RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7201
(65 letters)
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 218
Score = 65.8 bits (160), Expect = 8e-16
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 1 STDFENKAAWKECFKVSGVKLPTG--YYFGVSAATGDLSDNHDVLGIRTYEL 50
+ + + + CF+ VK + G SA ++ ++L ++ Y+
Sbjct: 164 NHLLKLQMDNRVCFQTRKVKFMGSSPFRIGTSAINDASKESFEILKMKLYDG 215
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 221
Score = 62.3 bits (151), Expect = 1e-14
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 4 FENKAAWKECFKVSGVKLPTG-YYFGVSAATGDLSDNHDVLGIRTYEL 50
+ + K CF+ V+ P+G Y GV+A G +++N + I +
Sbjct: 170 LKVQVDNKVCFQTRKVRFPSGSYRIGVTAQNGAVNNNAESFEIFKMQF 217
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of
P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 228
Score = 59.4 bits (143), Expect = 2e-13
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 6 NKAAWKECFKVSGVKLPTGYYFGVSAATGDLSDNHDVLGIRTYEL 50
+K ++ C KV + +PT +FG+SAATG L+D+HDVL T++L
Sbjct: 182 DKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQL 226
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus
angolensis) [TaxId: 182271]}
Length = 241
Score = 41.3 bits (96), Expect = 1e-06
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 STDFENKAAWKECFKVSGVK-LPTGYYFGVSAATGDLSDNHDVLG 44
+ + ++ ++V LP G SAA+G+ H +
Sbjct: 186 VATYSDGTRYEVSYEVDVRSVLPEWVRVGFSAASGEQYQTHTLES 230
>g1qmo.1 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolichos
lablab), Fril [TaxId: 35936]}
Length = 230
Score = 40.1 bits (93), Expect = 2e-06
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 1 STDFENKAAWKECFKVSGVK-LPTGYYFGVSAATGDLSDNHDVLG 44
++ + + + LP G+SA+TG + + V
Sbjct: 176 TSYYAGSKPATLSYDIELHTVLPEWVRVGLSASTGQDKERNTVHS 220
>g2ltn.1 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum sativum)
[TaxId: 3888]}
Length = 229
Score = 39.4 bits (91), Expect = 4e-06
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 STDFENKAAWKECFKVSGVK-LPTGYYFGVSAATGDLSDNHDVLG 44
S + N ++ VS +P G SA TG H+VL
Sbjct: 176 SLTYPNVTSYTLSDVVSLKDVVPEWVRIGFSATTGAEYAAHEVLS 220
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 204
Score = 36.6 bits (84), Expect = 5e-05
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
+ G SA +G + HDVL
Sbjct: 171 VYDWVSVGFSATSGAYQWSYETHDVLS 197
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 233
Score = 35.1 bits (80), Expect = 2e-04
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
LP G SA TG N +DVL
Sbjct: 199 LPEWVSVGFSATTGINKGNVETNDVLS 225
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 226
Score = 35.1 bits (80), Expect = 2e-04
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
+ G SA +G + H+VL
Sbjct: 192 VEDWVSVGFSATSGSKKETTETHNVLS 218
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa),
isolectin b4 [TaxId: 3911]}
Length = 233
Score = 34.7 bits (79), Expect = 2e-04
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATG---DLSDNHDVLG 44
LP G SA TG + + HD++
Sbjct: 199 LPEYVRVGFSATTGLNAGVVETHDIVS 225
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos
biflorus), different isoforms [TaxId: 3840]}
Length = 253
Score = 33.9 bits (77), Expect = 4e-04
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATG---DLSDNHDVLG 44
LP G SA TG ++ HDVL
Sbjct: 200 LPEYVSIGFSATTGLSEGYTETHDVLS 226
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis,
leukoagglutinin [TaxId: 37501]}
Length = 239
Score = 34.0 bits (77), Expect = 4e-04
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 21 LPTGYYFGVSAATGDLSD--NHDVLG 44
LP G SAATG ++ HDVL
Sbjct: 207 LPEWVRVGFSAATGYPTEVETHDVLS 232
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia
pseudoacacia) [TaxId: 35938]}
Length = 237
Score = 34.0 bits (77), Expect = 5e-04
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSD---NHDVLG 44
LP FG SA TG +DVL
Sbjct: 202 LPEWVRFGFSATTGIDKGYVQTNDVLS 228
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId:
3847]}
Length = 251
Score = 32.8 bits (74), Expect = 0.001
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 21 LPTGYYFGVSAATGDLSDN--HDVLG 44
LP G SAATG HDVL
Sbjct: 200 LPEWVRIGFSAATGLDIPGESHDVLS 225
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin
{Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a
[TaxId: 3885]}
Length = 228
Score = 32.8 bits (74), Expect = 0.001
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATGDLSDN---HDVLG 44
+ G S +G D HDVL
Sbjct: 194 VDEWVSVGFSPTSGLTEDTTETHDVLS 220
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea)
[TaxId: 3818]}
Length = 232
Score = 32.4 bits (73), Expect = 0.002
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 21 LPTGYYFGVSAATGDLS-DNHDVLG 44
LP FG SA+ H +
Sbjct: 198 LPERVKFGFSASGSLGGRQIHLIRS 222
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia
ensiformis) [TaxId: 3823]}
Length = 237
Score = 31.8 bits (72), Expect = 0.002
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEKLSKGPFINL 65
LP G+SA+TG + + +L + + + ++
Sbjct: 85 LPEWVRVGLSASTGLYKETNTILSWS-FTSKLKSNSTHETNALHF 128
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina
crista-galli) [TaxId: 49817]}
Length = 239
Score = 28.9 bits (64), Expect = 0.027
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 21 LPTGYYFGVSAATG---DLSDNHDVLG 44
LP G+S ATG D ++ HDV
Sbjct: 204 LPDWVDVGLSGATGAQRDAAETHDVYS 230
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume
(Griffonia simplicifolia) [TaxId: 3850]}
Length = 243
Score = 26.2 bits (57), Expect = 0.25
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 21 LPTGYYFGVSAATGDLSDNHDVLG 44
LP G SA G + +L
Sbjct: 209 LPQKVRIGFSAGVG-YDEVTYILS 231
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia,
lectin I-b4 [TaxId: 3850]}
Length = 236
Score = 26.2 bits (57), Expect = 0.27
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 21 LPTGYYFGVSAATGD-LSDNHDVLG 44
LP G+SA+TG+ +L
Sbjct: 205 LPESVRVGISASTGNNQFLTVYILS 229
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II
[TaxId: 3902]}
Length = 237
Score = 25.0 bits (54), Expect = 0.65
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 21 LPTGYYFGVSAATGDLSD--NHDVLG 44
LP G S G+ ++ HDVL
Sbjct: 204 LPEWVSVGFSGGVGNAAEFETHDVLS 229
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I
[TaxId: 3902]}
Length = 240
Score = 25.1 bits (54), Expect = 0.73
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 21 LPTGYYFGVSAATG-DLSDNHDVLG 44
LP G S +T H+VL
Sbjct: 206 LPEWVSVGFSGSTYIGRQATHEVLN 230
>d1qbaa2 b.2.2.3 (A:28-200) Bacterial chitobiase, n-terminal domain
{Serratia marcescens [TaxId: 615]}
Length = 173
Score = 24.1 bits (52), Expect = 1.4
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 22 PTGYYFGVSAATGDLSDNHDVLGIRTYELEFPGEKLSKGP 61
+Y A + N D + + F G++ +
Sbjct: 120 LPRWYATSGDAKPKMLANTDTENLDQFVAPFTGDQWKRTK 159
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus
tetragonolobus), basic agglutinin [TaxId: 3891]}
Length = 237
Score = 24.3 bits (52), Expect = 1.4
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 21 LPTGYYFGVSAATGDLS-------DNHDVLG 44
LP G SAATGD S + HD+L
Sbjct: 198 LPESVNVGFSAATGDPSGKQRNATETHDILS 228
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus
tetragonolobus), acidic lectin [TaxId: 3891]}
Length = 234
Score = 24.3 bits (52), Expect = 1.4
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 26 YFGVSAATG---DLSDNHDVLG 44
G+SA TG + + H+++
Sbjct: 206 NVGLSATTGYQKNAVETHEIIS 227
>d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm
(Ascaris suum) [TaxId: 6253]}
Length = 147
Score = 22.8 bits (48), Expect = 3.4
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 3 DFENKAAWKECFKV 16
D K AW E +
Sbjct: 127 DEPTKQAWHEIGRE 140
>d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo)
[TaxId: 6431]}
Length = 141
Score = 22.4 bits (47), Expect = 4.5
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 3 DFENKAAWKECFKV 16
D AAW + V
Sbjct: 122 DPTTVAAWGDAAGV 135
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 430
Score = 22.7 bits (48), Expect = 5.2
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 10 WKECFKVSGVKLPTGYYFGV 29
+ F + +P G GV
Sbjct: 55 LAQWFNTRNLPMPDGDRLGV 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.137 0.420
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,188
Number of extensions: 8651
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 28
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.4 bits)