RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7201
(65 letters)
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus
norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A
Length = 260
Score = 70.3 bits (171), Expect = 8e-17
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 5 ENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEK 56
+K ++ C KV + +PT +FG+SAATG L+D+HDVL T++L PG++
Sbjct: 206 PDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGKE 257
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.52A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A
2a6x_A
Length = 226
Score = 67.6 bits (165), Expect = 5e-16
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 4 FENKAAWKECFKVSGVKLP--TGYYFGVSAATGDLSDNHDVLGIRTYEL 50
+ + + CF+ VK + + G SA ++ ++L ++ Y+
Sbjct: 172 LKLQMDNRVCFQTRKVKFMGSSPFRIGTSAINDASKESFEILKMKLYDG 220
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.00A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A
2a71_A
Length = 222
Score = 65.0 bits (158), Expect = 4e-15
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 4 FENKAAWKECFKVSGVKLPTG-YYFGVSAATGDLSDNHDVLGIRTYEL 50
+ + K CF+ V+ P+G Y GV+A G +++N + I +
Sbjct: 171 LKVQVDNKVCFQTRKVRFPSGSYRIGVTAQNGAVNNNAESFEIFKMQF 218
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.42A
{Saccharomyces cerevisiae} SCOP: b.29.1.13
Length = 256
Score = 65.4 bits (159), Expect = 4e-15
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 4 FENKAAWKECFKVSGVKLPTG-YYFGVSAATGDLSDNHDVLGIRTYEL 50
+ + K CF+ V+ P+G Y GV+A G +++N + I +
Sbjct: 178 LKVQVDNKVCFQTRKVRFPSGSYRIGVTAQNGAVNNNAESFEIFKMQF 225
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich,
carbohydrate binding protein, cargo receptor, transport;
HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A
2duq_A* 2duo_A* 2e6v_A*
Length = 253
Score = 58.8 bits (141), Expect = 1e-12
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 1 STDFENKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYELEFP 53
TD E+K WK C ++GV+LPTGYYFG SA TGDLSDNHD++ ++ ++L
Sbjct: 179 MTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMVE 231
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich,
protein-carbohydrate complex, sugar binding protein;
HET: MAN; 1.90A {Bowringia mildbraedii}
Length = 240
Score = 31.0 bits (69), Expect = 0.013
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLG 44
P G SA TG + +++L
Sbjct: 204 BPBWVRVGFSATTGQYTQTNNILA 227
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor,
sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP:
b.29.1.1
Length = 133
Score = 30.8 bits (69), Expect = 0.013
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLG 44
LP G+SA+TG + + V
Sbjct: 84 LPEWVRVGLSASTGQDKERNTVHS 107
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL;
1.65A {Platypodium elegans} PDB: 3zvx_A* 1ukg_A* 1q8o_A*
1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A*
2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A
2phf_A* 2phr_A* 2pht_A* ...
Length = 261
Score = 30.9 bits (69), Expect = 0.014
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLG 44
LP G SAA+G+ H++
Sbjct: 216 LPEWVRVGFSAASGEQFQTHNLES 239
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding
protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1
Length = 234
Score = 30.9 bits (69), Expect = 0.016
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 22 PTGYYFGVSAATGDLSDNHDVLG 44
P G SA TG H+VL
Sbjct: 204 PEWVRIGFSATTGAEYAAHEVLS 226
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB:
1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B*
1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B*
1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B
Length = 52
Score = 28.3 bits (63), Expect = 0.036
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLG 44
+P G SA TG H+VL
Sbjct: 16 VPEWVRIGFSATTGAEYAAHEVLS 39
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.9 bits (63), Expect = 0.16
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 14 FKVSGVKLPTGYYFGVSAATGDLSDNHD--VLGIRTY---ELEFPGEKLS 58
+GV + G A+ +L H ++ Y +++ PG L
Sbjct: 182 LADAGVIYHPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSGLG 231
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO
(hydrolase-inhibitor), complex (hydrolase-inhibitor)
comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP:
b.29.1.1 PDB: 1viw_B*
Length = 223
Score = 27.8 bits (61), Expect = 0.19
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
+ G SA +G + HDVL
Sbjct: 171 VYDWVSVGFSATSGAYQWSYETHDVLS 197
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG;
2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB:
1gnz_A*
Length = 257
Score = 27.1 bits (59), Expect = 0.30
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 21 LPTGYYFGVSAATGDL-SDNHDVLG 44
LP G+SA+TG+ +L
Sbjct: 208 LPESVRVGISASTGNNQFLTVYILS 232
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis}
SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A
1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A
1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ...
Length = 237
Score = 26.8 bits (58), Expect = 0.41
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLG 44
LP G+SA+TG + + +L
Sbjct: 85 LPEWVRVGLSASTGLYKETNTILS 108
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC
GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP:
b.29.1.1 PDB: 1lec_A* 1led_A*
Length = 243
Score = 26.7 bits (58), Expect = 0.51
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLG 44
LP G SA G + +L
Sbjct: 209 LPQKVRIGFSAGVG-YDEVTYILS 231
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins,
lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP:
b.29.1.1
Length = 240
Score = 26.3 bits (57), Expect = 0.59
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
+ G S +G D HDVL
Sbjct: 194 VDEWVSVGFSPTSGLTEDTTETHDVLS 220
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary
association, orthorhombic, carbohydrate specificity,
protein crystallography; HET: GAL GLC; 2.15A {Arachis
hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A*
1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A*
1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A*
2dvd_A* 2dvf_A 2dvg_A* ...
Length = 232
Score = 26.2 bits (57), Expect = 0.60
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 21 LPTGYYFGVSAATGDLS-DNHDVLG 44
LP FG SA+ H +
Sbjct: 198 LPERVKFGFSASGSLGGRQIHLIRS 222
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG;
2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A*
1qoo_A* 1qos_A* 1qot_A*
Length = 242
Score = 25.9 bits (56), Expect = 0.74
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 21 LPTGYYFGVSAATGDLSD--NHDVLG 44
LP G S G+ ++ HDVL
Sbjct: 206 LPEWVSVGFSGGVGNAAEFETHDVLS 231
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin;
HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB:
1g8w_A*
Length = 252
Score = 25.9 bits (56), Expect = 1.0
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
LP G SA TG N +DVL
Sbjct: 199 LPEWVSVGFSATTGINKGNVETNDVLS 225
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly
roll, sugar binding protein; 1.81A {Robinia
pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A*
Length = 237
Score = 25.5 bits (55), Expect = 1.4
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATG---DLSDNHDVLG 44
LP FG SA TG +DVL
Sbjct: 202 LPEWVRFGFSATTGIDKGYVQTNDVLS 228
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET:
NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP:
b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A*
Length = 253
Score = 25.1 bits (54), Expect = 1.5
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATG---DLSDNHDVLG 44
LP G SA TG ++ HDVL
Sbjct: 200 LPEYVSIGFSATTGLSEGYTETHDVLS 226
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein,
saccharide, protein-carbohydrate interactions, lactose,
glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli}
SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A*
1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A
1uzy_A* 3n35_A* 3n36_A* 3n3h_A*
Length = 239
Score = 25.1 bits (54), Expect = 1.5
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATG---DLSDNHDVLG 44
LP G+S ATG D ++ HDV
Sbjct: 204 LPDWVDVGLSGATGAQRDAAETHDVYS 230
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose
specific lectin, SUG binding protein; HET: NAG FUC BMA
MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A*
Length = 242
Score = 25.1 bits (54), Expect = 1.6
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 21 LPTGYYFGVSAATG-DLSDNHDVLG 44
LP G S +T H+VL
Sbjct: 206 LPEWVSVGFSGSTYIGRQATHEVLN 230
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein
TN-bindin protein, carbohydrate recognition, sugar
binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa}
SCOP: b.29.1.1
Length = 233
Score = 25.1 bits (54), Expect = 1.8
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATG---DLSDNHDVLG 44
LP G SA TG + + HD++
Sbjct: 199 LPEYVRVGFSATTGLNAGVVETHDIVS 225
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin,
legume lectin fungal, sugar binding protein; 2.04A
{Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A*
Length = 251
Score = 24.7 bits (53), Expect = 2.6
Identities = 11/27 (40%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
LP G SAATG HDV
Sbjct: 204 LPEWVRVGFSAATGASGGKIETHDVFS 230
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal
activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris}
SCOP: b.29.1.1
Length = 226
Score = 24.3 bits (52), Expect = 2.8
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
+ G SA +G + H+VL
Sbjct: 192 VEDWVSVGFSATSGSKKETTETHNVLS 218
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP:
b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A*
Length = 253
Score = 24.4 bits (52), Expect = 3.1
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 21 LPTGYYFGVSAATGDLSDN--HDVLG 44
LP G SAATG HDVL
Sbjct: 200 LPEWVRIGFSAATGLDIPGESHDVLS 225
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding,
sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC;
2.75A {Maackia amurensis} SCOP: b.29.1.1
Length = 239
Score = 24.3 bits (52), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 21 LPTGYYFGVSAATGDLSD--NHDVLG 44
LP G SAATG ++ HDVL
Sbjct: 207 LPEWVRVGFSAATGYPTEVETHDVLS 232
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein
crystallography, group specificity, saccharide free
form; HET: NAG; 2.30A {Psophocarpus tetragonolobus}
SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A*
2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A*
2e7t_A* 2e7q_A*
Length = 242
Score = 23.6 bits (50), Expect = 6.9
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 21 LPTGYYFGVSAATGDLSDN-------HDVLG 44
LP G SAATGD S HD+L
Sbjct: 199 LPESVNVGFSAATGDPSGKQRNATETHDILS 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.420
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,018,350
Number of extensions: 45856
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 29
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.0 bits)