++
Sbjct: 223 DKNDYEFCAKVENMIIPAQGHFGVSAATGGLADDHDVLSFLTFQLTEPGKE 273
>sp|P49257|LMAN1_HUMAN Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2
Length = 510
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 6 NKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEK 56
+K ++ C KV + +P +FG+SAATG L+D+HDVL T++L PG++
Sbjct: 223 DKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKE 273
>sp|Q9HAT1|LMA1L_HUMAN Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2
Length = 526
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 13 CFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEKLSKGPFINL 65
C V + L G +FGVSAATG L+D+HDVL T+ L P ++ PF+ +
Sbjct: 215 CVDVGPLLLVPGGFFGVSAATGTLADDHDVLSFLTFSLSEPSPEVPPQPFLEM 267
>sp|Q5FB95|LMA1L_RAT Protein ERGIC-53-like OS=Rattus norvegicus GN=Lman1l PE=1 SV=1
Length = 503
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 13 CFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEKLSKGPF 62
C V + L G +FGVSAAT L+D+HDVL T+ L PG + + PF
Sbjct: 216 CVDVEPLLLAPGGFFGVSAATSTLADDHDVLSFLTFSLRDPGSEEALQPF 265
>sp|Q8VCD3|LMA1L_MOUSE Protein ERGIC-53-like OS=Mus musculus GN=Lman1l PE=2 SV=2
Length = 505
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 13 CFKVSGVKLPTGYYFGVSAATGDLS-DNHDVLGIRTYELEFPGEKLSKGPFI 63
C V + L G +FGVSAATG L+ D+HDVL T+ L PG + + PF+
Sbjct: 216 CVDVEPLFLAPGGFFGVSAATGTLAADDHDVLSFLTFSLREPGPEETPQPFM 267
>sp|O94401|YQF8_SCHPO L-type lectin-like domain-containing protein C126.08c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC126.08c PE=4 SV=1
Length = 312
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 4 FENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL---------EFPG 54
++ +++ +CF ++ V+LP + SA TGDLS++H++ I + + E P
Sbjct: 202 YQGSSSFIKCFDLNEVELPLTTFMSFSAHTGDLSESHEIASILSRTITDIDDEGTPEIPA 261
Query: 55 EKL 57
E+L
Sbjct: 262 EEL 264
>sp|O42707|YOC5_SCHPO L-type lectin-like domain-containing protein C4F6.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC4F6.05c PE=2 SV=2
Length = 384
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 11 KECFKVSGVKLPTGYYFGVSAATGDLSD 38
K CF+V V LP GYYFGVS+ + D
Sbjct: 188 KPCFQVKDVILPQGYYFGVSSQSTSAKD 215
>sp|Q46866|YGIV_ECOLI Probable transcriptional regulator YgiV OS=Escherichia coli (strain
K12) GN=ygiV PE=4 SV=2
Length = 160
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 23 TGYYFGVSAATGDLSD-NHDVLGIRTYELEFPGEKLSKGPFI 63
TG + V+ G+L D +H V GI + L GEK+ K P +
Sbjct: 95 TGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPIL 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,739,332
Number of Sequences: 539616
Number of extensions: 940946
Number of successful extensions: 1188
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 17
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)