BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7203
(92 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/91 (96%), Positives = 91/91 (100%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QPIRFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 356 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPIRFGKLLLRLPSLRTVSSQVIEQLFF 415
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSFSWPY+NSM
Sbjct: 416 VRLVGKTPIETLIRDMLLSGSSFSWPYINSM 446
>gi|242006613|ref|XP_002424143.1| coup transcription factor, putative [Pediculus humanus corporis]
gi|212507468|gb|EEB11405.1| coup transcription factor, putative [Pediculus humanus corporis]
Length = 92
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/92 (95%), Positives = 91/92 (98%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
MDACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLF
Sbjct: 1 MDACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLF 60
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
FVRLVGKTPIETLIRDMLLSGSSFSWPYM+SM
Sbjct: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPYMSSM 92
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 310 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 369
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSF+WPYM++M
Sbjct: 370 VRLVGKTPIETLIRDMLLSGSSFNWPYMSTM 400
>gi|1036801|gb|AAA93013.1| svp, partial [Schistocerca americana]
Length = 121
Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIE LQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 31 DACGLSDVAHIEGLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 90
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSFSWPYM++M
Sbjct: 91 VRLVGKTPIETLIRDMLLSGSSFSWPYMSTM 121
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 234 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 293
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSF+WPYM++M
Sbjct: 294 VRLVGKTPIETLIRDMLLSGSSFNWPYMSTM 324
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 304 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 363
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSF+WPYM++M
Sbjct: 364 VRLVGKTPIETLIRDMLLSGSSFNWPYMSTM 394
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 254 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 313
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSF+WPYM++M
Sbjct: 314 VRLVGKTPIETLIRDMLLSGSSFNWPYMSTM 344
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 453 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 512
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SFSWPY+ SM
Sbjct: 513 VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM 543
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 453 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 512
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SFSWPY+ SM
Sbjct: 513 VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM 543
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 453 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 512
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SFSWPY+ SM
Sbjct: 513 VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM 543
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 453 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 512
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SFSWPY+ SM
Sbjct: 513 VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM 543
>gi|24646230|ref|NP_731682.1| seven up, isoform C [Drosophila melanogaster]
gi|18447096|gb|AAL68139.1| AT29920p [Drosophila melanogaster]
gi|23171092|gb|AAF54774.2| seven up, isoform C [Drosophila melanogaster]
gi|220942234|gb|ACL83660.1| svp-PC [synthetic construct]
gi|220952448|gb|ACL88767.1| svp-PC [synthetic construct]
Length = 281
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 191 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 250
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SFSWPY+ SM
Sbjct: 251 VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM 281
>gi|403182505|gb|EAT46025.2| AAEL002765-PA, partial [Aedes aegypti]
Length = 274
Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 184 DACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 243
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSFSWPY+ SM
Sbjct: 244 VRLVGKTPIETLIRDMLLSGSSFSWPYLPSM 274
>gi|332021402|gb|EGI61770.1| Steroid receptor seven-up, isoforms B/C [Acromyrmex echinatior]
Length = 212
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 90/91 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 122 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 181
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SF+WPY+++M
Sbjct: 182 VRLVGKTPIETLIRDMLLSGNSFNWPYISTM 212
>gi|312374365|gb|EFR21934.1| hypothetical protein AND_16007 [Anopheles darlingi]
Length = 162
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 72 DACGLSDVTHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 131
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSFSWPY+ SM
Sbjct: 132 VRLVGKTPIETLIRDMLLSGSSFSWPYLPSM 162
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 425 DACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 484
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSFSWPY+ SM
Sbjct: 485 VRLVGKTPIETLIRDMLLSGSSFSWPYLPSM 515
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 331 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 390
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG++FSWPYM +M
Sbjct: 391 VRLVGKTPIETLIRDMLLSGNTFSWPYMATM 421
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV HIE+LQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 452 DACGLSDVQHIETLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 511
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SFSWPY+ SM
Sbjct: 512 VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM 542
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSSQVIEQ FF
Sbjct: 403 DACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQFFF 462
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSFSWPY+ SM
Sbjct: 463 VRLVGKTPIETLIRDMLLSGSSFSWPYLPSM 493
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 177 bits (449), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 88/91 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV HIESLQEKSQCALEEYCRTQY +QP+RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 274 DACGLSDVGHIESLQEKSQCALEEYCRTQYANQPVRFGKLLLRLPSLRTVSSQVIEQLFF 333
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSF+WPYM SM
Sbjct: 334 VRLVGKTPIETLIRDMLLSGSSFNWPYMPSM 364
>gi|157131845|ref|XP_001655964.1| coup transcription factor [Aedes aegypti]
Length = 102
Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 12 DACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 71
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSGSSFSWPY+ SM
Sbjct: 72 VRLVGKTPIETLIRDMLLSGSSFSWPYLPSM 102
>gi|307190827|gb|EFN74679.1| Steroid receptor seven-up, isoforms B/C [Camponotus floridanus]
Length = 96
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/90 (93%), Positives = 88/90 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 5 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 64
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNS 91
VRLVGKTPIETLIRDMLLSG+SF+WPYM S
Sbjct: 65 VRLVGKTPIETLIRDMLLSGNSFNWPYMPS 94
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 87/88 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP++P RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 263 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNRPTRFGKLLLRLPSLRTVSSQVIEQLFF 322
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 323 VRLVGKTPIETLIRDMLLSGSSFNWPYM 350
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/88 (93%), Positives = 86/88 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIES+QEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 332 DACGLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFF 391
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSFSWPYM
Sbjct: 392 VRLVGKTPIETLIRDMLLSGSSFSWPYM 419
>gi|322800489|gb|EFZ21493.1| hypothetical protein SINV_13619 [Solenopsis invicta]
Length = 90
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 89/90 (98%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
ACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFFV
Sbjct: 1 ACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFV 60
Query: 63 RLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
RLVGKTPIETLIRDMLLSG+SF+WPY+++M
Sbjct: 61 RLVGKTPIETLIRDMLLSGNSFNWPYISTM 90
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 86/88 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIES+QEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 332 DACGLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFF 391
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTP+ETLIRDMLLSGSSFSWPYM
Sbjct: 392 VRLVGKTPVETLIRDMLLSGSSFSWPYM 419
>gi|209156457|pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 154 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 213
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 214 VRLVGKTPIETLIRDMLLSGSSFNWPYM 241
>gi|83835516|gb|ABC47791.1| nuclear receptor subfamily 2 group F member 2, partial [Phodopus
sungorus]
Length = 100
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 10 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 69
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 70 VRLVGKTPIETLIRDMLLSGSSFNWPYM 97
>gi|351697339|gb|EHB00258.1| COUP transcription factor 2 [Heterocephalus glaber]
Length = 271
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 181 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 240
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 241 VRLVGKTPIETLIRDMLLSGSSFNWPYM 268
>gi|223555951|ref|NP_001138628.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|223555953|ref|NP_001138629.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|73951115|ref|XP_858826.1| PREDICTED: COUP transcription factor 2 isoform 4 [Canis lupus
familiaris]
gi|114659052|ref|XP_001135366.1| PREDICTED: COUP transcription factor 2 isoform 2 [Pan troglodytes]
gi|332238782|ref|XP_003268581.1| PREDICTED: COUP transcription factor 2 isoform 3 [Nomascus
leucogenys]
gi|338717601|ref|XP_003363657.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Equus
caballus]
gi|403258148|ref|XP_003921639.1| PREDICTED: COUP transcription factor 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|403258150|ref|XP_003921640.1| PREDICTED: COUP transcription factor 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|410960650|ref|XP_003986902.1| PREDICTED: COUP transcription factor 2 isoform 2 [Felis catus]
gi|410960652|ref|XP_003986903.1| PREDICTED: COUP transcription factor 2 isoform 3 [Felis catus]
gi|441616841|ref|XP_004088401.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
gi|119622602|gb|EAX02197.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_c
[Homo sapiens]
gi|148675208|gb|EDL07155.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|148675209|gb|EDL07156.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|194385096|dbj|BAG60954.1| unnamed protein product [Homo sapiens]
gi|221045560|dbj|BAH14457.1| unnamed protein product [Homo sapiens]
gi|325495511|gb|ADZ17361.1| chicken ovalbumin upstream promoter-transcription factor II variant
3 [Homo sapiens]
gi|344238582|gb|EGV94685.1| COUP transcription factor 2 [Cricetulus griseus]
Length = 261
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 171 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 230
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 231 VRLVGKTPIETLIRDMLLSGSSFNWPYM 258
>gi|73611910|ref|NP_899084.2| COUP transcription factor 2 isoform 2 [Mus musculus]
gi|223555949|ref|NP_001138627.1| COUP transcription factor 2 isoform b [Homo sapiens]
gi|298228995|ref|NP_001177182.1| COUP transcription factor 2 isoform 2 [Sus scrofa]
gi|73951111|ref|XP_536178.2| PREDICTED: COUP transcription factor 2 isoform 1 [Canis lupus
familiaris]
gi|291409135|ref|XP_002720865.1| PREDICTED: nuclear receptor subfamily 2, group F, member 2-like
[Oryctolagus cuniculus]
gi|332238778|ref|XP_003268579.1| PREDICTED: COUP transcription factor 2 isoform 1 [Nomascus
leucogenys]
gi|338717599|ref|XP_003363656.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Equus
caballus]
gi|344284393|ref|XP_003413952.1| PREDICTED: COUP transcription factor 2 isoform 2 [Loxodonta
africana]
gi|354465707|ref|XP_003495319.1| PREDICTED: COUP transcription factor 2-like [Cricetulus griseus]
gi|395502497|ref|XP_003755616.1| PREDICTED: COUP transcription factor 2 isoform 2 [Sarcophilus
harrisii]
gi|403258146|ref|XP_003921638.1| PREDICTED: COUP transcription factor 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|410960648|ref|XP_003986901.1| PREDICTED: COUP transcription factor 2 isoform 1 [Felis catus]
gi|76780223|gb|AAI06084.1| NR2F2 protein [Homo sapiens]
gi|119622601|gb|EAX02196.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Homo sapiens]
gi|149057165|gb|EDM08488.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Rattus norvegicus]
gi|194295609|gb|ACF40832.1| orphan nuclear receptor COUP-TFII [Sus scrofa]
gi|194377044|dbj|BAG63083.1| unnamed protein product [Homo sapiens]
gi|283482326|emb|CAR63888.1| nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|325495509|gb|ADZ17360.1| chicken ovalbumin upstream promoter-transcription factor II variant
2 [Homo sapiens]
gi|384949090|gb|AFI38150.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|387542112|gb|AFJ71683.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|410216136|gb|JAA05287.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258702|gb|JAA17318.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307124|gb|JAA32162.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 281
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 191 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 250
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 251 VRLVGKTPIETLIRDMLLSGSSFNWPYM 278
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 338 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 397
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 398 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 426
>gi|242247451|ref|NP_001156015.1| COUP transcription factor 2 [Ovis aries]
gi|134024805|gb|AAI34736.1| NR2F2 protein [Bos taurus]
gi|238799806|gb|ACR55775.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 281
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 191 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 250
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 251 VRLVGKTPIETLIRDMLLSGSSFNWPYM 278
>gi|426248035|ref|XP_004017771.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Ovis aries]
gi|426248039|ref|XP_004017773.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 3 [Ovis aries]
gi|426248041|ref|XP_004017774.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 4 [Ovis aries]
gi|426248043|ref|XP_004017775.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 5 [Ovis aries]
Length = 261
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 171 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 230
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 231 VRLVGKTPIETLIRDMLLSGSSFNWPYM 258
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 332 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 391
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 392 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 420
>gi|355707891|gb|AES03097.1| nuclear receptor subfamily 2, group F, member 1 [Mustela putorius
furo]
Length = 275
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 186 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 245
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 246 VRLVGKTPIETLIRDMLLSGSSFNWPYM 273
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 333 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 392
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 393 VRLVGKTPIETLIRDMLLSGSSFNWPYM 420
>gi|426248037|ref|XP_004017772.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Ovis aries]
Length = 281
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 191 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 250
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 251 VRLVGKTPIETLIRDMLLSGSSFNWPYM 278
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 327 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 386
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 387 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 415
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 333 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 392
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 393 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 421
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 327 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 386
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 387 VRLVGKTPIETLIRDMLLSGSSFNWPYM 414
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 331 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 390
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 391 VRLVGKTPIETLIRDMLLSGSSFNWPYM 418
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 290 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 349
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 350 VRLVGKTPIETLIRDMLLSGSSFNWPYM 377
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 332 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 391
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 392 VRLVGKTPIETLIRDMLLSGSSFNWPYM 419
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 320 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 408
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 293 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 352
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 353 VRLVGKTPIETLIRDMLLSGSSFNWPYM 380
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 256 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 315
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 316 VRLVGKTPIETLIRDMLLSGSSFNWPYM 343
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 267 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 326
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 327 VRLVGKTPIETLIRDMLLSGSSFNWPYM 354
>gi|444519103|gb|ELV12583.1| COUP transcription factor 1 [Tupaia chinensis]
Length = 216
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 124 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 183
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 184 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 212
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 321 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 381 VRLVGKTPIETLIRDMLLSGSSFNWPYM 408
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 318 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 377
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 378 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 406
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 321 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 381 VRLVGKTPIETLIRDMLLSGSSFNWPYM 408
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 291 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 350
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 351 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 379
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 328 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 387
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 388 VRLVGKTPIETLIRDMLLSGSSFNWPYM 415
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 315 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 374
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 375 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 403
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 320 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 408
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 258 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 317
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 318 VRLVGKTPIETLIRDMLLSGSSFNWPYM 345
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 249 DACGLSDVTHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 308
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 309 VRLVGKTPIETLIRDMLLSGSSFNWPYM 336
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 253 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 312
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 313 VRLVGKTPIETLIRDMLLSGSSFNWPYM 340
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 320 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 408
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 315 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 374
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 375 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 403
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 323 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 382
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 383 VRLVGKTPIETLIRDMLLSGSSFNWPYM 410
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 262 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 321
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 322 VRLVGKTPIETLIRDMLLSGSSFNWPYM 349
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIE+LQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 345 DACGLSDAAHIENLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSQVIEQLFF 404
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 405 VRLVGKTPIETLIRDMLLSGSSFNWPYM 432
>gi|47196001|emb|CAF94879.1| unnamed protein product [Tetraodon nigroviridis]
Length = 132
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 83/88 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+E LQEKSQCALEEY R QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 42 DACGLSDVAHVEGLQEKSQCALEEYVRAQYPNQPNRFGKLLLRLPSLRTVSSAVIEQLFF 101
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
+RLVGKTPIETLIRDMLLSGSSFSWPYM
Sbjct: 102 IRLVGKTPIETLIRDMLLSGSSFSWPYM 129
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIE+LQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 382 DACGLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFF 441
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSFSWPYM
Sbjct: 442 VRLVGKTPIETLIRDMLLSGSSFSWPYM 469
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 1304 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 1363
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 1364 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 1392
>gi|47211605|emb|CAF91926.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 177 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 236
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 237 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 265
>gi|431907899|gb|ELK11506.1| COUP transcription factor 1 [Pteropus alecto]
Length = 263
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 171 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 230
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 231 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 259
>gi|354499555|ref|XP_003511874.1| PREDICTED: COUP transcription factor 1-like [Cricetulus griseus]
Length = 295
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 203 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 262
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 263 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 291
>gi|355691480|gb|EHH26665.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 270
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 178 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 237
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 238 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 266
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 84/89 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIE+LQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 246 DACGLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFF 305
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSFSWPYM
Sbjct: 306 VRLVGKTPIETLIRDMLLSGSSFSWPYMT 334
>gi|403256259|ref|XP_003920806.1| PREDICTED: COUP transcription factor 1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 281
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 85/90 (94%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLF
Sbjct: 188 FDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLF 247
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
FVRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 248 FVRLVGKTPIETLIRDMLLSGSSFNWPYMS 277
>gi|345317530|ref|XP_001520123.2| PREDICTED: COUP transcription factor 1-like [Ornithorhynchus
anatinus]
Length = 124
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 32 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 91
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 92 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 120
>gi|335283229|ref|XP_003354263.1| PREDICTED: COUP transcription factor 1-like isoform 3 [Sus scrofa]
gi|344253194|gb|EGW09298.1| COUP transcription factor 1 [Cricetulus griseus]
Length = 263
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 171 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 230
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 231 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 259
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 318 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 377
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 378 VRLVGKTPIETLIRDMLLSGSSFNWPYM 405
>gi|403256261|ref|XP_003920807.1| PREDICTED: COUP transcription factor 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 279
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 187 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 246
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 247 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 275
>gi|335283227|ref|XP_003354262.1| PREDICTED: COUP transcription factor 1-like isoform 2 [Sus scrofa]
gi|426349454|ref|XP_004042315.1| PREDICTED: COUP transcription factor 1 [Gorilla gorilla gorilla]
gi|151554252|gb|AAI49439.1| NR2F1 protein [Bos taurus]
Length = 273
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 181 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 240
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 241 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 269
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 320 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 408
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 468 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 527
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 528 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 556
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 321 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 381 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 409
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 412
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 320 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 408
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 321 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 381 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 409
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/89 (88%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLS+V+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 333 DACGLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 392
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 393 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 421
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 412
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 412
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 321 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 381 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 409
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 365 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 424
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 425 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 453
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 326 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 385
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 386 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 414
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQC LEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCXLEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/89 (88%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLS+V+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 327 DACGLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 386
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 387 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 415
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 291 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 350
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 351 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 379
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 266 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 325
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 326 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 354
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 322 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 381
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 382 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 410
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/89 (88%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HI+SLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 353 DACGLSDAAHIDSLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 412
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 413 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 441
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 319 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 378
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 379 VRLVGKTPIETLIRDMLLSGSSFNWPYM 406
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 328 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 387
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 388 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 416
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 331 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 391 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 419
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 305 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 364
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 365 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 393
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 306 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 365
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 366 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 394
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 280 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 339
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 340 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 368
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 327 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 386
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 387 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 415
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 332 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 391
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 392 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 420
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 312 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 371
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 372 VRLVGKTPIETLIRDMLLSGSSFNWPYM 399
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 330 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 389
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 390 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 418
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 331 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 391 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 419
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 326 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 385
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 386 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 414
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 331 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 391 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 419
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 290 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 349
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 350 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 378
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 318 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 377
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 378 VRLVGKTPIETLIRDMLLSGSSFNWPYM 405
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 276 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 335
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 336 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 364
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 330 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 389
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 390 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 418
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 431 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 490
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 491 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 519
>gi|355750064|gb|EHH54402.1| COUP transcription factor 1, partial [Macaca fascicularis]
Length = 269
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 177 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 236
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 237 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 265
>gi|449281976|gb|EMC88912.1| COUP transcription factor 2 [Columba livia]
Length = 281
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 85/88 (96%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
ACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFFV
Sbjct: 192 ACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFV 251
Query: 63 RLVGKTPIETLIRDMLLSGSSFSWPYMN 90
RLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 252 RLVGKTPIETLIRDMLLSGSSFNWPYMS 279
>gi|74223617|dbj|BAE28687.1| unnamed protein product [Mus musculus]
Length = 337
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 171 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 230
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 231 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 259
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 83/88 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+E LQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 341 DACGLSDVAHVEGLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSSVIEQLFF 400
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSG SFSWPYM
Sbjct: 401 VRLVGKTPIETLIRDMLLSGGSFSWPYM 428
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/89 (87%), Positives = 84/89 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 453 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 512
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSG++ + +N
Sbjct: 513 VRLVGKTPIETLIRDMLLSGNTVAAATLN 541
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 84/89 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 458 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 517
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSG++ + +N
Sbjct: 518 VRLVGKTPIETLIRDMLLSGNTVAAATLN 546
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD+ HIE LQEKSQCALEEY R+QYP+QP RFGKLLLRLP+LR VSS VIEQLFF
Sbjct: 299 DACGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 359 VRLVGKTPIETLIRDMLLSGSSFNWPYM 386
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD+ HIE LQEKSQCALEEY R+QYP+QP RFGKLLLRLP+LR VSS VIEQLFF
Sbjct: 298 DACGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFF 357
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 358 VRLVGKTPIETLIRDMLLSGSSFNWPYM 385
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 84/88 (95%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
ACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFFV
Sbjct: 244 ACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFV 303
Query: 63 RLVGKTPIETLIRDMLLSGSSFSWPYMN 90
RLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 304 RLVGKTPIETLIRDMLLSGSSFNWPYMS 331
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 84/89 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 449 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 508
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSG++ + +N
Sbjct: 509 VRLVGKTPIETLIRDMLLSGNTVAAATLN 537
>gi|351709883|gb|EHB12802.1| COUP transcription factor 1 [Heterocephalus glaber]
Length = 251
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 84/88 (95%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
ACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFFV
Sbjct: 160 ACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFV 219
Query: 63 RLVGKTPIETLIRDMLLSGSSFSWPYMN 90
RLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 220 RLVGKTPIETLIRDMLLSGSSFNWPYMS 247
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 84/89 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 449 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 508
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSG++ + +N
Sbjct: 509 VRLVGKTPIETLIRDMLLSGNTVAAATLN 537
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/82 (93%), Positives = 81/82 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 448 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 507
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
VRLVGKTPIETLIRDMLLSG++
Sbjct: 508 VRLVGKTPIETLIRDMLLSGNT 529
>gi|195329610|ref|XP_002031503.1| GM24010 [Drosophila sechellia]
gi|194120446|gb|EDW42489.1| GM24010 [Drosophila sechellia]
Length = 1085
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 78/89 (87%), Positives = 84/89 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 748 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 807
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSG++ + +N
Sbjct: 808 VRLVGKTPIETLIRDMLLSGNTVAAATLN 836
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/84 (91%), Positives = 82/84 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 451 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 510
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
VRLVGKTPIETLIRDMLLSG++ +
Sbjct: 511 VRLVGKTPIETLIRDMLLSGNTVA 534
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/82 (93%), Positives = 81/82 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 449 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 508
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
VRLVGKTPIETLIRDMLLSG++
Sbjct: 509 VRLVGKTPIETLIRDMLLSGNT 530
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/88 (85%), Positives = 83/88 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ACGLSD +HIE++QEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVS+QVIEQLFF
Sbjct: 345 NACGLSDATHIENIQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSAQVIEQLFF 404
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSG SF+W YM
Sbjct: 405 VRLVGKTPIETLIRDMLLSGGSFNWSYM 432
>gi|170056905|ref|XP_001864243.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876530|gb|EDS39913.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 284
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 76/82 (92%), Positives = 81/82 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 83 DACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 142
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
VRLVGKTPIETLIRDMLLSG++
Sbjct: 143 VRLVGKTPIETLIRDMLLSGTA 164
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 382 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 441
Query: 62 VRLVGKTPIETLIRDML 78
VRLVGKTPIETLIRDML
Sbjct: 442 VRLVGKTPIETLIRDML 458
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/87 (83%), Positives = 80/87 (91%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLSD++HIES+QEKSQCALEEY R QYP+QP RFGKLLLRLPSLRTVS+ IEQLFF
Sbjct: 325 DSHGLSDMTHIESVQEKSQCALEEYVRHQYPNQPSRFGKLLLRLPSLRTVSASAIEQLFF 384
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
VRLVGKTPIETLIRDMLLSGSS+ WPY
Sbjct: 385 VRLVGKTPIETLIRDMLLSGSSYGWPY 411
>gi|327283177|ref|XP_003226318.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Anolis carolinensis]
Length = 359
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/88 (86%), Positives = 81/88 (92%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VI F
Sbjct: 269 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIAVSXF 328
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 329 VRLVGKTPIETLIRDMLLSGSSFNWPYM 356
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/88 (82%), Positives = 79/88 (89%), Gaps = 1/88 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+ +ESLQEK+Q +LEEYCR QYP QP RFGKLLLRLPSLRTVSSQ IE LFF
Sbjct: 305 DACGLSDVTQVESLQEKTQSSLEEYCRAQYPQQPSRFGKLLLRLPSLRTVSSQTIEHLFF 364
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKT IETLIRDMLL G+SF+WPYM
Sbjct: 365 VRLVGKTSIETLIRDMLL-GNSFNWPYM 391
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 74/77 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 670 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 729
Query: 62 VRLVGKTPIETLIRDML 78
VRLVGKTPIETLIRDML
Sbjct: 730 VRLVGKTPIETLIRDML 746
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 62/65 (95%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLF
Sbjct: 288 LDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLF 347
Query: 61 FVRLV 65
FVRL+
Sbjct: 348 FVRLI 352
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/87 (75%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP++R V + +I QLFF
Sbjct: 301 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPAMRAVPASLISQLFF 360
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 361 MRLVGKTPIETLIRDMLLSGSTFNWPY 387
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/88 (88%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+E LQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLR+VSS VIEQLFF
Sbjct: 320 DACGLSDVAHVEGLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRSVSSSVIEQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFNWPYM 407
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/88 (87%), Positives = 84/88 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEK+QCALEEY R+QYP+QP RFGKLLLRLPSLR+VS+QVIEQLFF
Sbjct: 338 DACGLSDSAHIESLQEKAQCALEEYDRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFF 397
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSG SF+WPYM
Sbjct: 398 VRLVGKTPIETLIRDMLLSGGSFNWPYM 425
>gi|224587886|gb|ACN58733.1| Nuclear receptor subfamily 2 group F member 5 [Salmo salar]
Length = 178
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/88 (85%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSDV+H+ES+QEKSQCALEEY R QYPSQP RFG+LLLRLPSLR VSS VIEQLFF
Sbjct: 74 DAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFF 133
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETL+RDMLLSGSS++WPYM
Sbjct: 134 VRLVGKTPIETLLRDMLLSGSSYNWPYM 161
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/92 (72%), Positives = 77/92 (83%), Gaps = 5/92 (5%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSL-----RTVSSQVI 56
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+L R V + +I
Sbjct: 287 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALGARRARAVPASLI 346
Query: 57 EQLFFVRLVGKTPIETLIRDMLLSGSSFSWPY 88
QLFF+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 347 SQLFFMRLVGKTPIETLIRDMLLSGSTFNWPY 378
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 73/81 (90%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA G+SD +H+ES+QEK+QCALEEY R QYP QP RFG+LLLRLPS+RTVS VIEQLFF
Sbjct: 345 DAPGVSDPAHVESIQEKAQCALEEYTRCQYPGQPSRFGRLLLRLPSVRTVSPHVIEQLFF 404
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
VRLVGKTPIETLIRDMLLSGS
Sbjct: 405 VRLVGKTPIETLIRDMLLSGS 425
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 81/88 (92%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD+ H+ES+QEKSQCALEEY R QYP+QP RFG+LLLRLPSLR VS+ VIEQLFF
Sbjct: 308 DAVGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFF 367
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 368 VRLVGKTPIETLIRDMLLSGSSFNWPYM 395
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 81/88 (92%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD+ H+ES+QEKSQCALEEY R QYP+QP RFG+LLLRLPSLR VS+ VIEQLFF
Sbjct: 307 DAVGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFF 366
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 367 VRLVGKTPIETLIRDMLLSGSSFNWPYM 394
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/88 (85%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSDV+H+ES+QEKSQCALEEY R QYPSQP RFG+LLLRLPSLR VSS VIEQLFF
Sbjct: 299 DAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETL+RDMLLSGSS++WPYM
Sbjct: 359 VRLVGKTPIETLLRDMLLSGSSYNWPYM 386
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/88 (85%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSDV+H+ES+QEKSQCALEEY R QYPSQP RFG+LLLRLPSLR VSS VIEQLFF
Sbjct: 299 DAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETL+RDMLLSGSS++WPYM
Sbjct: 359 VRLVGKTPIETLLRDMLLSGSSYNWPYM 386
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/88 (85%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSDV+H+ES+QEKSQCALEEY R QYPSQP RFG+LLLRLPSLR VSS VIEQLFF
Sbjct: 299 DAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETL+RDMLLSGSS++WPYM
Sbjct: 359 VRLVGKTPIETLLRDMLLSGSSYNWPYM 386
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSDV+H+ES+QEKSQCALEEY R QYP+QP RFG+LLLRLPSLR VSS VIEQLFF
Sbjct: 299 DAMGLSDVAHVESIQEKSQCALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETL+RDMLLSGSS++WPYM
Sbjct: 359 VRLVGKTPIETLLRDMLLSGSSYNWPYM 386
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/89 (69%), Positives = 76/89 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D +IE+LQEK+ ALE+Y +TQYP QP RFGKLLLR PS+R +S+ VIEQLFF
Sbjct: 407 DAPGLNDPQYIETLQEKTYFALEDYIKTQYPLQPTRFGKLLLRFPSIRIISATVIEQLFF 466
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRD+L+SG+S+ WP +N
Sbjct: 467 VRLVGKTPIETLIRDILISGTSYDWPTLN 495
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/87 (85%), Positives = 81/87 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSDV+H+ES+QEKSQCALEEY R QYPSQP RFG+LLLRLPSLR VSS VIEQLFF
Sbjct: 297 DAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFF 356
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
VRLVGKTPIETL+RDMLLSGSS++WPY
Sbjct: 357 VRLVGKTPIETLLRDMLLSGSSYNWPY 383
>gi|327287768|ref|XP_003228600.1| PREDICTED: COUP transcription factor 2-like, partial [Anolis
carolinensis]
Length = 266
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 80/88 (90%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D+ H+E++QEKSQCALEEY R QYPSQP RFG+LLLRLPSLR VS+ VIEQLFF
Sbjct: 176 DAVGLTDLCHVENVQEKSQCALEEYVRNQYPSQPSRFGRLLLRLPSLRIVSAPVIEQLFF 235
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGS F+WPY+
Sbjct: 236 VRLVGKTPIETLIRDMLLSGSGFNWPYI 263
>gi|224797875|gb|ACN62901.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 71
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 66/69 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 3 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 62
Query: 62 VRLVGKTPI 70
VRLVGKTPI
Sbjct: 63 VRLVGKTPI 71
>gi|339248547|ref|XP_003373261.1| COUP transcription factor 2 [Trichinella spiralis]
gi|316970660|gb|EFV54553.1| COUP transcription factor 2 [Trichinella spiralis]
Length = 110
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 78/88 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLS+V I LQEK+QCALEEYC+ QYP+Q RFGKLLLRLPSLR++SS VIEQLFF
Sbjct: 20 DACGLSEVGRINLLQEKAQCALEEYCKAQYPTQLNRFGKLLLRLPSLRSISSSVIEQLFF 79
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSG++ WPYM
Sbjct: 80 VRLVGKTPIETLIRDMLLSGNNLIWPYM 107
>gi|380799419|gb|AFE71585.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 144
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 54 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 113
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 114 MRLVGKTPIETLIRDMLLSGSTFNWPY 140
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 862 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 921
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 922 MRLVGKTPIETLIRDMLLSGSTFNWPY 948
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 79/88 (89%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D +IESLQEK+QCALEEY R QYP+QP RFGKLLLRLPSLR++SS V+EQLFF
Sbjct: 276 DASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSISSSVVEQLFF 335
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETL+RDMLLSG+ +WPY+
Sbjct: 336 VRLVGKTPIETLLRDMLLSGTPTTWPYL 363
>gi|355707900|gb|AES03100.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 214
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 125 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 184
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 185 MRLVGKTPIETLIRDMLLSGSTFNWPY 211
>gi|194223734|ref|XP_001499769.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Equus caballus]
Length = 185
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 95 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 154
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+FSWPY
Sbjct: 155 MRLVGKTPIETLIRDMLLSGSTFSWPY 181
>gi|149036142|gb|EDL90808.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b
[Rattus norvegicus]
Length = 134
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 45 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 104
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 105 MRLVGKTPIETLIRDMLLSGSTFNWPY 131
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYP+QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 306 DACGLSDPAHVESLQEKAQVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLISQLFF 365
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+FSWPY
Sbjct: 366 MRLVGKTPIETLIRDMLLSGSTFSWPY 392
>gi|240978306|ref|XP_002402921.1| coup transcription factor, putative [Ixodes scapularis]
gi|215491245|gb|EEC00886.1| coup transcription factor, putative [Ixodes scapularis]
Length = 236
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/62 (95%), Positives = 61/62 (98%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 16 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 75
Query: 62 VR 63
VR
Sbjct: 76 VR 77
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 300 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 359
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 360 MRLVGKTPIETLIRDMLLSGSTFNWPY 386
>gi|284424952|dbj|BAI67122.1| nuclear receptor [Taeniopygia guttata]
Length = 181
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 63/66 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 116 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 175
Query: 62 VRLVGK 67
VRLVGK
Sbjct: 176 VRLVGK 181
>gi|344241392|gb|EGV97495.1| Nuclear receptor subfamily 2 group F member 6 [Cricetulus
griseus]
Length = 91
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 2 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 61
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 62 MRLVGKTPIETLIRDMLLSGSTFNWPY 88
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 252 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 311
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 312 MRLVGKTPIETLIRDMLLSGSTFNWPY 338
>gi|432095516|gb|ELK26668.1| Usher syndrome type-1C protein-binding protein 1 [Myotis davidii]
Length = 768
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 678 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 737
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 738 MRLVGKTPIETLIRDMLLSGSTFNWPY 764
>gi|363745928|ref|XP_003643465.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Gallus gallus]
Length = 300
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+E LQEK+Q AL EY R+QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 210 DACGLSDPAHVEGLQEKAQVALTEYVRSQYPSQPQRFGRLLLRLPALRAVPAALISQLFF 269
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 270 MRLVGKTPIETLIRDMLLSGSTFNWPY 296
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 301 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 360
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 361 MRLVGKTPIETLIRDMLLSGSTFNWPY 387
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 77/88 (87%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 642 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAALISQLFF 701
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 702 MRLVGKTPIETLIRDMLLSGSTFNWPYA 729
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 301 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 360
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 361 MRLVGKTPIETLIRDMLLSGSTFNWPY 387
>gi|351702441|gb|EHB05360.1| Nuclear receptor subfamily 2 group F member 6 [Heterocephalus
glaber]
Length = 180
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYP+QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 90 DACGLSDPAHVESLQEKAQVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLISQLFF 149
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGSSFSWPY
Sbjct: 150 MRLVGKTPIETLIRDMLLSGSSFSWPY 176
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 313 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 372
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 373 MRLVGKTPIETLIRDMLLSGSTFNWPY 399
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 374 MRLVGKTPIETLIRDMLLSGSTFNWPY 400
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 374 MRLVGKTPIETLIRDMLLSGSTFNWPY 400
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 320 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 380 MRLVGKTPIETLIRDMLLSGSTFNWPY 406
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 374 MRLVGKTPIETLIRDMLLSGSTFNWPY 400
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 351 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 410
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 411 MRLVGKTPIETLIRDMLLSGSTFNWPY 437
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 391 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 450
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 451 MRLVGKTPIETLIRDMLLSGSTFNWPY 477
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 311 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 370
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 371 MRLVGKTPIETLIRDMLLSGSTFNWPY 397
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 374 MRLVGKTPIETLIRDMLLSGSTFNWPY 400
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 324 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 384 MRLVGKTPIETLIRDMLLSGSTFNWPY 410
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 322 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 381
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 382 MRLVGKTPIETLIRDMLLSGSTFNWPY 408
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 296 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 355
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 356 MRLVGKTPIETLIRDMLLSGSTFNWPY 382
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 326 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 385
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 386 MRLVGKTPIETLIRDMLLSGSTFNWPY 412
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 287 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 346
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 347 MRLVGKTPIETLIRDMLLSGSTFNWPY 373
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 299 DACGLTDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGSSF+WPY
Sbjct: 359 MRLVGKTPIETLIRDMLLSGSSFNWPY 385
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 299 DACGLTDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGSSF+WPY
Sbjct: 359 MRLVGKTPIETLIRDMLLSGSSFNWPY 385
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 293 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 352
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 353 MRLVGKTPIETLIRDMLLSGSTFNWPY 379
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 287 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 346
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 347 MRLVGKTPIETLIRDMLLSGSTFNWPY 373
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 79/88 (89%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D +IESLQEK+QCALEEY R QYP+QP RFGKLLLRLPSLR+++S ++EQLFF
Sbjct: 278 DASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSINSSIVEQLFF 337
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPI+TL+RDMLLSG+ SWPY+
Sbjct: 338 VRLVGKTPIDTLLRDMLLSGTPTSWPYL 365
>gi|355703292|gb|EHH29783.1| hypothetical protein EGK_10292, partial [Macaca mulatta]
Length = 227
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 137 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 196
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 197 MRLVGKTPIETLIRDMLLSGSTFNWPY 223
>gi|410950838|ref|XP_003982110.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Felis
catus]
Length = 263
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 173 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 232
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 233 MRLVGKTPIETLIRDMLLSGSTFNWPY 259
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 276 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 335
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 336 MRLVGKTPIETLIRDMLLSGSTFNWPY 362
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 66/87 (75%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I +LFF
Sbjct: 301 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISKLFF 360
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 361 MRLVGKTPIETLIRDMLLSGSTFNWPY 387
>gi|395750689|ref|XP_002828930.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pongo
abelii]
Length = 215
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 125 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 184
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 185 MRLVGKTPIETLIRDMLLSGSTFNWPY 211
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 233 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 292
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 293 MRLVGKTPIETLIRDMLLSGSTFNWPY 319
>gi|403303546|ref|XP_003942387.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Saimiri
boliviensis boliviensis]
Length = 238
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 148 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 207
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 208 MRLVGKTPIETLIRDMLLSGSTFNWPY 234
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 339 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 398
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 399 MRLVGKTPIETLIRDMLLSGSTFNWPY 425
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 76/87 (87%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYP+QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 318 DACGLSDPAHVESLQEKAQVALTEYVRAQYPAQPQRFGRLLLRLPALRAVPASLISQLFF 377
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+FSW Y
Sbjct: 378 MRLVGKTPIETLIRDMLLSGSTFSWAY 404
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 77/90 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 316 DACGLTDPAHVESLQEKAQVALTEYERIQYPSQPQRFGRLLLRLPALRAVPANLISQLFF 375
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNS 91
+RLVGKTPIETLIRDM LSGSS SWPYM+
Sbjct: 376 MRLVGKTPIETLIRDMQLSGSSISWPYMSG 405
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+E+LQEK+Q AL EY R Q+P+QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 228 DACGLSDPAHVETLQEKAQVALTEYERAQFPAQPQRFGRLLLRLPALRAVPAALISQLFF 287
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 288 MRLVGKTPIETLIRDMLLSGSTFNWPY 314
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D +H+ESLQEK+Q AL EY R QYP QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 342 DACGLTDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFF 401
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNS 91
+RLVGKTPIETLIRDM LSGSS SWPYM+
Sbjct: 402 MRLVGKTPIETLIRDMQLSGSSISWPYMSG 431
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 75/88 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYP QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFF 373
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
+RLVGKTPIETLIRDM LSGSS SWPY+
Sbjct: 374 MRLVGKTPIETLIRDMQLSGSSISWPYV 401
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 75/87 (86%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 316 DACGLTDPAHVESLQEKAQVALTEYERLQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 375
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDM LSGSS SWPY
Sbjct: 376 MRLVGKTPIETLIRDMQLSGSSISWPY 402
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 75/87 (86%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D +H+ESLQEK+Q AL EY R QYP+QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 317 DACGLTDPAHVESLQEKAQVALTEYERLQYPNQPQRFGRLLLRLPALRAVPANLISQLFF 376
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDM LSGSS SWPY
Sbjct: 377 MRLVGKTPIETLIRDMQLSGSSISWPY 403
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 75/88 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 316 DACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPANLISQLFF 375
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
+RLVGKTPIETLIRDM LSGSS SWPY+
Sbjct: 376 MRLVGKTPIETLIRDMQLSGSSISWPYV 403
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 75/88 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 338 DACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 397
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
+RLVGKTPIETLIRDM LSGSS SWPY+
Sbjct: 398 MRLVGKTPIETLIRDMQLSGSSISWPYV 425
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 75/88 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 314 DACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
+RLVGKTPIETLIRDM LSGSS SWPY+
Sbjct: 374 MRLVGKTPIETLIRDMQLSGSSISWPYV 401
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 74/87 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D +H+ESLQEK+Q AL EY R QYP QP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 312 DACGLTDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPASLISQLFF 371
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDM LSGSS SWPY
Sbjct: 372 MRLVGKTPIETLIRDMQLSGSSISWPY 398
>gi|395825625|ref|XP_003786025.1| PREDICTED: COUP transcription factor 1 [Otolemur garnettii]
Length = 267
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 59/64 (92%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 181 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 240
Query: 62 VRLV 65
VRL
Sbjct: 241 VRLA 244
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 59/64 (92%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 331 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
Query: 62 VRLV 65
VRL
Sbjct: 391 VRLA 394
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 75/88 (85%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGL+D H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 315 DACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 374
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
+RL+GKTPIETLIRDM LSG+S SWP+M
Sbjct: 375 MRLIGKTPIETLIRDMQLSGNSISWPHM 402
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 56/59 (94%)
Query: 32 PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
P QP RFGKLLLRLPSLRTVSS VIEQLFFVRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 270 PHQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMS 328
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLF
Sbjct: 305 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLF 363
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria chalumnae]
Length = 274
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 52/55 (94%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVI 56
DACGLSDV+HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VI
Sbjct: 220 DACGLSDVAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 274
>gi|44969507|gb|AAS49607.1| nuclear receptor subfamily 2 group F member 1 [Scyliorhinus
canicula]
Length = 273
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/55 (87%), Positives = 51/55 (92%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVI 56
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VI
Sbjct: 219 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 71/92 (77%), Gaps = 5/92 (5%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D CGLSDV +ES+QEK Q ALEEYCRTQ Q RFG+LLLRLPSLRT+SS +IEQLFF
Sbjct: 322 DCCGLSDVMRVESIQEKVQSALEEYCRTQRQQQIGRFGRLLLRLPSLRTISSTMIEQLFF 381
Query: 62 VRLVGKTPIETLIRDMLLSGSS-----FSWPY 88
V+LVG+TPIE L+RDML + S F WPY
Sbjct: 382 VKLVGETPIEFLLRDMLGAQSENVVKPFVWPY 413
>gi|170048338|ref|XP_001851983.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870434|gb|EDS33817.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 325
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/49 (91%), Positives = 48/49 (97%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTV 51
ACGLSDV+HIESLQEKSQCALEEYCR+QYP+QP RFGKLLLRLPSLRTV
Sbjct: 49 ACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTV 97
>gi|44964709|gb|AAS49526.1| nuclear receptor subfamily 2 group F number 1 [Protopterus dolloi]
Length = 273
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/54 (87%), Positives = 50/54 (92%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVI 56
ACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VI
Sbjct: 220 ACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 60/82 (73%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D LSD +HIESL+EK +LE YCR++YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 340 DVKNLSDPAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 399
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G TPI+ + DML + SS
Sbjct: 400 FKLIGDTPIDKFLMDMLETPSS 421
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 60/83 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D LSD +HIESL+EK +LE YCR++YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 253 DVKNLSDSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 312
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
+L+G TPI+ + +ML + S F
Sbjct: 313 FKLIGDTPIDKFLMNMLETTSDF 335
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 60/63 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLR+VS+QVIEQLFF
Sbjct: 240 DACGLSDTAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFF 299
Query: 62 VRL 64
VRL
Sbjct: 300 VRL 302
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D S +ESL+EK +LEEYC+ QYP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 118 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 177
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 178 FKLIGDTPIDTFLMEML 194
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 60/83 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D LSD +HIESL+EK +LE YCR++YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 429 DVKNLSDSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 488
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
+L+G TPI+ + +ML + S F
Sbjct: 489 FKLIGDTPIDKFLMNMLETTSDF 511
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D S +ESL+EK +LEEYC+ QYP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 143 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 202
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 203 FKLIGDTPIDTFLMEML 219
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L++ ++I +LQEK+ ALE Y +T+YP QP RFGKLLLRL S+R +++ VIEQLFF
Sbjct: 240 DTPSLNNSAYIHTLQEKAMNALESYTKTKYPLQPARFGKLLLRLSSIRPINTVVIEQLFF 299
Query: 62 VRLVGKTPIETLIRDMLLSG--SSFSW 86
LVGKTPIET+I+D + S+ W
Sbjct: 300 TWLVGKTPIETIIQDYMFGAPNQSYQW 326
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D S +ESL+EK +LEEYC+ QYP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 408 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 467
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 468 FKLIGDTPIDTFLMEML 484
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D S +ESL+EK +LEEYC+ QYP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 348 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 407
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 408 FKLIGDTPIDTFLMEML 424
>gi|312065719|ref|XP_003135926.1| hypothetical protein LOAG_00338 [Loa loa]
gi|307768898|gb|EFO28132.1| hypothetical protein LOAG_00338 [Loa loa]
Length = 212
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 72/92 (78%), Gaps = 5/92 (5%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D CGL+DV +E++QEK Q ALEEYCRTQ Q RFG+LLLRLPSLR++S+ VIEQLF
Sbjct: 116 VDCCGLNDVIRVETIQEKVQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLF 175
Query: 61 FVRLVGKTPIETLIRDMLLSGS-----SFSWP 87
FV+LVG+TPIE L+RDML + + SF WP
Sbjct: 176 FVKLVGETPIEFLLRDMLGTQNENVIKSFVWP 207
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D SD +HIESL+EK +LE YCR++YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 174 DVKNPSDSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 233
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
+L+G TPI+ + +ML + S F
Sbjct: 234 FKLIGDTPIDKFLMNMLETTSDF 256
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL D H+E+LQ+++Q L+++ R+Q+P+ P+RFG+LLL LPSLRTVSS IE LFF
Sbjct: 389 DARGLKDCHHVEALQDQAQLMLQQHVRSQHPTHPVRFGRLLLMLPSLRTVSSDKIESLFF 448
Query: 62 VRLVGKTPIETLIRDML 78
+++G TP+E L+ DM
Sbjct: 449 QKIIGSTPMEKLLCDMF 465
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS V +E L+EK +LEEYC+T+YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 358 DAKGLSAVQEVEQLREKVYASLEEYCKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 418 FKLIGDTPIDTFLMEML 434
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS ++ +E+L+EK +LEEYC+T YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 457 DAKGLSAITDVEALREKVYASLEEYCKTHYPEEPGRFAKLLLRLPALRSIGLKCMEHLFF 516
Query: 62 VRLVGKTPIETLIRDMLLS 80
+L+G TPI++ + +ML S
Sbjct: 517 FKLIGDTPIDSFLMEMLES 535
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 71/92 (77%), Gaps = 5/92 (5%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D CGL+DV +E++QEK Q ALEEYCRTQ Q RFG+LLLRLPSLR++S+ VIEQLF
Sbjct: 434 VDCCGLNDVIRVETIQEKVQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLF 493
Query: 61 FVRLVGKTPIETLIRDMLLSGSS-----FSWP 87
FV+LVG+TPIE L+RDML + + F WP
Sbjct: 494 FVKLVGETPIEFLLRDMLRTQNENVIKPFVWP 525
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA G+S VS +E L+EK +LEEYC+ YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 362 DAKGVSAVSEVEQLREKVYASLEEYCKMHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 421
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L+G TPI+T + +ML S S S
Sbjct: 422 FKLIGDTPIDTFLLEMLESPSPSS 445
>gi|402590411|gb|EJW84341.1| hypothetical protein WUBG_04747 [Wuchereria bancrofti]
Length = 537
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 71/92 (77%), Gaps = 5/92 (5%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D CGL+DV +E++QEK Q ALEEYCRTQ Q RFG+LLLRLPSLR++S+ VIEQLF
Sbjct: 441 IDCCGLNDVIRVETIQEKVQSALEEYCRTQKQLQIGRFGRLLLRLPSLRSISASVIEQLF 500
Query: 61 FVRLVGKTPIETLIRDMLLSGSS-----FSWP 87
FV+LVG+TPIE L+RDML + + F WP
Sbjct: 501 FVKLVGETPIEFLLRDMLRTQNENVIKPFVWP 532
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL + + +E+L+EK ALEE+CR +P QP RFGKLLLRLP+LR++ + +E LFF
Sbjct: 332 DAKGLRNATRVEALREKVYAALEEHCRRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 391
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI++ + +ML
Sbjct: 392 FKLIGDTPIDSFLLNML 408
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++S + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSISLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS + +E+L+EK +LEEY +T+YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 383 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 442
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+L+G TPI+T + +ML S S
Sbjct: 443 FKLIGDTPIDTFLMEMLESPS 463
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL V +E L+EK +LEEYC+ +YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 358 DAKGLQSVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+L+G+TPI+T + +ML S S
Sbjct: 418 FKLIGQTPIDTFLMEMLESPS 438
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL V +E L+EK +LEEYC+ +YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 363 DAKGLQSVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 422
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+L+G+TPI+T + +ML S S
Sbjct: 423 FKLIGQTPIDTFLMEMLESPS 443
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL V +E L+EK +LEEYC+ +YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 347 DAKGLQSVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+L+G+TPI+T + +ML S S
Sbjct: 407 FKLIGQTPIDTFLMEMLESPS 427
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS + +E+L+EK +LEEY +T+YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 387 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+L+G TPI+T + +ML S S
Sbjct: 447 FKLIGDTPIDTFLMEMLESPS 467
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS + +E+L+EK +LEEY +T+YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 363 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 422
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+L+G TPI+T + +ML S S
Sbjct: 423 FKLIGDTPIDTFLMEMLESPS 443
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 59/82 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL V +E L+EK +LEEYC+ +YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 356 DAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G TPI+T + +ML S S+
Sbjct: 416 FKLIGDTPIDTFLMEMLESPST 437
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS + +E+L+EK +LEEY +T+YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 367 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 426
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+L+G TPI+T + +ML S S
Sbjct: 427 FKLIGDTPIDTFLMEMLESPS 447
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 364 DSKGLSNPSEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 423
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 424 FKLIGDTPIDTFLMEML 440
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 59/82 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL V +E L+EK +LEEYC+ +YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 361 DAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 420
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G TPI+T + +ML S S+
Sbjct: 421 FKLIGDTPIDTFLMEMLESPST 442
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 376 DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 435
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 436 FKLIGDTPIDTFLMEML 452
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 159 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 218
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 219 FKLIGDTPIDTFLMEML 235
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 161 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 220
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 221 FKLIGDTPIDTFLMEML 237
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 215 FKLIGDTPIDTFLMEML 231
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 157 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 216
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 217 FKLIGDTPIDTFLMEML 233
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 159 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 218
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 219 FKLIGDTPIDTFLMEML 235
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 215 FKLIGDTPIDTFLMEML 231
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 156 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 215
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 216 FKLIGDTPIDTFLMEML 232
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 153 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 213 FKLIGDTPIDTFLMEML 229
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 215 FKLIGDTPIDTFLMEML 231
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 104 DSKGLSNPAEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 163
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 164 FKLIGDTPIDTFLMEML 180
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 157 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 216
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 217 FKLIGDTPIDTFLMEML 233
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 198 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 257
Query: 62 VRLVGKTPIETLIRDML 78
RL+G TPI+T + +ML
Sbjct: 258 FRLIGDTPIDTFLMEML 274
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 151 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 210
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 211 FKLIGDTPIDTFLMEML 227
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 152 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 212 FKLIGDTPIDTFLMEML 228
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 153 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 213 FKLIGDTPIDTFLMEML 229
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 152 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 212 FKLIGDTPIDTFLMEML 228
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA L V +E L+EK +LEEYCR YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G TPI+T + +ML + SS
Sbjct: 509 FKLIGDTPIDTFLMEMLEAPSS 530
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 119 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 178
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 179 FKLIGDTPIDTFLMEML 195
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 414 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 473
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 474 FKLIGDTPIDTFLMEML 490
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA L V +E L+EK +LEEYCR YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 415 DAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 474
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G TPI+T + +ML + SS
Sbjct: 475 FKLIGDTPIDTFLMEMLEAPSS 496
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 409 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 468
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 469 FKLIGDTPIDTFLMEML 485
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 375 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 435 FKLIGDTPIDTFLMEML 451
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 350 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 409
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 410 FKLIGDTPIDTFLMEML 426
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 433 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 492
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 493 FKLIGDTPIDTFLMEML 509
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 385 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 445 FKLIGDTPIDTFLMEML 461
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 416 FKLIGDTPIDTFLMEML 432
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+E+ +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 119 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 178
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 179 FKLIGDTPIDTFLMEML 195
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 466 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 525
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 526 FKLIGDTPIDTFLMEML 542
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 396 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 455
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 456 FKLIGDTPIDTFLMEML 472
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 439 FKLIGDTPIDTFLMEML 455
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 439 FKLIGDTPIDTFLMEML 455
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 416 FKLIGDTPIDTFLMEML 432
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 248 DSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 307
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 308 FKLIGDTPIDTFLMEML 324
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 433 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 492
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 493 FKLIGDTPIDTFLMEML 509
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 416 FKLIGDTPIDTFLMEML 432
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 282 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 342 FKLIGDTPIDTFLMEML 358
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 374 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 433
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 434 FKLIGDTPIDTFLMEML 450
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 389 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 448
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 449 FKLIGDTPIDTFLMEML 465
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 416 FKLIGDTPIDTFLMEML 432
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 402 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 461
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 462 FKLIGDTPIDTFLMEML 478
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 416 FKLIGDTPIDTFLMEML 432
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 404 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 463
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 464 FKLIGDTPIDTFLMEML 480
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 370 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 430 FKLIGDTPIDTFLMEML 446
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 533 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 592
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 593 FKLIGDTPIDTFLMEML 609
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 406 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 465
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 466 FKLIGDTPIDTFLMEML 482
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 369 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 429 FKLIGDTPIDTFLMEML 445
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 348 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 407
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 408 FKLIGDTPIDTFLMEML 424
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 235 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 294
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 295 FKLIGDTPIDTFLMEML 311
>gi|297269916|ref|XP_001118265.2| PREDICTED: retinoic acid receptor RXR-alpha, partial [Macaca
mulatta]
Length = 277
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 194 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 253
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 254 FKLIGDTPIDTFLMEML 270
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 370 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 430 FKLIGDTPIDTFLMEML 446
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 504 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 563
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 564 FKLIGDTPIDTFLMEML 580
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 199 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 258
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 259 FKLIGDTPIDTFLMEML 275
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 520 DSKGLSNPAEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 579
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 580 FKLIGDTPIDTFLMEML 596
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 444 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 503
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 504 FKLIGDTPIDTFLMEML 520
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 321 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 380
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 381 FKLIGDTPIDTFLMEML 397
>gi|350596072|ref|XP_003360721.2| PREDICTED: hypothetical protein LOC100620985 [Sus scrofa]
Length = 462
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 60/76 (78%)
Query: 13 ESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIET 72
+SLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLF TPIET
Sbjct: 383 QSLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFXXXXXXXTPIET 442
Query: 73 LIRDMLLSGSSFSWPY 88
LIRDMLLSGS+F+WPY
Sbjct: 443 LIRDMLLSGSTFNWPY 458
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 474 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 533
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 534 FKLIGDTPIDTFLMEML 550
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 303 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 362
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 363 FKLIGDTPIDTFLMEML 379
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 174 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 233
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 234 FKLIGDTPIDTFLMEML 250
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 282 DSKGLSNPAEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 342 FKLIGDTPIDTFLMEML 358
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 673 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 732
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 733 FKLIGDTPIDTFLMEML 749
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 282 DSKGLSNPAEVETLREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 342 FKLIGDTPIDTFLMEML 358
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E+ +EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 394 DAKGLSSPSGVEAFREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 453
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 454 FKLIGDTPIDTFLMEML 470
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 388 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 448 FKLIGDTPIDTFLMEML 464
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+E+ +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 308 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 367
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 368 FKLIGDTPIDTFLMEML 384
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 698 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 757
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 758 FKLIGDTPIDTFLMEML 774
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 375 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 435 FKLIGDTPIDTFLMEML 451
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 347 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 407 FKLIGDTPIDTFLMEML 423
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+E+ +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 296 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 355
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 356 FKLIGDTPIDTFLMEML 372
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 335 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 394
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 395 FKLIGDTPIDTFLMEML 411
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 158 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 217
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 218 FKLIGDTPIDTFLMEML 234
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 214 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 274 FKLIGDTPIDTFLMEML 290
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 291 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKRLEHLFF 350
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 351 FKLIGDTPIDTFLMEML 367
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 62 VRLVGKTPIETLIRDML 78
+L G TPI+T + +ML
Sbjct: 439 FKLTGDTPIDTFLMEML 455
>gi|4102801|gb|AAD01591.1| retinoid X receptor gamma [Rattus norvegicus]
Length = 107
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +ESL+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 24 DAKGLSNPSEVESLREKVYATLEPYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 83
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 84 FKLIGDTPIDTFLMEML 100
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 282 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 342 FKLIGDTPIDTFLMEML 358
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + E LFF
Sbjct: 198 DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCQEHLFF 257
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 258 FKLIGDTPIDTFLMEML 274
>gi|146332495|gb|ABQ22753.1| retinoic acid receptor RXR-gamma-like protein [Callithrix jacchus]
Length = 126
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 43 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 102
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 103 FKLIGDTPIDTFLMEML 119
>gi|70799020|gb|AAZ09200.1| retinoid X receptor alpha protein [Bos taurus]
Length = 152
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +L YC+ +YP QP RF KLLLRLP+LR+V + +E LFF
Sbjct: 69 DSKGLSNPAEVEALREKVYASLGAYCKHKYPEQPGRFAKLLLRLPALRSVGLKCLEHLFF 128
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 129 FKLIGDTPIDTFLMEML 145
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL + +E+L+EK ALEE+CR QYP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 318 EAKGLRSTAQVEALREKVYAALEEHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 377
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ + ML
Sbjct: 378 FKLIGDTPIDNFLLSML 394
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ + +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 388 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 448 FKLIGDTPIDTFLMEML 464
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 166 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 225
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 226 FKLIGDTPIDTFLMEML 242
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ + +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 387 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 447 FKLIGDTPIDTFLMEML 463
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA L+ V +E L+EK +LEEYCR QY +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 397 DAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFF 456
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 457 FKLIGDTPIDTFLMEML 473
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA L+ V +E L+EK +LEEYCR QY +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 399 DAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFF 458
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 459 FKLIGDTPIDTFLMEML 475
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ + +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 385 DAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 445 FKLIGDTPIDTFLMEML 461
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 387 DAKGLSNPSEVEALREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 447 FKLIGDTPIDTFLMEML 463
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +ESL+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 385 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 445 FKLIGDTPIDTFLMEML 461
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ + +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 369 DAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 429 FKLIGDTPIDTFLMEML 445
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 370 DAKGLSNPSEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 430 FKLIGDTPIDTFLMEML 446
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 372 DAKGLSNPSEVEALREKVYASLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 431
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 432 FKLIGDTPIDTFLMEML 448
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +ESL+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 385 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 445 FKLIGDTPIDTFLMEML 461
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 405 DSKGLSNPLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 464
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 465 FKLIGDTPIDTFLMEML 481
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +ESL+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +ESL+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 406 DAKGLSNPSEVEALREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 465
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 466 FKLIGDTPIDTFLMEML 482
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 331 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 390
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 391 FKLIGDTPIDTFLMEML 407
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 364 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 423
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 424 FKLIGDTPIDTFLMEML 440
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 364 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 423
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 424 FKLIGDTPIDTFLMEML 440
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK +LE Y + YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 358 DAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 418 FKLIGDTPIDTFLMEML 434
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK +LE Y + YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 358 DAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 418 FKLIGDTPIDTFLMEML 434
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 360 DAKGLSNTSEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 419
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 420 FKLIGDTPIDTFLMEML 436
>gi|355717628|gb|AES06000.1| retinoid X receptor, beta [Mustela putorius furo]
Length = 159
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 76 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 135
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 136 FKLIGDTPIDTFLMEML 152
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL V+H+E+L+E+ ALE+YCR Y QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 329 EAKGLKSVTHVENLRERVYSALEDYCRQNYFDQPGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ + ML
Sbjct: 389 FKLIGDTPIDNFLMSML 405
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 324 DAKGLSNPSEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 383
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 384 FKLIGDTPIDTFLMEML 400
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 348 DAKGLSNPSEVETLREKVYATLEXYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 407
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 408 FKLIGDTPIDTFLMEML 424
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 390 DAKGLSNPSEVEGLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 449
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 450 FKLIGDTPIDTFLMEML 466
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL +ESL+EK LEEYC+ QYP + RF KLLLRLP+LR++ + +E LFF
Sbjct: 209 DAKGLVSTQEVESLREKVYATLEEYCKCQYPEETGRFAKLLLRLPALRSIGLKCLEHLFF 268
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 269 FKLIGDTPIDTFLMEML 285
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 342 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 401
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 402 FKLIGDTPIDTFLMEML 418
>gi|35311|emb|CAA46456.1| MHC class I promoter binding protein [Homo sapiens]
Length = 231
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 148 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 207
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 208 FKLIGDTPIDTFLMEML 224
>gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 153 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 213 FKLIGDTPIDTFLMEML 229
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 257 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 316
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 317 FKLIGDTPIDTFLMEML 333
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLP 46
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLP
Sbjct: 239 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLP 283
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 257 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 316
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 317 FKLIGDTPIDTFLMEML 333
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 361 DAKGLSNTSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 420
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 421 FKLIGDTPIDTFLMEML 437
>gi|262263189|dbj|BAI48097.1| retinoid X receptor, beta [Sus scrofa]
Length = 106
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 23 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 82
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 83 FKLIGDTPIDTFLMEML 99
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL + +E+L+EK ALE++CR QYP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 351 EAKGLRSTAQVEALREKVYAALEDHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 410
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ + ML
Sbjct: 411 FKLIGDTPIDNFLITML 427
>gi|74209898|dbj|BAE21258.1| unnamed protein product [Mus musculus]
Length = 115
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 32 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 91
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI++ + +ML
Sbjct: 92 FKLIGDTPIDSFLMEML 108
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D IE+LQ++SQ L ++ R QYP+QP+RFGKLLL PSLR +SS+ IE LFF R
Sbjct: 329 GLKDPEQIENLQDQSQMMLAQHTRNQYPAQPVRFGKLLLLSPSLRFISSERIELLFFHRT 388
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 389 IGNTPMEKLLCDMF 402
>gi|290760683|gb|ADD59926.1| retinoid X receptor alpha, partial [Orcinus orca]
Length = 130
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 55/73 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 58 DSKGLSNPAEVETLREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 117
Query: 62 VRLVGKTPIETLI 74
+L+G TPI+T +
Sbjct: 118 FKLIGDTPIDTFL 130
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 379 DAKGLSNPQEVEGLREKVYASLESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 439 FKLIGDTPIDTFLMEML 455
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI++ + +ML
Sbjct: 440 FKLIGDTPIDSFLMEML 456
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI++ + +ML
Sbjct: 440 FKLIGDTPIDSFLMEML 456
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL +E L+EK ALEE+C+ +P QP RFGKLLLRLP+LR++ + +E LFF
Sbjct: 366 DAKGLKSTERVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 425
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ ++++L
Sbjct: 426 FKLIGDTPIDVFLQNVL 442
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL +E L+EK ALEE+C+ +P QP RFGKLLLRLP+LR++ + +E LFF
Sbjct: 325 DAKGLKSTERVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 384
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ ++++L
Sbjct: 385 FKLIGDTPIDVFLQNVL 401
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL +E L+EK ALEE+C+ +P QP RFGKLLLRLP+LR++ + +E LFF
Sbjct: 338 DAKGLKSTERVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 397
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ ++++L
Sbjct: 398 FKLIGDTPIDVFLQNVL 414
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ + +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 387 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ + +ML
Sbjct: 447 FKLIGDTPIDIFLMEML 463
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ V +E L+EK +LEEY +++YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 147 DAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 206
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 207 FKLIGDQPIDTFLMEML 223
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 487 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLXLPSLRFITAERIELLFFRKT 546
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 547 IGNTPMEKLLCDMF 560
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 491 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 550
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 551 FKLIGDTPIDTFLMEML 567
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 370 DAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 430 FKLIGDTPIDTFLMEML 446
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ V +E L+EK +LEEY +T+YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 413 FKLIGDQPIDTFLMEML 429
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 392 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 451
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 452 FKLIGDTPIDTFLMEML 468
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 399 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 458
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 459 FKLIGDTPIDTFLMEML 475
>gi|224473826|gb|ACN49167.1| retinoid X receptor beta [Oryzias dancena]
Length = 111
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 28 DAKGLSNSSEVELLRERVYASLEAYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 87
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 88 FKLIGDTPIDTFLMEML 104
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 331 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 390
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 391 FKLIGDTPIDTFLMEML 407
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 343 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 402
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 403 FKLIGDTPIDTFLMEML 419
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL VS +E+L+EK LEEY RT Y +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 318 DPKGLKSVSQVEALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFF 377
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPIE+ + +ML
Sbjct: 378 FKLIGDTPIESFLLEML 394
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 395 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 454
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 455 FKLIGDTPIDTFLMEML 471
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 329 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 389 FKLIGDTPIDTFLMEML 405
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 264 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 323
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 324 FKLIGDTPIDTFLMEML 340
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 375 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 435 FKLIGDTPIDTFLMEML 451
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 325 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 384
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 385 FKLIGDTPIDTFLMEML 401
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 351 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 410
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 411 FKLIGDTPIDTFLMEML 427
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 290 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 349
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 350 FKLIGDTPIDTFLMEML 366
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 453 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 512
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 513 FKLIGDTPIDTFLMEML 529
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 395 DAKGLSSPCDVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 454
Query: 62 VRLVGKTPIETLIRDML 78
+L+ TPI+T + +ML
Sbjct: 455 FKLISDTPIDTFLMEML 471
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 448 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 507
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 508 FKLIGDTPIDTFLMEML 524
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 381 DAKGLSSPCDVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 440
Query: 62 VRLVGKTPIETLIRDML 78
+L+ TPI+T + +ML
Sbjct: 441 FKLISDTPIDTFLMEML 457
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 437 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 496
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 497 FKLIGDTPIDTFLMEML 513
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 448 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 507
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 508 FKLIGDTPIDTFLMEML 524
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 510 FKLIGDTPIDTFLMEML 526
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 454 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 513
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 514 FKLIGDTPIDTFLMEML 530
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 494 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 553
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 554 FKLIGDTPIDTFLMEML 570
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E+L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 369 DAKGLSNSLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 429 FKLIGDTPIDTFLMEML 445
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 453 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 512
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 513 FKLIGDTPIDTFLMEML 529
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 435 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 494
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 495 FKLIGDTPIDTFLMEML 511
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 510 FKLIGDTPIDTFLMEML 526
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 454 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 513
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 514 FKLIGDTPIDTFLMEML 530
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 442 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 501
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 502 FKLIGDTPIDTFLMEML 518
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 510 FKLIGDTPIDTFLMEML 526
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 451 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 510
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 511 FKLIGDTPIDTFLMEML 527
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 510 FKLIGDTPIDTFLMEML 526
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 510 FKLIGDTPIDTFLMEML 526
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 422 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 481
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 482 FKLIGDTPIDTFLMEML 498
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK L Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLGAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|24210302|emb|CAD54660.1| retinoid x receptor, beta [Danio rerio]
Length = 129
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 46 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 105
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 106 FKLIGDTPIDTFLMEML 122
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 509 FKLIGDTPIDTFLMEML 525
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 394 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 453
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 454 FKLIGDTPIDTFLMEML 470
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 257 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 316
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI++ + +ML
Sbjct: 317 FKLIGDTPIDSFLMEML 333
>gi|344252996|gb|EGW09100.1| Retinoic acid receptor RXR-beta [Cricetulus griseus]
Length = 101
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 18 DAKGLSNPGEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 77
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 78 FKLIGDTPIDTFLMEML 94
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 321 DAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 380
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 381 FKLIGDTPIDTFLMEML 397
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 287 DAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 346
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 347 FKLIGDTPIDTFLMEML 363
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 287 DAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 346
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 347 FKLIGDTPIDTFLMEML 363
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 366 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 425
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 426 FKLIGDTPIDTFLMEML 442
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 329 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 389 FKLIGDTPIDTFLMEML 405
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 329 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 389 FKLIGDTPIDTFLMEML 405
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 345 DAKGLSSSSEVELLREKVYASLESYCKHRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 404
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 405 FKLIGDTPIDTFLMEML 421
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 56/79 (70%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 342 DAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 401
Query: 62 VRLVGKTPIETLIRDMLLS 80
+L+G TPI+T + +ML S
Sbjct: 402 FKLIGNTPIDTFLMEMLES 420
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 344 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 403
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 404 FKLIGDTPIDTFLMEML 420
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E+L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 376 DAKGLSSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 435
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 436 FKLIGDTPIDTFLMEML 452
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 56/79 (70%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 342 DAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 401
Query: 62 VRLVGKTPIETLIRDMLLS 80
+L+G TPI+T + +ML S
Sbjct: 402 FKLIGNTPIDTFLMEMLES 420
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 366 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 425
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 426 FKLIGDTPIDTFLMEML 442
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 382 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 441
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 442 FKLIGDTPIDTFLMEML 458
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 344 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 403
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 404 FKLIGDTPIDTFLMEML 420
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 375 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 435 FKLIGDTPIDTFLMEML 451
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 334 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 393
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 394 FKLIGDTPIDTFLMEML 410
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 379 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 439 FKLIGDTPIDTFLMEML 455
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 362 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 421
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 422 FKLIGDTPIDTFLMEML 438
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 375 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 435 FKLIGDTPIDTFLMEML 451
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E+L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 315 DAKGLSSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 374
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 375 FKLIGDTPIDTFLMEML 391
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 334 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 393
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 394 FKLIGDTPIDTFLMEML 410
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 404 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 463
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 464 FKLIGDTPIDTFLMEML 480
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 347 DAKGLSSPSEVELLREKVYASLESYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 407 FKLIGDTPIDTFLMEML 423
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 388 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 448 FKLIGDTPIDTFLMEML 464
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ V +E L+EK +LEEY +++YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 413 FKLIGDQPIDTFLMEML 429
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 355 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 414
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 415 FKLIGDTPIDTFLMEML 431
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 334 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 393
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 394 FKLIGDTPIDTFLMEML 410
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA L+D ++IE+L+EK +LE YC+++YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 402 DAKDLTDPAYIETLREKVYASLEVYCKSKYPDQAGRFAKLLLRLPALRSIGLKCLEHLFF 461
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+ + D L
Sbjct: 462 FKLIGNTPIDQFLMDKL 478
>gi|354487523|ref|XP_003505922.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cricetulus
griseus]
Length = 546
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 463 DAKGLSNPGEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 522
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 523 FKLIGDTPIDTFLMEML 539
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 369 DAKGLSNPGDVEVLREKVYACLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 429 FKLIGDTPIDTFLMEML 445
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 441 DAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 500
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 501 FKLIGDTPIDTFLMEML 517
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 375 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 435 FKLIGDTPIDTFLMEML 451
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 368 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 428 FKLIGDTPIDTFLMEML 444
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 372 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 431
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 432 FKLIGDTPIDTFLMEML 448
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 327 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 386
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 387 FKLIGDTPIDTFLMEML 403
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 402 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 461
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 462 FKLIGDTPIDTFLMEML 478
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 514 DAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 573
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 574 FKLIGDTPIDTFLMEML 590
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 331 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 390
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 391 FKLIGDTPIDTFLMEML 407
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 365 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 424
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 425 FKLIGDTPIDTFLMEML 441
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 435 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 494
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 495 FKLIGDTPIDTFLMEML 511
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 363 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 422
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 423 FKLIGDTPIDTFLMEML 439
>gi|327290672|ref|XP_003230046.1| PREDICTED: retinoic acid receptor RXR-beta-like, partial [Anolis
carolinensis]
Length = 388
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 305 DAKGLSNPGEVELLREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 364
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 365 FKLIGDTPIDTFLMEML 381
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E+L+EK +LE Y + +YP QP RF KL+ RLP+LR++ + +E LFF
Sbjct: 370 DAKGLSNPPEVEALREKVYASLESYTKQKYPDQPGRFAKLVFRLPALRSIGLKCLEHLFF 429
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 430 FKLIGDTPIDTFLMEML 446
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT +P +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 321 DVRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
RL+G PI+T + +ML S S
Sbjct: 381 FRLIGDAPIDTFLMEMLESPSD 402
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 441 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 500
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 501 FKLIGDTPIDTFLMEML 517
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT +P +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 321 DVRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
RL+G PI+T + +ML S S
Sbjct: 381 FRLIGDAPIDTFLMEMLESPSD 402
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 437 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 496
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 497 FKLIGDTPIDTFLMEML 513
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT +P +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 321 DVRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
RL+G PI+T + +ML S S
Sbjct: 381 FRLIGDAPIDTFLMEMLESPSD 402
>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 152 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 62 VRLVGKTPIETLI 74
+L+G TPI+T +
Sbjct: 212 FKLIGDTPIDTFL 224
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL + +E+L+E+ ALE++CR QYP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 371 EARGLRCSAQVEALRERVYAALEDHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 430
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G TPI+ + ML + S
Sbjct: 431 FKLIGDTPIDNFLLSMLEAPSD 452
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT +P +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 276 DVRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 335
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
RL+G PI+T + +ML S S
Sbjct: 336 FRLIGDAPIDTFLMEMLESPSD 357
>gi|156394045|ref|XP_001636637.1| predicted protein [Nematostella vectensis]
gi|156223742|gb|EDO44574.1| predicted protein [Nematostella vectensis]
Length = 196
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L+D I+++Q K+Q ALEEY R YP P RFG++LLRL +L V ++IE +FF
Sbjct: 112 DTEQLADAVQIQAVQNKTQNALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIEHVFF 171
Query: 62 VRLVGKTPIETLIRDMLLS 80
+L+G T I TL+ D+LLS
Sbjct: 172 NKLLGSTSIYTLVDDILLS 190
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 313 DARGLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFL 372
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
+L+G TP++ + ML+ + S P
Sbjct: 373 FKLIGDTPLDNYLMKMLVDSPNNSSP 398
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 318 DARGLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFL 377
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
+L+G TP++ + ML+ + S P
Sbjct: 378 FKLIGDTPLDNYLMKMLVDSPNNSSP 403
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 312 DARGLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFL 371
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
+L+G TP++ + ML+ + S P
Sbjct: 372 FKLIGDTPLDNYLMKMLVDSPNNSSP 397
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+ R++ + +E LFF
Sbjct: 264 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAPRSIGLKCLEHLFF 323
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 324 FKLIGDTPIDTFLMEML 340
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 121 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 180
Query: 62 VRLVGKTPIETLI 74
+L+G TPI+T +
Sbjct: 181 FKLIGDTPIDTFL 193
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L +Y R +YP QP RFG+LLL LP+LR++ +EQLFF
Sbjct: 359 ETAGLCDVQPVEMLQDQAQCILGDYIRNRYPRQPTRFGRLLLILPNLRSIRQLTVEQLFF 418
Query: 62 VRLVGKTPIETLIRDM 77
+G+ PI+ L+ DM
Sbjct: 419 KETIGEIPIQRLLGDM 434
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ V+ +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 376 DAKGLNCVNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 435
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L+G TP+++ + ML+ + S
Sbjct: 436 FKLIGDTPLDSYLMKMLVDNPNTS 459
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 153 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 213 FKLIGDVPIDTFLMEML 229
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL +E+L+EK LEEYCR YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 169 EAKGLKSTQQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFF 228
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+LVG T I++ + ML S S
Sbjct: 229 FKLVGNTSIDSFLLSMLESNSD 250
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL +E+L+EK LEEYCR YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 180 EAKGLKSTQQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFF 239
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+LVG T I++ + ML S S
Sbjct: 240 FKLVGNTSIDSFLLSMLESNSD 261
>gi|426225979|ref|XP_004007135.1| PREDICTED: uncharacterized protein LOC101108039 [Ovis aries]
Length = 873
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 53/73 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 505 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 564
Query: 62 VRLVGKTPIETLI 74
L+G PI+T +
Sbjct: 565 FHLIGVPPIDTFL 577
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 52/76 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L +Y RT+YP QP RFG+LLL +PSLR + S +E LFF
Sbjct: 397 ETAGLCDVQPVEMLQDQAQCILGDYVRTRYPRQPTRFGRLLLLVPSLRAIRSLTVELLFF 456
Query: 62 VRLVGKTPIETLIRDM 77
+G+ PI L+ DM
Sbjct: 457 KETIGEIPITQLLGDM 472
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 323 DAKGLTCCNDVEILREKVYAALEEYTRTSYPEEPGRFAKLLLRLPALRSIGLKCLEYLFL 382
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
+L+G TP++ + ML+ + + P
Sbjct: 383 FKLIGDTPLDNYLMKMLVDNPNNTSP 408
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L DV I +LQ+++Q L +Y ++ YP+QP RFGKLLL LP LR++S Q IE+LFF + +
Sbjct: 316 LRDVHTIVALQDQAQLTLGKYIQSSYPTQPFRFGKLLLMLPQLRSISGQTIEELFFKKTI 375
Query: 66 GKTPIETLIRDMLLS 80
G PIE L+ DM S
Sbjct: 376 GNIPIERLMVDMYKS 390
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS IE L+EK LEEY RT YP QP RF KLLLRLP+LR++ + +E LF
Sbjct: 350 DVKGLSACETIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFL 409
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
+L+G TP++ + ML+ + S P
Sbjct: 410 FKLLGDTPLDNYLMKMLMENPNSSSP 435
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS IE L+EK LEEY RT YP QP RF KLLLRLP+LR++ + +E LF
Sbjct: 355 DVKGLSACETIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFL 414
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
+L+G TP++ + ML+ + S P
Sbjct: 415 FKLLGDTPLDNYLMKMLMENPNSSSP 440
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ+++Q L +Y R QY QP+RFGK LL LPSLR++SS+ +E LFF
Sbjct: 331 GLRDAHQVETLQDQAQVMLGDYLRHQYARQPVRFGKCLLMLPSLRSISSRTLEMLFFRDT 390
Query: 65 VGKTPIETLIRDML 78
+G PIE L+ DM
Sbjct: 391 IGSIPIERLLCDMF 404
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +E L+EK ALEEY R P +P RF KLLLRLP+LR++ + +E LFF RL
Sbjct: 341 GLKSGQEVELLREKVYAALEEYTRVTRPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFRL 400
Query: 65 VGKTPIETLIRDMLLSGSS 83
+G PI+T + DML S S
Sbjct: 401 IGDIPIDTFLMDMLGSSSD 419
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS IE L+EK LEEY RT YP QP RF KLLLRLP+LR++ + +E LF
Sbjct: 355 DVKGLSACDTIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFL 414
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
+L+G TP++ + ML+ + S P
Sbjct: 415 FKLLGDTPLDNYLMKMLVENPNSSSP 440
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 222 DAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 281
Query: 62 VRLVGKTPIET 72
+L+G TPI+T
Sbjct: 282 FKLIGDTPIDT 292
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 223 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 282
Query: 62 VRLVGKTPIET 72
+L+G TPI+T
Sbjct: 283 FKLIGDTPIDT 293
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIET 72
+L+G TPI+T
Sbjct: 440 FKLIGDTPIDT 450
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 325 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 384
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 385 FKLIGDVPIDTFLMEML 401
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 325 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 384
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 385 FKLIGDVPIDTFLMEML 401
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 343 DAKGLNCCNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 402
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L+G TP+++ + ML+ + S
Sbjct: 403 FKLIGDTPLDSYLMKMLVDNPNSS 426
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 347 DAKGLNCCNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 406
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L+G TP+++ + ML+ + S
Sbjct: 407 FKLIGDTPLDSYLMKMLVDNPNSS 430
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E L+EK ALEEY RT YP +P RF KLLLRLP+LR++ + +E LF
Sbjct: 342 DAKGLNCCNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 401
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L+G TP+++ + ML+ + S
Sbjct: 402 FKLIGDTPLDSYLMKMLVDNPNSS 425
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E+LQEK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 171 DAKGLSSPSDVEALQEKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 230
Query: 62 VRLVGKT 68
+L+G T
Sbjct: 231 FKLIGDT 237
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR +SS+ +E LFF +
Sbjct: 336 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKT 395
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 396 IGNTPMEKLLCDMF 409
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR +SS+ +E LFF +
Sbjct: 352 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKT 411
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 412 IGNTPMEKLLCDMF 425
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 52/76 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +E LQ+++Q L EYCR+QYP Q +RFGKLLL LPSL+TVS ++IE LFF
Sbjct: 251 GLRAPQLVERLQDQAQSMLGEYCRSQYPDQQVRFGKLLLMLPSLKTVSPKMIEDLFFRGT 310
Query: 65 VGKTPIETLIRDMLLS 80
+ PIE ++ DM S
Sbjct: 311 LDNVPIERMLCDMFKS 326
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ IE LFF +
Sbjct: 329 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKT 388
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 389 IGNTPMEKLLCDMF 402
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ IE LFF +
Sbjct: 618 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKT 677
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 678 IGNTPMEKLLCDMF 691
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YPSQP RFGKLLL LPSLR V+S+ IE LFF R
Sbjct: 356 GLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRT 415
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 416 IGNTPMEKLLCDMF 429
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 247 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 306
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 307 IGNTPMEKLLCDMF 320
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YPSQP RFGKLLL LPSLR V+S+ IE LFF R
Sbjct: 351 GLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRT 410
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 411 IGNTPMEKLLCDMF 424
>gi|355778151|gb|EHH63187.1| hypothetical protein EGM_16101, partial [Macaca fascicularis]
Length = 302
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 227 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 286
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 287 IGNTPMEKLLCDMF 300
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 247 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 306
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 307 IGNTPMEKLLCDMF 320
>gi|121484110|gb|ABM54395.1| NR2E3 [Pan paniscus]
Length = 76
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 1 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 60
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 61 IGNTPMEKLLCDMF 74
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YPSQP RFGKLLL LPSLR V+S+ IE LFF R
Sbjct: 356 GLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRT 415
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 416 IGNTPMEKLLCDMF 429
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 247 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 306
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 307 IGNTPMEKLLCDMF 320
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ +E LFF +
Sbjct: 342 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKT 401
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 402 IGNTPMEKLLCDMF 415
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ +E LFF +
Sbjct: 336 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKT 395
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 396 IGNTPMEKLLCDMF 409
>gi|432850560|ref|XP_004066811.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Oryzias latipes]
Length = 385
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YPSQP RFGKLLL LPSLR V+S+ IE LFF R
Sbjct: 310 GLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRT 369
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 370 IGNTPMEKLLCDMF 383
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YPSQP RFGKLLL LPSLR V+S+ IE LFF R
Sbjct: 134 GLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRT 193
Query: 65 VGKTPIETLI 74
+G TP+E L+
Sbjct: 194 IGNTPMEKLL 203
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 188 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 247
Query: 62 VRLVGKTPIETLIRDML 78
+L+G T +T + +ML
Sbjct: 248 FKLIGDTRHDTFLMEML 264
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 336 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 395
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 396 IGNTPMEKLLCDMF 409
>gi|345794757|ref|XP_544754.3| PREDICTED: photoreceptor-specific nuclear receptor [Canis lupus
familiaris]
Length = 304
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ +E LFF +
Sbjct: 229 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKT 288
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 289 IGNTPMEKLLCDMF 302
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ +E LFF +
Sbjct: 441 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKT 500
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 501 IGNTPMEKLLCDMF 514
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL IESL+E+ ALEEYC+ QYP +P RF KLLLRLP+LR++ + +E LFF +L
Sbjct: 262 GLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 321
Query: 65 VGKTP 69
+G TP
Sbjct: 322 IGDTP 326
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 328 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 387
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 388 IGNTPMEKLLCDMF 401
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 320 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 379
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 380 IGNTPMEKLLCDMF 393
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + E LFF +L
Sbjct: 329 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCSEHLFFFKL 388
Query: 65 VGKTPIETLIRDMLLS 80
+G PI+T + +ML S
Sbjct: 389 IGDVPIDTFLMEMLES 404
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 327 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 386
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 387 IGNTPMEKLLCDMF 400
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 335 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 394
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 395 IGNTPMEKLLCDMF 408
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 322 GLKDPDHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 381
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 382 IGNTPMEKLLCDMF 395
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL IESL+E+ ALEEYC+ QYP +P RF KLLLRLP+LR++ + +E LFF +L
Sbjct: 256 GLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 315
Query: 65 VGKTP 69
+G TP
Sbjct: 316 IGDTP 320
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL IESL+E+ ALEEYC+ QYP +P RF KLLLRLP+LR++ + +E LFF +L
Sbjct: 241 GLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 300
Query: 65 VGKTP 69
+G TP
Sbjct: 301 IGDTP 305
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 327 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 386
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 387 IGNTPMEKLLCDMF 400
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 477 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 536
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 537 IGNTPMEKLLCDMF 550
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 373 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 432
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 433 IGNTPMEKLLCDMF 446
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 539 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 598
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 599 IGNTPMEKLLCDMF 612
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 327 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 386
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 387 IGNTPMEKLLCDMF 400
>gi|291232333|ref|XP_002736112.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 308
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
G+ D + +LQ+++Q L +Y T+YP+QP RFGKLLL LP LR + IE+LFF +
Sbjct: 230 GVRDFHGVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKT 289
Query: 65 VGKTPIETLIRDM 77
+G PIE L+ DM
Sbjct: 290 IGNIPIERLLCDM 302
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 370 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 429
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 430 IGNTPMEKLLCDMF 443
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
G+ D + +LQ+++Q L +Y T+YP+QP RFGKLLL LP LR + IE+LFF +
Sbjct: 283 GVRDFHGVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKT 342
Query: 65 VGKTPIETLIRDM 77
+G PIE L+ DM
Sbjct: 343 IGNIPIERLLCDM 355
>gi|444726663|gb|ELW67187.1| Usher syndrome type-1C protein-binding protein 1 [Tupaia chinensis]
Length = 767
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 48/87 (55%), Gaps = 38/87 (43%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q LFF
Sbjct: 715 DACGLSDPAHVESLQEKAQ--------------------------------------LFF 736
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 737 MRLVGKTPIETLIRDMLLSGSTFNWPY 763
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YP QP+RFGKLLL LP+LR +SS+ +E LFF R
Sbjct: 329 GLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRT 388
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 389 IGNTPMEKLLCDMF 402
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YP QP+RFGKLLL LP+LR +SS+ +E LFF R
Sbjct: 331 GLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRT 390
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 391 IGNTPMEKLLCDMF 404
>gi|395501668|ref|XP_003755213.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Sarcophilus harrisii]
Length = 327
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 53/74 (71%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ + YPSQP+RFGKLLL LPSLR +SS IE LFF R
Sbjct: 252 GLKDPEQVENLQDQSQVMLGQHNKMHYPSQPVRFGKLLLLLPSLRFISSDRIELLFFRRT 311
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 312 IGNTPMEKLLCDMF 325
>gi|156387775|ref|XP_001634378.1| predicted protein [Nematostella vectensis]
gi|156221460|gb|EDO42315.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D ++ +E LQ+ SQ +LE+Y R+QYPSQP RFGKLLL L SLR V S VIEQLFF
Sbjct: 252 DGSLINQPRQVEVLQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTVIEQLFF 311
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
++ + +++ ML +G+
Sbjct: 312 ADVLRGASMGEVLKKMLTTGN 332
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 293 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPMRFGKLLLLLPSLRFITAERIELLFFRKT 352
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 353 IGNTPMEKLLCDMF 366
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 302 DVRGLQSTQEVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 361
Query: 62 VRLVGKTPIETLIRDML 78
RL+G I+T I +ML
Sbjct: 362 FRLIGDVTIDTFITEML 378
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L D S +ESLQ+++Q L +Y QYPS RFGKL+L LP+L+T+S + +E+LFF + +
Sbjct: 315 LRDCSQVESLQDQAQLMLRDYIFQQYPSNKFRFGKLILLLPALKTISPRTLERLFFGKTI 374
Query: 66 GKTPIETLIRDMLLS 80
G P+E L+ DM S
Sbjct: 375 GNVPVERLLCDMFKS 389
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ + YPSQP+RFGKLLL LP+LR +SS IE LFF R
Sbjct: 330 GLKDPEQVENLQDQSQVMLGQHNKMHYPSQPVRFGKLLLLLPALRFISSDRIELLFFRRT 389
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 390 IGNTPMEKLLCDMF 403
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
+ GL D+ +LQ+++Q L Y T YP+QP+RFG+LLL LP+LRT++ IE+LFF
Sbjct: 257 SAGLRDIPSAVNLQDQAQLTLSRYVSTAYPNQPLRFGRLLLLLPALRTIAPSTIEELFFR 316
Query: 63 RLVGKTPIETLIRDMLLSG 81
+ +G PIE +I DM SG
Sbjct: 317 KTIGNIPIERIISDMYKSG 335
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 214 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 62 VRLVGKTPIET 72
+L+G PI+T
Sbjct: 274 FKLIGDVPIDT 284
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L D+ + LQ+++Q L +Y + YP+QP RFGKLLL +P+L+TV I +LFF
Sbjct: 299 DEKSLQDIHTVAGLQDQAQLTLSKYIQATYPTQPFRFGKLLLSIPTLKTVCGNTIAELFF 358
Query: 62 VRLVGKTPIETLIRDMLLS 80
+ +G PIE L+ DM S
Sbjct: 359 RKTIGNIPIERLLIDMFKS 377
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E LQ+++QC L +Y R +Y QP RFG+LLL LP+LR V IE+LFF
Sbjct: 379 GLIDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPNLRAVRQATIERLFFKET 438
Query: 65 VGKTPIETLIRDMLLSGSSFS 85
+G PI+ L+ DM S++
Sbjct: 439 IGDIPIQRLLGDMYHMEKSYA 459
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D ++E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ IE LFF +
Sbjct: 533 GLKDPENVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKT 592
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 593 IGNTPMEKLLCDMF 606
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ +E LFF +
Sbjct: 408 GLKGPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKT 467
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 468 IGNTPMEKLLCDMF 481
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 214 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 62 VRLVGKTPIET 72
+L+G PI+T
Sbjct: 274 FKLIGDVPIDT 284
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ + YPSQP+RFGKLLL LPSL+ +SS IE LFF R
Sbjct: 343 GLKDPDQVENLQDQSQVMLGQHNQIHYPSQPVRFGKLLLLLPSLKFISSDRIELLFFRRT 402
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 403 IGNTPMEKLLCDMF 416
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 213 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 272
Query: 62 VRLVGKTPIET 72
+L+G PI+T
Sbjct: 273 FKLIGDVPIDT 283
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ +E LFF +
Sbjct: 316 GLKGPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKT 375
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 376 IGNTPMEKLLCDMF 389
>gi|115679027|ref|XP_792757.2| PREDICTED: nuclear receptor subfamily 2 group E member 1-like,
partial [Strongylocentrotus purpuratus]
Length = 297
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + S + +LQ++SQ AL +Y ++ +QP RFGKLLL LPS+R + +EQ+FF
Sbjct: 215 DISGIKETSSVVTLQDQSQLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFF 274
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
+ VG TP TL+ D+ F
Sbjct: 275 WKAVGSTPFHTLLTDLYKKNEHF 297
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 214 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 62 VRLVGKTPIET 72
+L+G PI+T
Sbjct: 274 FKLIGDVPIDT 284
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL D +E LQ+++Q L E+ R+Q + PIRFG+LLL LP LR V IE +FF
Sbjct: 291 DTRGLKDPLQVEKLQDQAQLMLAEHTRSQNRNHPIRFGRLLLTLPCLRHVGPDRIETIFF 350
Query: 62 VRLVGKTPIETLIRDML 78
R +G TP+E L+ DM
Sbjct: 351 QRTIGNTPMERLLSDMF 367
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 22 ALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 78
ALEE+CR QYP QP RF KLLLRLP+LR++ + +E LFF +L+G TPI+ + ML
Sbjct: 338 ALEEHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDNFLLSML 394
>gi|195342848|ref|XP_002038010.1| GM18580 [Drosophila sechellia]
gi|194132860|gb|EDW54428.1| GM18580 [Drosophila sechellia]
Length = 196
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 111 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 170
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 171 KETIGNVPIARLLRDM 186
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 52/73 (71%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ+++Q L ++ R Q+P+QP RFG+LLL +P L+ V +Q +E +FF R
Sbjct: 392 GLKDPLQVENLQDQAQVMLGQHARGQHPTQPARFGRLLLMIPLLKHVPTQRVEHIFFQRT 451
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 452 IGNTPMEKVLCDM 464
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GLS+ +ESLQ+++Q L +Y R + SQP RFG+LLL L +LR VSS+ +E+LFF ++
Sbjct: 381 GLSEPHRVESLQDQAQVMLGDYVRYAHLSQPPRFGRLLLMLSALRAVSSKFLEKLFFKQI 440
Query: 65 VGKTPIETLIRDML 78
+G+ PIE L+ DM
Sbjct: 441 IGEIPIERLLSDMF 454
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 606 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 665
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 666 KETIGNVPIARLLRDM 681
>gi|241651520|ref|XP_002411276.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215503906|gb|EEC13400.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 370
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L +Y R ++P QP RFG+LLL LPSLR +S+ +E+LFF
Sbjct: 288 ETIGLCDVHPVEMLQDQAQCVLGDYIRHKHPRQPTRFGRLLLLLPSLRAISAATVERLFF 347
Query: 62 VRLVGKTPIETLIRDM 77
+G PIE ++ DM
Sbjct: 348 KDTIGNIPIERILGDM 363
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 645 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRASTIEALFF 704
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 705 KETIGNVPIARLLRDM 720
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 608 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 667
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 668 KETIGNVPIARLLRDM 683
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 641 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 700
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 701 KETIGNVPIARLLRDM 716
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 606 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 665
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 666 KETIGNVPIARLLRDM 681
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 651 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 710
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 711 KETIGNVPIARLLRDM 726
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 634 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 693
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 694 KETIGNVPIARLLRDM 709
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 608 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 667
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 668 KETIGNVPIARLLRDM 683
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +YP Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 616 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 675
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 676 KETIGNVPIARLLRDM 691
>gi|307194605|gb|EFN76894.1| Retinoic acid receptor RXR-alpha-A [Harpegnathos saltator]
Length = 389
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL V + L+EK ALEEY R P+ P RF KLLLRLPS+R++ + +E LFF
Sbjct: 307 DVRGLKSVQEVNLLREKIYAALEEYTRMSRPNDPGRFAKLLLRLPSIRSIGLKCLEHLFF 366
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
+++G +PI+ + +ML S S
Sbjct: 367 FKVIGDSPIDDFLMEMLESQS 387
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQ +RFGKLLL LPSLR +SS+ +E LFF +
Sbjct: 336 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKT 395
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 396 IGNTPMEKLLCDMF 409
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQ +RFGKLLL LPSLR +SS+ +E LFF +
Sbjct: 352 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKT 411
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 412 IGNTPMEKLLCDMF 425
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL D +E+LQ+++Q L ++ R +P+QP RFG+LLL LPSLR V+ IE LFF
Sbjct: 362 DTRGLKDPQQVENLQDQAQLMLGQHTRN-HPTQPTRFGRLLLMLPSLRFVTPNRIENLFF 420
Query: 62 VRLVGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 421 HHTIGNTPMERLLCDMF 437
>gi|260808486|ref|XP_002599038.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
gi|229284314|gb|EEN55050.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
Length = 198
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+D +E LQ + +L EY +YP QP+RF ++LL LP+LR++ +++ +LFF
Sbjct: 118 DVPGLADGRQVEILQNSAHQSLNEYTTARYPLQPLRFARILLGLPALRSIKPKIVTELFF 177
Query: 62 VRLVGKTPIETLIRDMLLSG 81
L+G +E ++ DMLL G
Sbjct: 178 RPLIGAIDMEVILTDMLLKG 197
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + + L+EK ALE YCR +P P RF KLLLRLP++R++ + +E LFF ++
Sbjct: 348 GLKSIQEVTLLREKIYAALEGYCRVAWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKM 407
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+ + +ML S S
Sbjct: 408 IGDVPIDDFLVEMLESRS 425
>gi|47209636|emb|CAF93476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 467
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 53/74 (71%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ Y SQP RFGKLLL LPSLR V+S+ IE LFF R
Sbjct: 392 GLKDPEQVENLQDQSQVMLGQHIRSHYSSQPARFGKLLLLLPSLRFVASERIELLFFHRT 451
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 452 IGNTPMEKLLCDMF 465
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + S + +LQ++SQ AL +Y ++ +QP RFGKLLL LPS+R + +EQ+FF
Sbjct: 328 DISGIKETSSVVTLQDQSQLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFF 387
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
+ VG TP TL+ D+ F
Sbjct: 388 WKAVGSTPFHTLLTDLYKKNEHF 410
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS S IE QEK+Q L++Y + YP + R ++LLRLP+LR +SS + E+LFF
Sbjct: 531 DHPGLSSCSQIEKFQEKAQMELQDYVQKTYPDETYRLARILLRLPALRLMSSSITEELFF 590
Query: 62 VRLVGKTPIETLI 74
L+G PI+++I
Sbjct: 591 TGLIGNVPIDSII 603
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+E+ +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 211 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 270
Query: 62 VRLVGKT 68
+L+G T
Sbjct: 271 FKLIGDT 277
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A L + +L++K ALEEYC+ YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 324 EAKHLKSTQEVTNLRDKVYTALEEYCKQMYPQQNGRFPKLLLRLPALRSIGLKCLEHLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G TPI+ + ML + S
Sbjct: 384 FKLIGNTPIDAFLISMLETRSD 405
>gi|301617695|ref|XP_002938282.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Xenopus
(Silurana) tropicalis]
Length = 509
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D GLS + IE QEK+Q L++Y + YP R ++L+RLP+LR +SS + E+LF
Sbjct: 416 IDHPGLSSTAQIEKFQEKAQMELQDYVQKTYPDDTYRLARILVRLPALRLMSSNITEELF 475
Query: 61 FVRLVGKTPIETLI 74
F L+G PI+++I
Sbjct: 476 FTGLIGNVPIDSII 489
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+ Q+++Q + ++ R+ YP+Q IRFG+LLL +PSL+ V S +E++FF R
Sbjct: 363 GLKDPLQVENFQDQAQMMMSQHVRSNYPTQHIRFGRLLLMIPSLKFVPSDRVEKIFFGRT 422
Query: 65 VGKTPIETLIRDML 78
+G P+E L+ DM
Sbjct: 423 IGSVPMEKLLCDMF 436
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL IESL+E+ LEEYC+ YP +P RF KLLLRLP+LR++ + +E LFF +L
Sbjct: 242 GLRSSQVIESLRERVYATLEEYCKQHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 301
Query: 65 VGKT 68
+G T
Sbjct: 302 IGDT 305
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L D++ + ++Q+ +Q L +Y +P+QP RFGKLLL LPSLR+VS+ IE+LFF R +
Sbjct: 327 LHDLAEVAAVQDHTQLTLNKYISAAHPTQPFRFGKLLLLLPSLRSVSNNTIEELFFRRTI 386
Query: 66 GKTPIETLIRDM 77
G PIE +I DM
Sbjct: 387 GNIPIERIICDM 398
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
L D +E+LQ++SQ L ++ + YP+Q RFG+L+L LPSLR V+S+ I +LFF R
Sbjct: 346 NLKDPEQVENLQDQSQVLLGQHIHSVYPNQGARFGRLILLLPSLRFVNSEKIAKLFFQRT 405
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 406 IGSTPMEKLLCDMF 419
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + +E LQ+++Q L +Y ++ P P RFGKLLL L SLRT S++IE+LFF +
Sbjct: 332 GLGNTQQVEFLQDQAQLILAQYVNSKTPQNPARFGKLLLTLASLRTYKSEIIEELFFRKT 391
Query: 65 VGKTPIETLI 74
+GK PIE +
Sbjct: 392 IGKVPIEAIF 401
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL ++ L+EK AL+EY R P +P RF KLLLRLP+LR++ + E LFF RL
Sbjct: 335 GLKAHQEVDMLREKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRL 394
Query: 65 VGKTPIETLIRDML 78
+G P+ L+ DML
Sbjct: 395 LGDLPLNELLTDML 408
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL ++ L+EK AL+EY R P +P RF KLLLRLP+LR++ + E LFF RL
Sbjct: 321 GLKAHQEVDMLREKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRL 380
Query: 65 VGKTPIETLIRDML 78
+G P+ L+ DML
Sbjct: 381 LGDLPLNELLTDML 394
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ T YPSQ RFG+LLL LPSL VSS+ IE LFF R
Sbjct: 344 GLKDPEQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRT 403
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 404 IGNTPMEKLLCDMF 417
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ T YPSQ RFG+LLL LPSL VSS+ IE LFF R
Sbjct: 273 GLKDPEQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRT 332
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 333 IGNTPMEKLLCDMF 346
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ T YPSQ RFG+LLL LPSL VSS+ IE LFF R
Sbjct: 269 GLKDPEQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRT 328
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 329 IGNTPMEKLLCDMF 342
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A L D +E+LQ++SQ L ++ + YP+Q RFG++LL LPSL VSS I QLFF
Sbjct: 338 EARSLKDPEQVENLQDQSQVLLGQHIYSAYPNQSTRFGRMLLLLPSLHFVSSAKIGQLFF 397
Query: 62 VRLVGKTPIETLIRDML 78
R +G TP+E L+ DM
Sbjct: 398 QRTIGNTPMEKLLCDMF 414
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL L SLR ++S+ +E LFF +
Sbjct: 405 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLSSLRFITSERVELLFFRKT 464
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 465 IGNTPMEKLLCDMF 478
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 60/80 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+LQ+++Q ALE+Y RTQYP+Q RFGKLLLRLP+LR + +E LFF
Sbjct: 283 DSQGLSEPAQVENLQDRTQSALEDYIRTQYPNQTTRFGKLLLRLPALRLLRPVSVENLFF 342
Query: 62 VRLVGKTPIETLIRDMLLSG 81
RL +++L+ DMLLSG
Sbjct: 343 SRLSMGNTVDSLLNDMLLSG 362
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 53/77 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ + +E+ +E LE++ + ++P QP RF K++LR+P+L+++ Q +E L+F
Sbjct: 354 DAKGLTAIDQVENYRELYTSTLEDHVKRKHPEQPDRFTKVILRIPALKSIGLQALEHLYF 413
Query: 62 VRLVGKTPIETLIRDML 78
+L+G P++T + DML
Sbjct: 414 FKLIGDVPMDTFLLDML 430
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL ++ +E+LQ+++Q L EY ++PSQ +RFG+LLL LP+L+ VS++ IE++FF R
Sbjct: 329 GLREMVQVETLQDQAQLMLGEYTHARFPSQRVRFGRLLLLLPALKAVSARAIEEIFFRRT 388
Query: 65 VGKTPIETLIRDMLLS 80
+G PIE L+ DM S
Sbjct: 389 IGSIPIERLLCDMFKS 404
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +Y Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 732 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFF 791
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 792 KETIGNVPIARLLRDM 807
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 12 IESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIE 71
+E L+EK ALEEY RT YP +P RF KLLLRLP+L ++ + +E LF +L+G TP++
Sbjct: 284 VEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALMSIGLKCLEYLFLFKLIGDTPLD 343
Query: 72 TLIRDMLLSGSSFS 85
+ + ML+ + S
Sbjct: 344 SYLMKMLVDNPNSS 357
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +Y Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 604 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFF 663
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 664 KETIGNVPIARLLRDM 679
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL++ + IE QEK+Q L++Y + YP R ++L+RLP+LR +SS + E+LFF
Sbjct: 537 DHPGLTNSNQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFF 596
Query: 62 VRLVGKTPIETLI 74
L+G PI+++I
Sbjct: 597 TGLIGNVPIDSII 609
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL DV +E LQ+++QC L ++ R +Y Q RFG+LLL LPSLRT+ + IE LFF
Sbjct: 603 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFF 662
Query: 62 VRLVGKTPIETLIRDM 77
+G PI L+RDM
Sbjct: 663 KETIGNVPIARLLRDM 678
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L D + LQ+++Q L +Y + YPSQP RFGKLLL LP L+TVSS+VIE +FF R +
Sbjct: 311 LRDSHAVALLQDQAQVTLSKYIESTYPSQPFRFGKLLLLLPLLQTVSSKVIEDIFFKRTI 370
Query: 66 GKTPIETLIRDMLLSG 81
G PI+ LI DM SG
Sbjct: 371 GHVPIDKLIVDMFKSG 386
>gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa domesticus]
Length = 187
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 124 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 183
Query: 62 VRLV 65
+L+
Sbjct: 184 FKLI 187
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
>gi|357622948|gb|EHJ74290.1| putative Orphan nuclear receptor NR6A1 [Danaus plexippus]
Length = 307
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS+ +E LQ+++QC L +Y RT+Y QP RFG+LLL LPSLR V ++ IE L F
Sbjct: 211 DTPGLSETQPVEMLQDQAQCILADYVRTRYTRQPTRFGRLLLLLPSLRAVRARSIESLLF 270
Query: 62 VRLVGKTPIETLIRDM 77
VG + TL+ DM
Sbjct: 271 RETVGDVSVATLLHDM 286
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LPSLR+VS IE++FF + +G
Sbjct: 318 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLRSVSPSTIEEVFFKKTIGN 377
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 378 VPITRLLSDMYKS 390
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ + IE QEK+Q L++Y + YP R ++L+RLP+LR +SS + E+LFF
Sbjct: 537 DHPGLNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFF 596
Query: 62 VRLVGKTPIETLI 74
L+G PI+++I
Sbjct: 597 TGLIGNVPIDSII 609
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ + IE QEK+Q L++Y + YP R ++L+RLP+LR +SS + E+LFF
Sbjct: 500 DHPGLNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFF 559
Query: 62 VRLVGKTPIETLI 74
L+G PI+++I
Sbjct: 560 TGLIGNVPIDSII 572
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ + IE QEK+Q L++Y + YP R ++L+RLP+LR +SS + E+LFF
Sbjct: 537 DHPGLTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFF 596
Query: 62 VRLVGKTPIETLI 74
L+G PI+++I
Sbjct: 597 TGLIGNVPIDSII 609
>gi|196015032|ref|XP_002117374.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
gi|190580127|gb|EDV20213.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
Length = 222
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ L+DVS +ES+Q AL+ Y YP QP+RF +LL+ LP L+ +SS+ IE+LF
Sbjct: 144 DSRNLTDVSRVESVQGTLYLALQRYTLLNYPEQPLRFAQLLMTLPELKAISSRGIEKLFS 203
Query: 62 VRLVGKTPIETLIRDML 78
+++ G+ P+ L+ +ML
Sbjct: 204 IKVAGEVPMYNLLLEML 220
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ + IE QEK+Q L++Y + YP R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G PI+++I
Sbjct: 564 TGLIGNVPIDSII 576
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + + L+EK ALE YCR +P RF KLLLRLP++R++ + +E LFF ++
Sbjct: 348 GLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKM 407
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+ + +ML S S
Sbjct: 408 IGDVPIDDFLVEMLESRS 425
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + + L+EK ALE YCR +P RF KLLLRLP++R++ + +E LFF ++
Sbjct: 348 GLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKM 407
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+ + +ML S S
Sbjct: 408 IGDVPIDDFLVEMLESRS 425
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + + L+EK ALE YCR +P RF KLLLRLP++R++ + +E LFF ++
Sbjct: 348 GLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKM 407
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+ + +ML S S
Sbjct: 408 IGDVPIDDFLVEMLESRS 425
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+VS IE++FF + +G
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIGN 380
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 381 VPITRLLSDMYKS 393
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+VS IE++FF + +G
Sbjct: 310 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|60892874|gb|AAX37292.1| nuclear receptor usp/RXR [Polistes fuscatus]
Length = 279
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + + L+EK ALEEY R P+ RF KLLLRLPS+R++ + +E LFF
Sbjct: 197 DVRGLKSMQEVSLLREKIYAALEEYTRVSCPNDSGRFAKLLLRLPSIRSIGLKCLEHLFF 256
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G PI+ I ++L + S
Sbjct: 257 YKLIGDVPIDEFIMELLEASSD 278
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + + L+EK ALE YCR +P RF KLLLRLP++R++ + +E LFF ++
Sbjct: 326 GLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKM 385
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+ + +ML S S
Sbjct: 386 IGDVPIDDFLVEMLESRS 403
>gi|347967177|ref|XP_320944.5| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|347967179|ref|XP_003436029.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|347967181|ref|XP_003436030.1| AGAP002095-PD [Anopheles gambiae str. PEST]
gi|333469722|gb|EAA01003.6| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|333469723|gb|EGK97383.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|333469725|gb|EGK97385.1| AGAP002095-PD [Anopheles gambiae str. PEST]
Length = 515
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL I+ ++EK L+EYC+TQ+PS+ RF +LLLRLP+LR++S + I+ L F
Sbjct: 435 DIRGLKCRKEIDQMREKIYACLDEYCKTQHPSEDGRFAQLLLRLPALRSISLKCIDHLNF 494
Query: 62 VRLVGKTPIETLIRDML 78
+RL+G ++ I +ML
Sbjct: 495 LRLLGDKQLDNFIIEML 511
>gi|347967175|ref|XP_003436028.1| AGAP002095-PC [Anopheles gambiae str. PEST]
gi|333469724|gb|EGK97384.1| AGAP002095-PC [Anopheles gambiae str. PEST]
Length = 484
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL I+ ++EK L+EYC+TQ+PS+ RF +LLLRLP+LR++S + I+ L F
Sbjct: 404 DIRGLKCRKEIDQMREKIYACLDEYCKTQHPSEDGRFAQLLLRLPALRSISLKCIDHLNF 463
Query: 62 VRLVGKTPIETLIRDML 78
+RL+G ++ I +ML
Sbjct: 464 LRLLGDKQLDNFIIEML 480
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+VS IE++FF + +G
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIGN 380
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 381 VPITRLLSDMYKS 393
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + + L+EK ALE YCR +P RF KLLLRLP++R++ + +E LFF ++
Sbjct: 348 GLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKM 407
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+ + +ML S S
Sbjct: 408 IGDVPIDDFLVEMLESRS 425
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + + L+EK ALE YCR +P RF KLLLRLP++R++ + +E LFF ++
Sbjct: 361 GLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKM 420
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+ + +ML S S
Sbjct: 421 IGDVPIDDFLVEMLESRS 438
>gi|120974938|gb|ABM46767.1| NR2E1 [Gorilla gorilla]
Length = 88
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 13 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 72
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 73 VPITRLLSDMYKS 85
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +E L+EK ALEEY RT +P +P RF KLL LPSLR++S + +E LFF L
Sbjct: 334 GLKSRQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSL 393
Query: 65 VGKTPI-ETLIRDMLLSGSS 83
+G PI E + +ML + SS
Sbjct: 394 IGNVPIDEFFLMEMLEAPSS 413
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +E L+EK ALEEY RT +P +P RF KLL LPSLR++S + +E LFF L
Sbjct: 359 GLKSRQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSL 418
Query: 65 VGKTPI-ETLIRDMLLSGSS 83
+G PI E + +ML + SS
Sbjct: 419 IGNVPIDEFFLMEMLEAPSS 438
>gi|74187239|dbj|BAE22615.1| unnamed protein product [Mus musculus]
Length = 173
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 98 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 157
Query: 68 TPIETLIRDM 77
PI L+ DM
Sbjct: 158 VPITRLLSDM 167
>gi|444709054|gb|ELW50086.1| Nuclear receptor subfamily 2 group E member 1 [Tupaia chinensis]
Length = 441
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 366 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 425
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 426 VPITRLLSDMYKS 438
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++S+ IE +FF +
Sbjct: 528 GLKDPEHVEALQDQSQMMLSQHTKAHHPSQPMRFGKLLLLLPSLRFLTSERIEHVFFCKT 587
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 588 IGNTPMEKLLCDMF 601
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 311 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 370
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 371 VPITRLLSDMYKS 383
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 301 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 360
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 361 VPITRLLSDMYKS 373
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 305 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 364
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 365 VPITRLLSDMYKS 377
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 347 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 406
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 407 VPITRLLSDMYKS 419
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G PI+++I
Sbjct: 564 TGLIGNVPIDSII 576
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 333 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 392
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 393 VPITRLLSDMYKS 405
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 307 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 366
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 367 VPITRLLSDMYKS 379
>gi|14624971|gb|AAG01569.1| ultraspiracle protein [Lucilia cuprina]
Length = 467
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + +E +EK L+E+CRT++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 386 DIRGLKCRADVEVCREKIYACLDEHCRTEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 445
Query: 62 VRLVGKTPIETLIRDML 78
RL+G+ +E LI + L
Sbjct: 446 FRLIGERALEELIAEQL 462
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+V IE++FF + +G
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVGPSTIEEVFFKKTIGN 380
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 381 VPITRLLSDMYKS 393
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 347 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 406
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 407 VPITRLLSDMYKS 419
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L D +E L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E +F
Sbjct: 344 DVKQLQDPILVEDLREKVYATLEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFL 403
Query: 62 VRLVGKTPIETLIRD 76
+ VG TP L+RD
Sbjct: 404 FKTVGDTPQIELVRD 418
>gi|326926346|ref|XP_003209363.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor-like [Meleagris gallopavo]
Length = 395
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YP QP+RFGKLLL LP+LR +SS+ +E LFF R
Sbjct: 320 GLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRT 379
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 380 IGNTPMEKLLCDMF 393
>gi|148694040|gb|EDL25987.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
gi|148694041|gb|EDL25988.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
Length = 322
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 247 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKT 306
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 307 IGNTPMEKLLCDMF 320
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LPSL ++S IE++FF + +G
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGN 380
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 381 VPITRLLSDMYKS 393
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 443 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 502
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 503 VPITRLLSDMYKS 515
>gi|326916109|ref|XP_003204353.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Meleagris gallopavo]
Length = 339
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 264 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 323
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 324 VPITRLLSDMYKS 336
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LPSL ++S IE++FF + +G
Sbjct: 310 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 320 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKT 379
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 380 IGNTPMEKLLCDMF 393
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus griseus]
Length = 323
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 248 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 307
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 308 VPITRLLSDMYKS 320
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++ IE++FF + +
Sbjct: 260 FGNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSIGPSTIEEVFFKKTI 319
Query: 66 GKTPIETLIRDMLLS 80
G PI L+ DM S
Sbjct: 320 GNVPITRLLSDMYKS 334
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 321 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 380
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 381 VPITRLLSDMYKS 393
>gi|291222082|ref|XP_002731047.1| PREDICTED: hepatocyte nuclear factor 4, alpha-like [Saccoglossus
kowalevskii]
Length = 454
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+SL+ ++Q LE+Y QY S+ RFG++LL LPSL++++ +IEQ+
Sbjct: 249 DAKGLSDSMKIKSLRYQAQINLEDYINDRQYDSRG-RFGEILLVLPSLQSITWHMIEQVQ 307
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F +L G T I+ L+++MLL G+S
Sbjct: 308 FAKLFGVTKIDNLLQEMLLGGTS 330
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +E L+EK ALEEY RT +P +P RF KLL LPSLR++S + +E LFF L
Sbjct: 344 GLKSRQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSL 403
Query: 65 VGKTPIETLI 74
+G PI+
Sbjct: 404 IGNVPIDEFF 413
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + +E +Q+K+ CAL+ Y ++P+ P RF K+LLRLP+ R ++ + E+LFF
Sbjct: 326 DCLNLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFF 385
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
L+G IE+++ +++ + F
Sbjct: 386 SPLIGTVKIESIMTNIISNSLRF 408
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 370 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 429
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 430 VPITRLLSDMYKS 442
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|391329670|ref|XP_003739292.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Metaseiulus occidentalis]
Length = 201
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E LQ+++QC L +Y R +YP QP RFG+LLL LP LR++S+ IE+LFF
Sbjct: 122 GLCDTHPVEMLQDRAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGT 181
Query: 65 VGKTPIETLIRDM 77
+G +E ++ +M
Sbjct: 182 IGNIRVEKILGEM 194
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + +E +Q+K+ CAL+ Y ++P+ P RF K+LLRLP+ R ++ + E+LFF
Sbjct: 334 DCLNLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFF 393
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
L+G IE+++ +++ + F
Sbjct: 394 SPLIGTVKIESIMTNIISNSLRF 416
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+++ IE++FF + +G
Sbjct: 330 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGN 389
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 390 VPITRLLSDMYKS 402
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 457 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 516
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 517 VPITRLLSDMYKS 529
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
ACGL D IE+ Q+++Q L EY R+ YP+Q RFG+LLL LP+LR VS+ IE+LFF
Sbjct: 279 ACGLKDPEQIETTQDQAQLMLGEYIRSTYPTQVARFGRLLLLLPALRRVSALAIEELFFK 338
Query: 63 RLVGKTPIETLIRDML 78
+ +G PIE L+ DM
Sbjct: 339 KTIGTVPIERLLSDMF 354
>gi|332023659|gb|EGI63885.1| Retinoic acid receptor RXR-alpha-A [Acromyrmex echinatior]
Length = 403
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + L+EK ALEEY R P P RF KLLLRLPS+R++ + E FF
Sbjct: 321 DVRGIKSIQEVSLLREKIYAALEEYTRVNCPDDPGRFAKLLLRLPSIRSIGLKSAEHQFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
+L+G+ +E +ML S S
Sbjct: 381 YKLIGEVCVENFFAEMLESPSDL 403
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E LQ+++ L ++ R P+Q RFG++LL LPSLR V+S +E+LFF
Sbjct: 368 GLKDPQQVEILQDQAHMMLTQHIRAHQPAQTARFGRMLLLLPSLRFVTSDQVERLFFRCT 427
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 428 IGDTPMERLLCDMF 441
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L DV +E LQ+++QC L E+ R +YP QP RFG+LLL LP LRT+ S IE LFF +
Sbjct: 681 LCDVQPVEMLQDQAQCVLAEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETI 740
Query: 66 GKTPIETLIRDM 77
G PI L+ DM
Sbjct: 741 GTVPISRLLIDM 752
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L DV +E LQ+++QC L E+ R +YP QP RFG+LLL LP LRT+ S IE LFF +
Sbjct: 658 LCDVQPVEMLQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETI 717
Query: 66 GKTPIETLIRDM 77
G PI L+ DM
Sbjct: 718 GTVPISRLLIDM 729
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E LQ+++QC L +Y R +YP QP RFG+LLL LP LR++S+ IE+LFF
Sbjct: 445 GLCDTHPVEMLQDQAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGT 504
Query: 65 VGKTPIETLIRDM 77
+G +E ++ +M
Sbjct: 505 IGNIRVEKILGEM 517
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y +YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHNRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
ACGL D +ES Q+++Q L EY R Q P+Q RFG+LLL LP+LR +S++ IE+LFF
Sbjct: 302 ACGLKDPEQVESTQDQAQLMLGEYVRAQCPTQLARFGRLLLLLPALRRISTKEIEELFFK 361
Query: 63 RLVGKTPIETLIRDML 78
+ +G PIE L+ DM+
Sbjct: 362 KTIGAVPIERLLSDMM 377
>gi|443690966|gb|ELT92951.1| hypothetical protein CAPTEDRAFT_224945 [Capitella teleta]
Length = 445
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACG+ D + LQ + L YC T YP +P R+GK+LLRLP+LRTVS++ E+
Sbjct: 368 DACGIQDKRKVMQLQSQIIDCLWRYCTTSYPDEPRRYGKMLLRLPALRTVSAKAAERFLS 427
Query: 62 VRLVGKTPIETLIRDML 78
+ L G + L+ +M+
Sbjct: 428 MSLDGSIKMNALVLEMM 444
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + + L+EK ALEEY R P P RF KLLLRLPS+R++ + +E LFF
Sbjct: 341 DVRGLKSIQEVSMLREKIYAALEEYTRVSCPDDPGRFAKLLLRLPSIRSIGLKCLEHLFF 400
Query: 62 VRLVGKT-PIETLIRDMLLSGS 82
+L+G+ +E ++++L S S
Sbjct: 401 FKLLGEERAVEDFLKEVLESPS 422
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D +E+LQ++SQ L ++ R+ YP QP+RFGKLLL LP+LR +SS+ +E LFF R
Sbjct: 331 GLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRT 390
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 391 IGNTPMEKLLCDMF 404
>gi|60360544|dbj|BAD90516.1| mKIAA4145 protein [Mus musculus]
Length = 363
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 271 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 330
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 331 TGLIGNVSIDSII 343
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+++ IE++FF + +G
Sbjct: 311 NAAAISALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGN 370
Query: 68 TPIETLIRDMLLS 80
PI ++ DM S
Sbjct: 371 VPITRVLSDMYKS 383
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL D +E+LQ+++Q L +Y Q + RFG+LLL+LP+LR VSS+ +E +FF
Sbjct: 544 DVKGLRDSLQVEALQDQAQIMLYDYVSNQKLLK-TRFGRLLLQLPALRNVSSRAVEDIFF 602
Query: 62 VRLVGKTPIETLIRDMLLS 80
R +G PIE ++ DM S
Sbjct: 603 RRTIGNIPIERILCDMFKS 621
>gi|194768727|ref|XP_001966463.1| GF21986 [Drosophila ananassae]
gi|190617227|gb|EDV32751.1| GF21986 [Drosophila ananassae]
Length = 512
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + S IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 423 DIRGIKNRSEIEMCREKVYACLDEHCRQEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 482
Query: 62 VRLVGKTPIETLIRDML 78
R++ P+E L + L
Sbjct: 483 FRIISDRPLEELFIEQL 499
>gi|60892853|gb|AAX37291.1| nuclear receptor usp/RXR [Xenos pecki]
Length = 405
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +ESL+EK C +E+ R YP++ RF KLLLRLP +R+++ + + LFF RL
Sbjct: 326 GLKSAQEVESLREKVFCVPDEHTRINYPNEQGRFAKLLLRLPPVRSIALKCTDYLFFCRL 385
Query: 65 VGKTPIETLIRDML 78
V PI+ +R+ML
Sbjct: 386 V--LPIDAFLREML 397
>gi|444705543|gb|ELW46965.1| Nuclear receptor subfamily 2 group C member 2 [Tupaia chinensis]
Length = 606
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 514 DHPGLSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 573
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 574 TGLIGNVSIDSII 586
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL V+ +E L++K ALEEYCRT +P +P RF KLLLRLPSLR++ + +E LFF +L
Sbjct: 349 GLQSVNEVEVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKL 408
Query: 65 VGKTPIETLIRDMLLSGS 82
+G +PI+T + ++L S S
Sbjct: 409 IGDSPIDTFLMEVLESSS 426
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL V+ +E +E ALEEY R YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 493 EARGLRSVAEVEQFREGVYIALEEYTRMSYPDQNSRFPKLLLRLPALRSIGLKCVENLFF 552
Query: 62 VRLVGKTPIETLIRDMLLS 80
++L I+ + +L S
Sbjct: 553 LKLSADATIDQFLLQVLES 571
>gi|281334019|gb|ADA61199.1| ultraspiracle protein [Plutella xylostella]
gi|347810676|gb|AEP25407.1| ultraspiracle protein [Plutella xylostella]
Length = 414
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + +E+L+EK L+EYCR S+ RF LLLRLP+LR++S + E LFF
Sbjct: 325 DVKGLKNRLEVEALREKMYSCLDEYCRRSRSSEEGRFASLLLRLPALRSISLKSFEHLFF 384
Query: 62 VRLVGKTPIETLIRDMLLS 80
LV + I + I+D L S
Sbjct: 385 FHLVADSSIASYIKDALRS 403
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL V+ +E L++K ALEEYCRT +P +P RF KLLLRLPSLR++ + +E LFF +L
Sbjct: 349 GLQSVNEVEVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKL 408
Query: 65 VGKTPIETLIRDMLLSGS 82
+G +PI+T + ++L S S
Sbjct: 409 IGDSPIDTFLMEVLESSS 426
>gi|227150229|gb|ACP19739.1| putative retinoid X receptor [Calanus finmarchicus]
Length = 405
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL D++ +E L+E+ +LEEY R+ + ++ RF KLLLRLP+LR++ + +E LFF
Sbjct: 322 DVKGLKDIARVEQLRERVYASLEEYTRSTHENETGRFAKLLLRLPALRSIGLKCMEHLFF 381
Query: 62 VRLVGKT 68
+++G++
Sbjct: 382 FKIIGES 388
>gi|312381897|gb|EFR27526.1| hypothetical protein AND_05729 [Anopheles darlingi]
Length = 399
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 54/76 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL D IE+LQ+++Q L ++ RTQ+P Q RFG+LLL LP LR V+SQ IE ++F
Sbjct: 321 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSQKIESIYF 380
Query: 62 VRLVGKTPIETLIRDM 77
+ +G TP+E ++ DM
Sbjct: 381 QKTIGNTPMEKVLCDM 396
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L DV +E LQ+++QC L ++ R +YP QP RFG+LLL LP LRT+ S IE LFF +
Sbjct: 596 LCDVQPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETI 655
Query: 66 GKTPIETLIRDM 77
G PI L+ DM
Sbjct: 656 GTVPISRLLIDM 667
>gi|198470596|ref|XP_001355352.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
gi|198145527|gb|EAL32409.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
Length = 487
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 398 DMRGIKNRAEIEICREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 457
Query: 62 VRLVGKTPIETLIRDMLLS 80
R++ P+E L + L S
Sbjct: 458 FRIISDRPLEELFIEQLES 476
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 480 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 539
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 540 TGLIGNVSIDSII 552
>gi|156357575|ref|XP_001624292.1| predicted protein [Nematostella vectensis]
gi|156211059|gb|EDO32192.1| predicted protein [Nematostella vectensis]
Length = 347
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + IE LQ+K AL+E+ +P +P RFG +LLRLP LR++ ++ +E+LF
Sbjct: 266 DLPGLQNQQLIEQLQDKVHSALQEHINLAFPREPNRFGNILLRLPELRSIGTKSLERLFM 325
Query: 62 VRLVGKTPIETLIRDMLLSG 81
+ L G+ T + D+L +G
Sbjct: 326 LNLTGQIHPSTSLSDLLHTG 345
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 556 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 615
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 616 TGLIGNVSIDSII 628
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 480 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 539
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 540 TGLIGNVSIDSII 552
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 523 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 582
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 583 TGLIGNVSIDSII 595
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 523 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 582
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 583 TGLIGNVSIDSII 595
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 556 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 615
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 616 TGLIGNVSIDSII 628
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 556 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 615
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 616 TGLIGNVSIDSII 628
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 556 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 615
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 616 TGLIGNVSIDSII 628
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 523 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 582
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 583 TGLIGNVSIDSII 595
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 519 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 578
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 579 TGLIGNVSIDSII 591
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|195447730|ref|XP_002071344.1| GK25746 [Drosophila willistoni]
gi|194167429|gb|EDW82330.1| GK25746 [Drosophila willistoni]
Length = 483
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 392 DIRGIKNRAEIEMCREKVYACLDEHCRQEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 451
Query: 62 VRLVGKTPIETLIRDMLLS 80
R++ P+E L + L S
Sbjct: 452 FRIISDRPLEDLFIEQLES 470
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 519 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 578
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 579 TGLIGNVSIDSII 591
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 537 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 596
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 597 TGLIGNVSIDSII 609
>gi|1144348|gb|AAC18408.1| TR4, partial [Mus musculus]
Length = 608
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 516 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 575
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 576 TGLIGNVSIDSII 588
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 537 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 596
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 597 TGLIGNVSIDSII 609
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 517 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 576
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 577 TGLIGNVSIDSII 589
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 517 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 576
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 577 TGLIGNVSIDSII 589
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS S IE QEK+Q L++Y + Y R ++L+RLP+LR +S+ + E+LFF
Sbjct: 504 DHPGLSGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSANITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 518 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 577
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 578 TGLIGNVSIDSII 590
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 523 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 582
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 583 TGLIGNVSIDSII 595
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 524 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 583
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 584 TGLIGNVSIDSII 596
>gi|307170858|gb|EFN62969.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 195
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL + IE LQ+++Q L +Y R++YP QP R G+L++ + LR VSS+ +E+LFF
Sbjct: 112 ETVGLHAIQPIEILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFF 171
Query: 62 VRLVGKTPIETLIRDM 77
+G+ PI L+ DM
Sbjct: 172 HETIGEIPISRLLVDM 187
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|409178667|gb|AFV25499.1| ultraspiracle, partial [Zaprionus tuberculatus]
Length = 461
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 382 DIRGIKNRADIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 441
Query: 62 VRLVGKTPIETLIRDMLLS 80
R++ P+E L + L S
Sbjct: 442 FRIISDRPLEELFIEQLES 460
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL V IE LQ+++Q L +Y R++YP QP R G+L++ + LR VSS+ +E+LFF
Sbjct: 360 ETVGLHAVQPIEILQDQAQRILVDYTRSRYPQQPSRIGRLMILVGYLRCVSSKTVERLFF 419
Query: 62 VRLVGKTPIETLIRDM 77
+G+ PI L+ DM
Sbjct: 420 HETIGEIPISRLLVDM 435
>gi|322787044|gb|EFZ13268.1| hypothetical protein SINV_11756 [Solenopsis invicta]
Length = 288
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL + IE LQ+++Q L +Y R++YP QP R G+L++ + LR VSS+ +E+LFF
Sbjct: 205 ETVGLHAIQPIEILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFF 264
Query: 62 VRLVGKTPIETLIRDM 77
+G+ PI L+ DM
Sbjct: 265 HETIGEIPISRLLVDM 280
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 537 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFF 596
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 597 TGLIGNVSIDSII 609
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ GL V IE LQ+++Q L +Y R++YP QP R G+L++ + LR VSS+ +E+LFF
Sbjct: 464 ETVGLHAVQPIEILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFF 523
Query: 62 VRLVGKTPIETLIRDM 77
+G+ PI L+ DM
Sbjct: 524 HETIGEIPISRLLVDM 539
>gi|268053961|gb|ACY92467.1| AmNR2 nuclear receptor [Saccoglossus kowalevskii]
Length = 409
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL D + + +LQ K AL Y +T YP R+ K+LLRLP+LRTV+S+ E+
Sbjct: 332 DAAGLQDKTSVTTLQAKIVDALRHYIKTHYPKDAKRYAKVLLRLPTLRTVASKATERFLS 391
Query: 62 VRLVGKTPIETLIRDML 78
+ L G I L+ +M+
Sbjct: 392 MTLDGTIQINELVSEMM 408
>gi|409178681|gb|AFV25506.1| ultraspiracle, partial [Drosophila malerkotliana]
Length = 463
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 390 DIRGIKNRAEIEMCREKVYACLDEHCRQEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 449
Query: 62 VRLVGKTPIETLI 74
R++ P+E L
Sbjct: 450 FRIISDRPLEELF 462
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L DV +E LQ+++QC L ++ R +YP QP RFG+LLL LP LRT+ S IE LFF +
Sbjct: 627 LCDVQPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSVTIETLFFKETI 686
Query: 66 GKTPIETLIRDM 77
G PI L+ DM
Sbjct: 687 GTVPISRLLIDM 698
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 524 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 583
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 584 TGLIGNVSIDSII 596
>gi|291234849|ref|XP_002737359.1| PREDICTED: nuclear receptor 2 [Saccoglossus kowalevskii]
Length = 410
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL D + + +LQ K AL Y +T YP R+ K+LLRLP+LRTV+S+ E+
Sbjct: 333 DAAGLQDKTSVTTLQAKIVDALRHYIKTHYPKDAKRYAKVLLRLPTLRTVASKATERFLS 392
Query: 62 VRLVGKTPIETLIRDML 78
+ L G I L+ +M+
Sbjct: 393 MTLDGTIQINELVSEMM 409
>gi|76364252|gb|ABA41640.1| retinoic X receptor-like protein [Strongylocentrotus purpuratus]
Length = 307
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA L+ V +E L+EK +LEEYCR QY +P RF KLLLRLP+LR++ + +E
Sbjct: 238 DAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHQGR 297
Query: 62 VRL 64
+RL
Sbjct: 298 IRL 300
>gi|409178665|gb|AFV25498.1| ultraspiracle, partial [Drosophila limbata]
Length = 442
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 369 DIRGIKNRADIELCREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 428
Query: 62 VRLVGKTPIETLI 74
R++ P+E L
Sbjct: 429 FRIISDRPLEELF 441
>gi|118777094|ref|XP_307453.3| Anopheles gambiae str. PEST AGAP012600-PA [Anopheles gambiae str.
PEST]
gi|116133146|gb|EAA03055.4| AGAP012600-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL D IE+LQ+++Q L ++ RTQ+P Q RFG+LLL LP LR V+S IE ++F
Sbjct: 124 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYF 183
Query: 62 VRLVGKTPIETLIRDM 77
+ +G TP+E ++ DM
Sbjct: 184 QKTIGNTPMEKVLCDM 199
>gi|426339581|ref|XP_004033724.1| PREDICTED: nuclear receptor subfamily 2 group C member 2, partial
[Gorilla gorilla gorilla]
Length = 616
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 524 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 583
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 584 TGLIGNVSIDSII 596
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 519 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFF 578
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 579 TGLIGNVSIDSII 591
>gi|349804913|gb|AEQ17929.1| putative nuclear receptor subfamily 2 group f number 1
[Hymenochirus curtipes]
Length = 168
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQ 34
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+Q
Sbjct: 136 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQ 168
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L + R Q P+ P RFG+LLL LP LRTV + +E ++F R
Sbjct: 534 GLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRTVPAARVELIYFHRT 593
Query: 65 VGKTPIETLIRDMLLSGSSFSWP 87
+G TP+E ++ D +SG+ F +P
Sbjct: 594 IGNTPMEKVLCD--ISGNEFRYP 614
>gi|311772275|pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
gi|311772276|pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QE +Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 157 DHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFF 216
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 217 TGLIGNVSIDSII 229
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R + L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARTLVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>gi|124431283|gb|ABN11290.1| ultraspiracle protein [Myzus persicae]
Length = 267
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL V+ ++ L++K ALEEYCRT +P +P RF KLLLRLPSLR++ + +E LFF +L
Sbjct: 183 GLQSVNEVQVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKL 242
Query: 65 VGKTPIETLIRDMLLSGS 82
+G +PI+T + ++L S S
Sbjct: 243 IGDSPIDTFLMEVLESSS 260
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + +E LQEK+ AL++Y ++P+ P RF K+LLRLP+ R ++ + E+LFF
Sbjct: 297 DCSSLKNPQQVERLQEKAHRALKQYVENRHPNTPERFAKILLRLPATRMLTKRAAEELFF 356
Query: 62 VRLVGKTPIETLIRDMLLS 80
L+G IE ++ ++ S
Sbjct: 357 SPLIGAVRIENIMNSIISS 375
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 55/82 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT YP +P RF KLLLRLPSLR++S + +E LFF
Sbjct: 353 DVRGLKSSQEVELLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFF 412
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
RL+G PI+ + +ML S SS
Sbjct: 413 FRLIGNVPIDEFLMEMLESPSS 434
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 55/82 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT YP +P RF KLLLRLPSLR++S + +E LFF
Sbjct: 330 DVRGLKSSQEVELLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFF 389
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
RL+G PI+ + +ML S SS
Sbjct: 390 FRLIGNVPIDEFLMEMLESPSS 411
>gi|33357317|pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
gi|33357318|pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
gi|33357319|pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
gi|33357320|pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 157 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 215
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
F++L G I+ L+++MLL GS+ P+ +
Sbjct: 216 FIKLFGMAKIDNLLQEMLLGGSASDAPHAH 245
>gi|195046041|ref|XP_001992077.1| GH24408 [Drosophila grimshawi]
gi|193892918|gb|EDV91784.1| GH24408 [Drosophila grimshawi]
Length = 528
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + S +E +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 439 DIRGIKNRSDVELCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 498
Query: 62 VRLVGKTPIETLIRDML 78
R++ P+E L + L
Sbjct: 499 FRIICDKPLEELFGEQL 515
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L ++CRTQ P Q RFG+LLL LP LR V + +E +FF +
Sbjct: 318 GLKDPSQIENLQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKT 377
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 378 IGNTPMEKVLCDM 390
>gi|27372315|dbj|BAC53670.1| ultraspiracle [Chilo suppressalis]
Length = 410
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + +E L+EK L+EYCR S+ RF LLLRLP+LR++S + E LFF
Sbjct: 321 DIKGLGNRQEVEVLREKMYSCLDEYCRRVRVSEEGRFASLLLRLPALRSISLKSFEHLFF 380
Query: 62 VRLVGKTPIETLIRDML 78
LV + I IRD+L
Sbjct: 381 FHLVADSSIAGYIRDLL 397
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L ++CRTQ P Q RFG+LLL LP LR V + +E +FF +
Sbjct: 395 GLKDPSQIENLQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKT 454
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 455 IGNTPMEKVLCDM 467
>gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4-alpha [Danio rerio]
gi|26006393|gb|AAN77281.1|AF473824_1 hepatocyte nuclear factor 4 alpha [Danio rerio]
Length = 454
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 288 DAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 346
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
FV+L G I+ L+++MLL GS+ P+ +
Sbjct: 347 FVKLFGMAKIDNLLQEMLLGGSANEAPHAH 376
>gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio]
Length = 463
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 297 DAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 355
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
FV+L G I+ L+++MLL GS+ P+ +
Sbjct: 356 FVKLFGMAKIDNLLQEMLLGGSANEAPHAH 385
>gi|170065210|ref|XP_001867845.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882297|gb|EDS45680.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 505
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL D IE+LQ+++Q L ++ RTQ+P Q RFG+LLL LP LR ++S IE ++F
Sbjct: 427 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYF 486
Query: 62 VRLVGKTPIETLIRDM 77
+ +G TP+E ++ DM
Sbjct: 487 QKTIGNTPMEKVLCDM 502
>gi|48475404|gb|AAT44330.1| USP [Plodia interpunctella]
Length = 415
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 45/79 (56%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ +E L+EK L+EYCR S+ RF LLLRLP+LR++S + E LFF
Sbjct: 326 DVKGLNSRQEVEVLREKMYSCLDEYCRRSRGSEEGRFASLLLRLPALRSISLKSFEHLFF 385
Query: 62 VRLVGKTPIETLIRDMLLS 80
LV I IRD L S
Sbjct: 386 FHLVADGSIPGYIRDALRS 404
>gi|57281681|dbj|BAD86632.1| hepatocyte nuclear factor 4, alpha [Macaca fascicularis]
Length = 156
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 43 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 101
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 102 FIKLFGMAKIDNLLQEMLLGGSS 124
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+++ IE QEK+ L++Y YP R KLL+RLP+LR +S+ V E+LFF
Sbjct: 510 DHPGINNTPQIERFQEKAYMELQDYVSRTYPEDSYRLSKLLVRLPALRLISAAVTEELFF 569
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 570 AGLIGNVQIDSII 582
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 53/73 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D++ IE+LQ+++Q L ++ R+Q+P+ P RFG+LLL LP LR V + +E ++F R
Sbjct: 476 GLKDLNQIENLQDQAQVMLGQHTRSQHPNNPARFGRLLLLLPLLRNVPATRVELIYFHRT 535
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 536 IGNTPMEKVLCDM 548
>gi|157423601|gb|AAI53624.1| Hnf4a protein [Danio rerio]
Length = 427
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 261 DAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 319
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
FV+L G I+ L+++MLL GS+ P+ +
Sbjct: 320 FVKLFGMAKIDNLLQEMLLGGSANEAPHAH 349
>gi|319063119|ref|NP_001187505.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
gi|308323187|gb|ADO28730.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
Length = 454
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 288 DAKGLSDPSKIKRIRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 346
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPY 88
FV+L G I+ L+++MLL GS+ P+
Sbjct: 347 FVKLFGMAKIDNLLQEMLLGGSANEAPH 374
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + IE +Q+++Q L + R +PS P R KLLLRLP+L ++S V+E+LFF
Sbjct: 571 DTPSLPNAPQIERVQDRAQRELANHVRQTHPSNPDRLAKLLLRLPALHSLSPSVMEELFF 630
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 631 AGLIGSVQIDSII 643
>gi|432867223|ref|XP_004071086.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 431
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD+ I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 266 DAKGLSDLGKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 324
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPY 88
FV+L G I+ L+++MLL GS+ P+
Sbjct: 325 FVKLFGMAKIDNLLQEMLLGGSANEAPH 352
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 51/73 (69%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L ++ R Q P+ P RFG+LLL LP LRTV + +E ++F R
Sbjct: 462 GLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRTVPASRVELIYFHRT 521
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 522 IGNTPMEKVLCDM 534
>gi|195130249|ref|XP_002009565.1| GI15428 [Drosophila mojavensis]
gi|193908015|gb|EDW06882.1| GI15428 [Drosophila mojavensis]
Length = 484
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 395 DIRGIKNREDIEHCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 454
Query: 62 VRLVGKTPIETLIRDMLLS 80
R++ P++ L + L S
Sbjct: 455 FRIISDRPLDELFIEQLES 473
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL + IE +E+ L+E+CRT++P RF +LLLRLP+LR++S + ++ LFF R+
Sbjct: 375 GLKGRNEIEVCREQVYACLDEHCRTEHPGDDSRFAQLLLRLPALRSISLKCLDHLFFFRI 434
Query: 65 VGKTPIETLIRDML 78
+G ++ L + L
Sbjct: 435 MGDKQLDQLFYEQL 448
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GL D IE+LQ+++Q L ++ RTQ+P Q RFG+LLL LP LR ++S IE ++F
Sbjct: 516 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYF 575
Query: 62 VRLVGKTPIETLIRDM 77
+ +G TP+E ++ DM
Sbjct: 576 QKTIGNTPMEKVLCDM 591
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + IE QEK+ L++Y YP R KLL+RLP+LR +S+ V E+LFF
Sbjct: 510 DHPGIDNTPQIERFQEKAYMELQDYVTRTYPEDCYRLSKLLVRLPALRLISANVTEELFF 569
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 570 AGLIGNVQIDSII 582
>gi|195397487|ref|XP_002057360.1| GJ16389 [Drosophila virilis]
gi|194147127|gb|EDW62846.1| GJ16389 [Drosophila virilis]
Length = 499
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 410 DIRGIKNRADIELCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 469
Query: 62 VRLVGKTPIETLIRDMLLS 80
R++ P++ L + L S
Sbjct: 470 FRIISDRPLDELFIEQLES 488
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L ++ R Q P P RFG+LLL LP LRTV + +E ++F R
Sbjct: 463 GLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRT 522
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 523 IGNTPMEKVLCDM 535
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L ++ R Q P P RFG+LLL LP LRTV + +E ++F R
Sbjct: 465 GLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRT 524
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 525 IGNTPMEKVLCDM 537
>gi|170061655|ref|XP_001866328.1| retinoid x receptor [Culex quinquefasciatus]
gi|167879792|gb|EDS43175.1| retinoid x receptor [Culex quinquefasciatus]
Length = 478
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL I+ ++EK L+EYC+ Q+PS+ RF +LLLRLP+LR++S + ++ L F
Sbjct: 381 DIRGLKCQKEIDHMREKIYGCLDEYCKQQHPSEDGRFAQLLLRLPALRSISLKCLDHLNF 440
Query: 62 VRLVGKTPIETLIRDML 78
+RL+ ++ I +ML
Sbjct: 441 IRLLSDKHLDNFIIEML 457
>gi|390357871|ref|XP_003729121.1| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 1
[Strongylocentrotus purpuratus]
Length = 493
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ + I+ L+ + Q LE+Y + RFG++LL LP L++++ Q+IEQ+ F
Sbjct: 294 DAKGLSEPNRIKMLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQSITWQMIEQIQF 353
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
RL+G ++ L+++MLL GS+
Sbjct: 354 ARLMGVAKVDNLLQEMLLGGSA 375
>gi|10946385|gb|AAG24887.1|AF305214_1 ultraspiracle isoform-B [Aedes aegypti]
gi|403182355|gb|EJY57333.1| AAEL000395-PB [Aedes aegypti]
Length = 459
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL I+ ++EK L+E+C+ Q+PS+ RF +LLLRLP+LR++S + ++ L F
Sbjct: 379 DIRGLKCQKEIDGMREKIYACLDEHCKQQHPSEDGRFAQLLLRLPALRSISLKCLDHLNF 438
Query: 62 VRLVGKTPIETLIRDML 78
+RL+ +++ I +ML
Sbjct: 439 IRLLSDKHLDSFIVEML 455
>gi|72013357|ref|XP_784447.1| PREDICTED: retinoic acid receptor RXR-gamma-like
[Strongylocentrotus purpuratus]
Length = 448
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL +V + LQ+ L++Y + +P++P R+GK+L+RLP+LR VS++ +EQ
Sbjct: 368 DAPGLVEVDSVTELQKCYLDCLQKYIASAFPNEPKRYGKILMRLPTLRKVSAKAMEQFMG 427
Query: 62 VRLVGKTPIETLIRDML 78
++L GK + L+ +M+
Sbjct: 428 LKLAGKIQVPGLVEEMM 444
>gi|10946383|gb|AAG24886.1|AF305213_1 ultraspiracle isoform-A [Aedes aegypti]
Length = 484
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL I+ ++EK L+E+C+ Q+PS+ RF +LLLRLP+LR++S + ++ L F
Sbjct: 404 DIRGLKCQKEIDGMREKIYACLDEHCKQQHPSEDGRFAQLLLRLPALRSISLKCLDHLNF 463
Query: 62 VRLVGKTPIETLIRDML 78
+RL+ +++ I +ML
Sbjct: 464 IRLLSDKHLDSFIVEML 480
>gi|157132575|ref|XP_001656078.1| retinoid x receptor (rxr) [Aedes aegypti]
gi|108884373|gb|EAT48598.1| AAEL000395-PA [Aedes aegypti]
Length = 484
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL I+ ++EK L+E+C+ Q+PS+ RF +LLLRLP+LR++S + ++ L F
Sbjct: 404 DIRGLKCQKEIDGMREKIYACLDEHCKQQHPSEDGRFAQLLLRLPALRSISLKCLDHLNF 463
Query: 62 VRLVGKTPIETLIRDML 78
+RL+ +++ I +ML
Sbjct: 464 IRLLSDKHLDSFIVEML 480
>gi|351703585|gb|EHB06504.1| Hepatocyte nuclear factor 4-alpha [Heterocephalus glaber]
Length = 474
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPSKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT YP +P RF KLLLRLPSLR++S + +E LFF
Sbjct: 365 DVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFF 424
Query: 62 VRLVGKTPIETLIRDML 78
RL+G PI+ + +ML
Sbjct: 425 FRLIGNVPIDEFLMEML 441
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 53/78 (67%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +E L+EK ALEEY RT +P +P RF KLLLRLPSLR++ + +E LFF RL
Sbjct: 332 GLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRSIGLKCLEHLFFFRL 391
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+T + +ML S S
Sbjct: 392 IGDVPIDTFLMEMLESPS 409
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT YP +P RF KLLLRLPSLR++S + +E LFF
Sbjct: 353 DVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFF 412
Query: 62 VRLVGKTPIETLIRDML 78
RL+G PI+ + +ML
Sbjct: 413 FRLIGNVPIDEFLMEML 429
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 53/78 (67%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +E L+EK ALEEY RT +P +P RF KLLLRLPSLR++ + +E LFF RL
Sbjct: 310 GLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRSIGLKCLEHLFFFRL 369
Query: 65 VGKTPIETLIRDMLLSGS 82
+G PI+T + +ML S S
Sbjct: 370 IGDVPIDTFLMEMLESPS 387
>gi|344279999|ref|XP_003411773.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha-like [Loxodonta africana]
Length = 464
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPSKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMXKIDNLLQEMLLGGSS 379
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT YP +P RF KLLLRLPSLR++S + +E LFF
Sbjct: 343 DVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFF 402
Query: 62 VRLVGKTPIETLIRDML 78
RL+G PI+ + +ML
Sbjct: 403 FRLIGNVPIDEFLMEML 419
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +E L+EK ALEEY RT YP +P RF KLLLRLPSLR++S + +E LFF
Sbjct: 331 DVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFF 390
Query: 62 VRLVGKTPIETLIRDML 78
RL+G PI+ + +ML
Sbjct: 391 FRLIGNVPIDEFLMEML 407
>gi|301763976|ref|XP_002917411.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Ailuropoda melanoleuca]
Length = 464
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LPSL++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPSLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|426391782|ref|XP_004062245.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Gorilla
gorilla gorilla]
Length = 184
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQL 59
+DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 17 VDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSR-GRFGELLLLLPTLQSITWQMIEQI 75
Query: 60 FFVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 76 QFIKLFGMAKIDNLLQEMLLGGSS 99
>gi|270010979|gb|EFA07427.1| hepatocyte nuclear factor 4 [Tribolium castaneum]
Length = 502
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+A GLS+ + I++L+ + Q LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 330 NAKGLSEPARIKALRYQIQINLEDYISDRQYDSRG-RFGELLLTLPALQSITWQMIEQIQ 388
Query: 61 FVRLVGKTPIETLIRDMLLSGSSF 84
F +L G I++L+++MLL G+S
Sbjct: 389 FAKLFGVAHIDSLLQEMLLGGASI 412
>gi|301763974|ref|XP_002917410.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Ailuropoda melanoleuca]
Length = 474
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LPSL++++ Q+IEQ+ F
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPSLQSITWQMIEQIQF 357
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GSS
Sbjct: 358 IKLFGMAKIDNLLQEMLLGGSS 379
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L DV +E+LQ+++Q L EY + +Q RFG+LLL P+LR + + ++ ++FF
Sbjct: 279 DISRLKDVRPVENLQDQAQMILAEYSILHHQNQSTRFGRLLLATPALRAIPASLVSRIFF 338
Query: 62 VRLVGKTPIETLIRDM 77
VG PIE L+ D+
Sbjct: 339 RETVGNIPIERLVCDI 354
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 288 DAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 346
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPY 88
FV+L G I+ L+++MLL GS+ P+
Sbjct: 347 FVKLFGMAKIDNLLQEMLLGGSANEAPH 374
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRMRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G T I+ L+++MLL GSS
Sbjct: 357 FIKLFGVTKIDNLLQEMLLGGSS 379
>gi|380023918|ref|XP_003695756.1| PREDICTED: transcription factor HNF-4 homolog [Apis florea]
Length = 449
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+A GLS+ I+ L+ + Q LE+Y QY S+ RFG++LL LP+L+++S Q+IEQ+
Sbjct: 281 NAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRG-RFGEILLTLPALQSISWQMIEQIQ 339
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FVRL G I+ L+++MLL G++
Sbjct: 340 FVRLFGVAHIDNLLQEMLLGGAT 362
>gi|226437755|gb|ACO56245.1| hepatocyte nuclear factor 4 alpha [Sparus aurata]
Length = 454
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 288 DAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 346
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPY 88
FV+L G I+ L+++MLL GS+ P+
Sbjct: 347 FVKLFGMAKIDNLLQEMLLGGSANEAPH 374
>gi|350421758|ref|XP_003492948.1| PREDICTED: transcription factor HNF-4 homolog [Bombus impatiens]
Length = 444
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+A GLS+ I+ L+ + Q LE+Y QY S+ RFG++LL LP+L+++S Q+IEQ+
Sbjct: 276 NAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRG-RFGEILLTLPALQSISWQMIEQIQ 334
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FVRL G I+ L+++MLL G++
Sbjct: 335 FVRLFGVAHIDNLLQEMLLGGAT 357
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL D +E+LQ+++Q L ++CR Q P+ P RFG+LLL LP LR S IE +FF
Sbjct: 359 DTRGLKDPHQVENLQDQAQLMLFQHCRAQRPALPARFGRLLLMLPLLRLAPSSHIENIFF 418
Query: 62 VRLVGKTPIETLIRDMLLS 80
R +G TP+E L+ DM S
Sbjct: 419 RRTIGNTPMEKLLCDMFKS 437
>gi|218156198|dbj|BAH03331.1| retinoid X receptor [Lethenteron camtschaticum]
Length = 306
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTV 51
DA GLS +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++
Sbjct: 252 DAKGLSSPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSI 301
>gi|340726817|ref|XP_003401749.1| PREDICTED: transcription factor HNF-4 homolog isoform 1 [Bombus
terrestris]
Length = 453
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+A GLS+ I+ L+ + Q LE+Y QY S+ RFG++LL LP+L+++S Q+IEQ+
Sbjct: 285 NAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRG-RFGEILLTLPALQSISWQMIEQIQ 343
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FVRL G I+ L+++MLL G++
Sbjct: 344 FVRLFGVAHIDNLLQEMLLGGAT 366
>gi|146400035|gb|ABQ28715.1| RXR receptor [Brugia malayi]
Length = 465
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +VS IESL++K LE+YCR +P+Q RF KLLLR+P+LR++S E F+
Sbjct: 383 GLQNVSVIESLRDKVMVCLEDYCRQHHPTQTQRFAKLLLRMPALRSLSLHCAENDSFI-- 440
Query: 65 VGKTPIETLIR 75
+ I+ LIR
Sbjct: 441 IAAPTIQDLIR 451
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ ++ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 298 DAKGLSDPGKIKRMRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 357
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G T I+ L+++MLL GSS
Sbjct: 358 IKLFGVTKIDNLLQEMLLGGSS 379
>gi|281345563|gb|EFB21147.1| hypothetical protein PANDA_005626 [Ailuropoda melanoleuca]
Length = 489
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LPSL++++ Q+IEQ+ F
Sbjct: 313 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPSLQSITWQMIEQIQF 372
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GSS
Sbjct: 373 IKLFGMAKIDNLLQEMLLGGSS 394
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+A GLS+ I+ L+ + Q LE+Y QY S+ RFG++LL LP+L+++S Q+IEQ+
Sbjct: 371 NAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRG-RFGEILLTLPALQSISWQMIEQIQ 429
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FVRL G I+ L+++MLL G++
Sbjct: 430 FVRLFGVAHIDNLLQEMLLGGAT 452
>gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSSFSWPY 88
FV+L G I+ L+++MLL GS+ P+
Sbjct: 348 FVKLFGMAKIDNLLQEMLLGGSANEAPH 375
>gi|340726819|ref|XP_003401750.1| PREDICTED: transcription factor HNF-4 homolog isoform 2 [Bombus
terrestris]
Length = 485
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+A GLS+ I+ L+ + Q LE+Y QY S+ RFG++LL LP+L+++S Q+IEQ+
Sbjct: 317 NAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRG-RFGEILLTLPALQSISWQMIEQIQ 375
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FVRL G I+ L+++MLL G++
Sbjct: 376 FVRLFGVAHIDNLLQEMLLGGAT 398
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L ++ R Q P+ P RFG+LLL LP LR V + +E ++F R
Sbjct: 463 GLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRAVPAARVELIYFHRT 522
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 523 IGNTPMEKVLCDM 535
>gi|390357873|ref|XP_780389.2| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 2
[Strongylocentrotus purpuratus]
Length = 468
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLS+ + I+ L+ + Q LE+Y QY S+ RFG++LL LP L++++ Q+IEQ+
Sbjct: 269 DAKGLSEPNRIKMLRYQVQIHLEDYINDRQYDSRG-RFGEILLMLPPLQSITWQMIEQIQ 327
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F RL+G ++ L+++MLL GS+
Sbjct: 328 FARLMGVAKVDNLLQEMLLGGSA 350
>gi|242019940|ref|XP_002430416.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515546|gb|EEB17678.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 362
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+A GLSD + I+ L+ + Q LE+Y + RFG++LL LP+L++++ Q+IEQ+ F
Sbjct: 278 NAKGLSDTTRIKHLRYQIQINLEDYISDRQYDTRGRFGEILLILPALQSITWQMIEQIQF 337
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L G I+ L+++MLL G S
Sbjct: 338 AKLFGVARIDNLLQEMLLGGKHLS 361
>gi|171362733|dbj|BAG14373.1| retinoid X receptor alpha homolog [Lepisosteus platyrhinchus]
Length = 288
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTV 51
D+ GLS+ S +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++
Sbjct: 239 DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 288
>gi|410055259|ref|XP_514664.4| PREDICTED: hepatocyte nuclear factor 4-alpha [Pan troglodytes]
Length = 482
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 306 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 364
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 365 FIKLFGMAKIDNLLQEMLLGGSS 387
>gi|120974730|gb|ABM46723.1| NR5A2 [Gorilla gorilla]
gi|124111233|gb|ABM92008.1| NR5A2 [Pan troglodytes]
Length = 131
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 49 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 108
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 109 YKHLNGDVPYNNLLIEML 126
>gi|355707933|gb|AES03111.1| nuclear receptor subfamily 5, group A, member 2 [Mustela putorius
furo]
Length = 120
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 38 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 97
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 98 YKHLNGDVPYNNLLIEML 115
>gi|403290713|ref|XP_003936452.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|397511213|ref|XP_003825973.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Pan
paniscus]
Length = 474
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|403290711|ref|XP_003936451.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 474
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 357
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GSS
Sbjct: 358 IKLFGMAKIDNLLQEMLLGGSS 379
>gi|395829034|ref|XP_003787666.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Otolemur
garnettii]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|397511215|ref|XP_003825974.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Pan
paniscus]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|390462622|ref|XP_002747621.2| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha
isoform 2 [Callithrix jacchus]
Length = 517
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 341 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 400
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GSS
Sbjct: 401 IKLFGMAKIDNLLQEMLLGGSS 422
>gi|432102757|gb|ELK30236.1| Hepatocyte nuclear factor 4-alpha [Myotis davidii]
Length = 455
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSS 370
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|444726234|gb|ELW66773.1| Hepatocyte nuclear factor 4-alpha [Tupaia chinensis]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|73992030|ref|XP_543008.2| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Canis lupus
familiaris]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias sibiricus]
Length = 455
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSS 370
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|395829032|ref|XP_003787665.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Otolemur
garnettii]
Length = 474
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|156378253|ref|XP_001631058.1| predicted protein [Nematostella vectensis]
gi|156218091|gb|EDO38995.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYP-SQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
+ D ++ LQE+S C L+ Y ++YP RF K+LLRLPSL + +E+LFF L
Sbjct: 297 VQDQKQVDKLQEQSHCGLKSYIDSKYPIGNSGRFAKILLRLPSLHLIDRFDVEELFFAPL 356
Query: 65 VGKTPIETLIRDMLLSGSSFSW 86
+G IE+++ ++L S+ S+
Sbjct: 357 LGGVKIESIMEKIILRSSTSSF 378
>gi|338719299|ref|XP_003363979.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|297707153|ref|XP_002830380.1| PREDICTED: hepatocyte nuclear factor 4-alpha, partial [Pongo
abelii]
Length = 508
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 342 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSR-GRFGELLLLLPTLQSITWQMIEQIQ 400
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 401 FIKLFGMAKIDNLLQEMLLGGSS 423
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L + S +E +++SQ L +Y +P P RFGKLLL +P+L+ V ++ +E+LFF R +
Sbjct: 412 LREKSKVEFFRDQSQVVLAQYENIVHPESPARFGKLLLTMPALKRVGTENLEELFFRRTL 471
Query: 66 GKTPIETLIRDM 77
GK IE ++ M
Sbjct: 472 GKVQIEKILERM 483
>gi|355784472|gb|EHH65323.1| hypothetical protein EGM_02066 [Macaca fascicularis]
Length = 527
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 361 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 419
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 420 FIKLFGMAKIDNLLQEMLLGGSS 442
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GLS S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 499 DHPGLSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 558
Query: 62 VRLVGK 67
L+G
Sbjct: 559 TGLIGN 564
>gi|185132297|ref|NP_001117708.1| FTZ-F1 related protein [Oncorhynchus mykiss]
gi|84469418|dbj|BAE71417.1| FTZ-F1 related protein [Oncorhynchus mykiss]
Length = 512
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 430 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 489
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 490 YKHLNGDVPCNNLLIEML 507
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|49258498|pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 157 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 215
Query: 61 FVRLVGKTPIETLIRDMLLSGS 82
F++L G I+ L+++MLL GS
Sbjct: 216 FIKLFGMAKIDNLLQEMLLGGS 237
>gi|355563116|gb|EHH19678.1| hypothetical protein EGK_02387 [Macaca mulatta]
Length = 527
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 361 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 419
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 420 FIKLFGMAKIDNLLQEMLLGGSS 442
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSS 370
>gi|91177055|gb|ABE26882.1| hepatocyte nuclear factor 4alpha [Sus scrofa]
Length = 474
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|402594829|gb|EJW88755.1| retinoid X receptor [Wuchereria bancrofti]
Length = 455
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL +VS IESL++K LE+YCR +P+Q RF KLLLR+P+LR++S E F+
Sbjct: 373 GLRNVSVIESLRDKVMVCLEDYCRQHHPTQTQRFAKLLLRMPALRSLSLHCAENDSFI-- 430
Query: 65 VGKTPIETLIR 75
+ I+ LIR
Sbjct: 431 ITAPTIQDLIR 441
>gi|400270854|gb|AFP75251.1| hepatocyte nuclear factor 4, partial [Tupaia belangeri]
Length = 474
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|73992032|ref|XP_852731.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Canis lupus
familiaris]
Length = 474
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSS 379
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSS 370
>gi|402882458|ref|XP_003904758.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha,
partial [Papio anubis]
Length = 425
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 259 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 317
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GSS
Sbjct: 318 FIKLFGMAKIDNLLQEMLLGGSS 340
>gi|86620853|gb|AAP84609.2| steroidogenic factor 1 [Odontesthes bonariensis]
Length = 503
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 421 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 480
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 481 YKHLNGDVPCNNLLIEML 498
>gi|94959279|gb|ABF47516.1| steroidogenic factor 1 [Odontesthes hatcheri]
Length = 492
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 410 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 469
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 470 YKHLNGDVPCNNLLIEML 487
>gi|45686253|gb|AAS75791.1| FTZ-F1 [Acanthopagrus schlegelii]
Length = 520
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 441 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 500
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 501 YKHLNGDVPCNNLLIEML 518
>gi|157278393|ref|NP_001098298.1| LRH-1 [Oryzias latipes]
gi|74273322|gb|ABA01329.1| LRH-1 [Oryzias latipes]
Length = 523
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 441 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 500
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 501 YKHLNGDVPCNNLLIEML 518
>gi|397511217|ref|XP_003825975.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 3 [Pan
paniscus]
Length = 467
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 291 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 350
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GSS
Sbjct: 351 IKLFGMAKIDNLLQEMLLGGSS 372
>gi|348523091|ref|XP_003449057.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Oreochromis niloticus]
Length = 521
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 439 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 498
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 499 YKHLNGDVPCNNLLIEML 516
>gi|149733291|ref|XP_001503043.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Equus
caballus]
gi|338719297|ref|XP_003363978.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 474
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 357
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GSS
Sbjct: 358 IKLFGMAKIDNLLQEMLLGGSS 379
>gi|15145791|gb|AAK54449.1| nuclear receptor FF1aE [Danio rerio]
gi|190340123|gb|AAI63522.1| Nr5a2 protein [Danio rerio]
Length = 517
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 435 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 494
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 495 YKHLNGDVPCNNLLIEML 512
>gi|410921720|ref|XP_003974331.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Takifugu rubripes]
Length = 525
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 443 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 502
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 503 YKHLNGDVPCNNLLIEML 520
>gi|410921718|ref|XP_003974330.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 1 [Takifugu rubripes]
Length = 525
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 443 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 502
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 503 YKHLNGDVPCNNLLIEML 520
>gi|332230768|ref|XP_003264567.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 5 group
A member 2 [Nomascus leucogenys]
Length = 541
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 459 LDVKNLENFQXVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 518
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 519 YKHLNGDVPYNNLLIEML 536
>gi|218683821|gb|ACL00865.1| steroidogenic factor 1 [Kryptolebias marmoratus]
Length = 524
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 442 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 501
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 502 YKHLNGDVPCNNLLIEML 519
>gi|361131805|pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 270 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 329
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 330 YKHLNGDVPYNNLLIEML 347
>gi|405972025|gb|EKC36822.1| Nuclear receptor subfamily 5 group A member 2 [Crassostrea gigas]
Length = 540
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + +E+ QEK AL EYC YP +FG++LLRLP +R +S E L++
Sbjct: 459 DVPGLENRQAVENSQEKVNSALMEYCVNFYPHLKDKFGQVLLRLPEVRLISMHAEEFLYY 518
Query: 62 VRLVGKTPIETLIRDMLLS 80
L G+ P +TL+ +ML S
Sbjct: 519 KHLNGEIPDQTLLIEMLHS 537
>gi|301607256|ref|XP_002933229.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 420
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD + I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 253 DAKGLSDPTKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 311
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FV+L G I+ L+++MLL GS+
Sbjct: 312 FVKLFGMAKIDNLLQEMLLGGSA 334
>gi|409178663|gb|AFV25497.1| ultraspiracle, partial [Drosophila funebris]
Length = 433
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + ++ LFF
Sbjct: 354 DIRGIKNRAEIELCREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALRSISLKCLDHLFF 413
Query: 62 VRLVGKTPIETLIRDMLLS 80
+ P+E L + L S
Sbjct: 414 FHINSDRPLEELFIEQLES 432
>gi|194592436|gb|ACF76563.1| LRH-1 [Tachysurus fulvidraco]
Length = 500
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 418 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 477
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 478 YKHLNGDVPCNNLLIEML 495
>gi|405972081|gb|EKC36868.1| Hepatocyte nuclear factor 4-alpha [Crassostrea gigas]
Length = 506
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+D I+S + + Q LE+Y + RFG++LL LP L++++ Q+IEQ+ F
Sbjct: 293 DAKGLTDPQKIKSFRYQVQVNLEDYINDRQYDTRGRFGEILLMLPPLQSITWQMIEQVQF 352
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L G I+ L+++MLL G++
Sbjct: 353 AKLFGMARIDNLLQEMLLGGAA 374
>gi|307196327|gb|EFN77940.1| Transcription factor HNF-4-like protein [Harpegnathos saltator]
Length = 468
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 3 ACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
A GLS+ ++ ++ + Q LE+Y QY S+ RFG++LL LP+L++++ Q+IEQ+ F
Sbjct: 305 AQGLSEAGKVKHMRTQIQMNLEDYISDRQYHSRG-RFGEILLMLPALQSITWQMIEQVHF 363
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
V+L G ++TL+++MLL G++
Sbjct: 364 VKLFGVVHVDTLLQEMLLGGTT 385
>gi|384482487|pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 163 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 222
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 223 YKHLNGDVPYNNLLIEML 240
>gi|61680816|pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
gi|61680817|pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
gi|384482483|pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
gi|384482484|pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 173 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 232
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 233 YKHLNGDVPYNNLLIEML 250
>gi|24158439|ref|NP_571538.1| nuclear receptor subfamily 5 group A member 2 [Danio rerio]
gi|2429328|gb|AAC60274.1| FTZ-F1 homolog [Danio rerio]
Length = 516
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +ES+QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 434 LDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLY 493
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 494 YKHLNGDVPCNNLLIEML 511
>gi|297259762|ref|XP_001110097.2| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Macaca
mulatta]
Length = 462
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 286 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 345
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GSS
Sbjct: 346 IKLFGMAKIDNLLQEMLLGGSS 367
>gi|67463981|pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 163 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 222
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 223 YKHLNGDVPYNNLLIEML 240
>gi|327200627|pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
gi|327200629|pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 175 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 234
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 235 YKHLNGDVPYNNLLIEML 252
>gi|46575916|ref|NP_032287.2| hepatocyte nuclear factor 4-alpha [Mus musculus]
gi|148886625|sp|P49698.2|HNF4A_MOUSE RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|24657895|gb|AAH39220.1| Hepatic nuclear factor 4, alpha [Mus musculus]
gi|62635464|gb|AAX90602.1| hepatic nuclear factor 4 alpha [Mus musculus]
Length = 474
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSA 379
>gi|73535702|pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 174 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 233
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 234 YKHLNGDVPYNNLLIEML 251
>gi|220773|dbj|BAA01411.1| hepatocyte nuclear factor 4 [Rattus norvegicus]
Length = 465
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSA 370
>gi|56372|emb|CAA40412.1| transcription factor HNF-4 [Rattus rattus]
Length = 455
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSA 370
>gi|148886626|sp|P22449.3|HNF4A_RAT RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
Length = 474
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSA 379
>gi|148674390|gb|EDL06337.1| hepatic nuclear factor 4, alpha, isoform CRA_b [Mus musculus]
Length = 465
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSA 370
>gi|400153986|ref|NP_071516.2| hepatocyte nuclear factor 4-alpha isoform 1 [Rattus norvegicus]
gi|149042998|gb|EDL96572.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Rattus
norvegicus]
Length = 474
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSA 379
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ ++ + Q +LE+Y QY S+ RFG+LLL LP L++++ Q+IEQ+
Sbjct: 288 DAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPVLQSITWQMIEQIQ 346
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FV+L G I+ L+++MLL GSS
Sbjct: 347 FVKLFGMAKIDNLLQEMLLGGSS 369
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ ++ + Q +LE+Y QY S+ RFG+LLL LP L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPVLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FV+L G I+ L+++MLL GSS
Sbjct: 348 FVKLFGMAKIDNLLQEMLLGGSS 370
>gi|392583958|ref|NP_001254822.1| nuclear receptor subfamily 5 group A member 2 [Sus scrofa]
gi|380710168|gb|AFD98843.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Sus
scrofa]
Length = 443
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 361 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 420
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 421 YKHLNGDVPYNNLLIEML 438
>gi|511934|dbj|BAA06101.1| hepatocyte nuclear factor 4 [Mus musculus]
gi|1093944|prf||2105186A hepatocyte nuclear factor 4
Length = 465
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGSA 370
>gi|71559109|gb|AAZ38141.1| USP/RXR [Chimarra marginata]
Length = 330
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ I+++++K LE++CRT+ + RF LLLRLP+LR++S + E LFF
Sbjct: 250 DLRGVKGRQEIDAIRDKVYALLEDHCRTRRAGEEGRFASLLLRLPALRSISLKCFEHLFF 309
Query: 62 VRLVGKTPIETLI 74
RL G IET +
Sbjct: 310 FRLFGDVSIETCL 322
>gi|222431985|gb|ACM50919.1| HNF4alpha10 [Mus musculus]
Length = 403
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 273 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 331
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 332 FIKLFGMAKIDNLLQEMLLGGSA 354
>gi|410928927|ref|XP_003977851.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Takifugu rubripes]
Length = 454
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ ++ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 288 DAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDCRGRFGELLLLLPTLQSITWQMIEQIQF 347
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
V+L G I+ L+++MLL GS+ P+
Sbjct: 348 VKLFGMAKIDNLLQEMLLGGSANEAPH 374
>gi|354493667|ref|XP_003508961.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Cricetulus griseus]
Length = 474
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSA 379
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 6 LSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
L D+ + SLQ+ SQ L EY YP R +LL L ++R VSS I +LFF +
Sbjct: 311 LKDLPAVASLQDHSQAVLNEYITRLYPGDTTRSNQLLQSLSAVRNVSSTTIVELFFRATI 370
Query: 66 GKTPIETLIRDMLLSG 81
G PIE +I DM SG
Sbjct: 371 GDIPIERIISDMYRSG 386
>gi|354493669|ref|XP_003508962.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Cricetulus griseus]
gi|344253293|gb|EGW09397.1| Hepatocyte nuclear factor 4-alpha [Cricetulus griseus]
Length = 464
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 357 FIKLFGMAKIDNLLQEMLLGGSA 379
>gi|400154015|ref|NP_001257862.1| hepatocyte nuclear factor 4-alpha isoform 3 [Rattus norvegicus]
Length = 439
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 273 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 331
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 332 FIKLFGMAKIDNLLQEMLLGGSA 354
>gi|222431987|gb|ACM50920.1| HNF4alpha11 [Mus musculus]
Length = 413
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 273 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 332
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GS+
Sbjct: 333 IKLFGMAKIDNLLQEMLLGGSA 354
>gi|326924950|ref|XP_003208685.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Meleagris gallopavo]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPCNNLLIEML 490
>gi|410928929|ref|XP_003977852.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Takifugu rubripes]
Length = 441
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ ++ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 275 DAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDCRGRFGELLLLLPTLQSITWQMIEQIQF 334
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
V+L G I+ L+++MLL GS+ P+
Sbjct: 335 VKLFGMAKIDNLLQEMLLGGSANEAPH 361
>gi|1947098|gb|AAD03155.1| alpha1-fetoprotein transcription factor [Homo sapiens]
Length = 500
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 418 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 477
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 478 YKHLNGDVPYNNLLIEML 495
>gi|400153996|ref|NP_001257860.1| hepatocyte nuclear factor 4-alpha isoform 2 [Rattus norvegicus]
Length = 449
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 273 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 332
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GS+
Sbjct: 333 IKLFGMAKIDNLLQEMLLGGSA 354
>gi|222431981|gb|ACM50917.1| HNF4alpha11 [Rattus norvegicus]
Length = 413
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 273 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 332
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GS+
Sbjct: 333 IKLFGMAKIDNLLQEMLLGGSA 354
>gi|149591564|ref|XP_001507309.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Ornithorhynchus
anatinus]
Length = 419
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 57/82 (69%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD S I+ ++ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 298 DAKGLSDPSKIKRMRYQVQVSLEDYISDRQHDSRGRFGELLLLLPALQSITWQMIEQIQF 357
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
V+L G ++ L+++MLL G+S
Sbjct: 358 VKLFGVAKVDNLLQEMLLGGTS 379
>gi|222431979|gb|ACM50916.1| HNF4alpha10 [Rattus norvegicus]
Length = 403
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 273 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 332
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
++L G I+ L+++MLL GS+
Sbjct: 333 IKLFGMAKIDNLLQEMLLGGSA 354
>gi|296230345|ref|XP_002760663.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Callithrix jacchus]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPYNNLLIEML 490
>gi|451172094|ref|NP_001263393.1| nuclear receptor subfamily 5 group A member 2 isoform 3 [Homo
sapiens]
gi|194385660|dbj|BAG65205.1| unnamed protein product [Homo sapiens]
gi|221040206|dbj|BAH14884.1| unnamed protein product [Homo sapiens]
Length = 469
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 387 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 446
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 447 YKHLNGDVPYNNLLIEML 464
>gi|149042999|gb|EDL96573.1| hepatocyte nuclear factor 4, alpha, isoform CRA_b [Rattus
norvegicus]
Length = 452
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 276 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 334
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 335 FIKLFGMAKIDNLLQEMLLGGSA 357
>gi|227511|prf||1705219A hepatocyte nuclear factor 4
Length = 455
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+ +MLL GS+
Sbjct: 348 FIKLFGMAKIDNLLEEMLLGGSA 370
>gi|126352552|ref|NP_001075264.1| nuclear receptor subfamily 5 group A member 2 [Equus caballus]
gi|11493783|gb|AAG35649.1|AF203913_1 steroidogenic factor 2 [Equus caballus]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPYNNLLIEML 490
>gi|4504343|ref|NP_003813.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Homo
sapiens]
gi|114571712|ref|XP_525014.2| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Pan troglodytes]
gi|397505096|ref|XP_003823110.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Pan paniscus]
gi|402857721|ref|XP_003893394.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Papio anubis]
gi|426333172|ref|XP_004028158.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Gorilla gorilla gorilla]
gi|5002242|gb|AAD37378.1|AF146343_1 CYP7A promoter binding factor [Homo sapiens]
gi|10441619|gb|AAG17124.1|AF190464_1 hepatocytic transcription factor B1F [Homo sapiens]
gi|3916048|gb|AAC78727.1| hepatocytic transcription factor [Homo sapiens]
gi|110002573|gb|AAI18653.1| Nuclear receptor subfamily 5, group A, member 2 [Homo sapiens]
gi|110002615|gb|AAI18572.1| Nuclear receptor subfamily 5, group A, member 2 [Homo sapiens]
gi|119611712|gb|EAW91306.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_b
[Homo sapiens]
gi|307685609|dbj|BAJ20735.1| nuclear receptor subfamily 5, group A, member 2 [synthetic
construct]
gi|325495525|gb|ADZ17368.1| liver nuclear receptor homolog-1 variant 2 [Homo sapiens]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPYNNLLIEML 490
>gi|410986212|ref|XP_004001611.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 5 group
A member 2 [Felis catus]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPYNNLLIEML 490
>gi|355746061|gb|EHH50686.1| hypothetical protein EGM_01552 [Macaca fascicularis]
Length = 513
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 431 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 490
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 491 YKHLNGDVPYNNLLIEML 508
>gi|297281162|ref|XP_002802036.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Macaca mulatta]
Length = 469
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 387 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 446
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 447 YKHLNGDVPYNNLLIEML 464
>gi|395531065|ref|XP_003767603.1| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Sarcophilus harrisii]
Length = 502
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 420 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLY 479
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 480 YKHLNGDVPCNNLLIEML 497
>gi|148674389|gb|EDL06336.1| hepatic nuclear factor 4, alpha, isoform CRA_a [Mus musculus]
Length = 452
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 276 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 334
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 335 FIKLFGMAKIDNLLQEMLLGGSA 357
>gi|109018950|ref|XP_001110202.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Macaca mulatta]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPYNNLLIEML 490
>gi|380710166|gb|AFD98842.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Sus
scrofa]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPYNNLLIEML 490
>gi|390477376|ref|XP_003735285.1| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Callithrix jacchus]
Length = 501
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 419 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 478
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 479 YKHLNGDVPYNNLLIEML 496
>gi|307168984|gb|EFN61863.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 279
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D S IE+LQ+++Q L + R Q P+ P RFG+LLL LP LR V + +E ++F R
Sbjct: 204 GLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRMVPASRVELIYFHRT 263
Query: 65 VGKTPIETLIRDM 77
+G TP+E ++ DM
Sbjct: 264 IGNTPMEKVLCDM 276
>gi|395838917|ref|XP_003792352.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Otolemur garnettii]
Length = 495
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 413 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 472
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 473 YKHLNGDVPYNNLLIEML 490
>gi|216409746|dbj|BAH02310.1| nuclear receptor subfamily 5, group A [Homo sapiens]
Length = 501
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 419 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 478
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 479 YKHLNGDVPYNNLLIEML 496
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia guttata]
Length = 431
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD S I+ ++ + Q +LE+Y QY S+ RFG+LLL LP L++++ Q+IEQ+
Sbjct: 265 DAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPVLQSITWQMIEQIQ 323
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FV+L G I+ L+++MLL GSS
Sbjct: 324 FVKLFGMAKIDNLLQEMLLGGSS 346
>gi|449268136|gb|EMC79006.1| Nuclear receptor subfamily 5 group A member 2 [Columba livia]
Length = 501
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 419 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLY 478
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 479 YKHLNGDVPCNNLLIEML 496
>gi|148886627|sp|Q91766.2|HNF4A_XENLA RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1
Length = 464
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD + I+ ++ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 297 DAKGLSDPTKIKRMRYQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 355
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
FV+L G I+ L+++MLL GS+
Sbjct: 356 FVKLFGMAKIDNLLQEMLLGGSA 378
>gi|449507916|ref|XP_002193005.2| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Taeniopygia guttata]
Length = 501
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 419 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLY 478
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 479 YKHLNGDVPCNNLLIEML 496
>gi|397505098|ref|XP_003823111.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 3
[Pan paniscus]
Length = 501
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 419 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 478
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 479 YKHLNGDVPYNNLLIEML 496
>gi|345803057|ref|XP_547371.3| PREDICTED: nuclear receptor subfamily 5 group A member 2 [Canis
lupus familiaris]
Length = 469
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 387 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 446
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 447 YKHLNGDVPYNNLLIEML 464
>gi|334321860|ref|XP_001377433.2| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Monodelphis domestica]
Length = 542
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 460 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLY 519
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 520 YKHLNGDVPCNNLLIEML 537
>gi|355558912|gb|EHH15692.1| hypothetical protein EGK_01814 [Macaca mulatta]
Length = 540
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 458 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 517
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 518 YKHLNGDVPYNNLLIEML 535
>gi|216409714|dbj|BAH02294.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 465
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 289 DAKGLSDPGRIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 347
Query: 61 FVRLVGKTPIETLIRDMLLSGS 82
F++L G I+ L+++MLL GS
Sbjct: 348 FIKLFGMAKIDNLLQEMLLGGS 369
>gi|189239605|ref|XP_968613.2| PREDICTED: similar to hepatocyte nuclear factor 4 [Tribolium
castaneum]
Length = 405
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+A GLS+ + I++L+ + Q LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 325 NAKGLSEPARIKALRYQIQINLEDYISDRQYDSRG-RFGELLLTLPALQSITWQMIEQIQ 383
Query: 61 FVRLVGKTPIETLIRDMLLSG 81
F +L G I++L+++MLL G
Sbjct: 384 FAKLFGVAHIDSLLQEMLLGG 404
>gi|395838915|ref|XP_003792351.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Otolemur garnettii]
Length = 541
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 459 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 518
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 519 YKHLNGDVPYNNLLIEML 536
>gi|301757645|ref|XP_002914659.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Ailuropoda melanoleuca]
Length = 541
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 459 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 518
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 519 YKHLNGDVPYNNLLIEML 536
>gi|431921891|gb|ELK19094.1| Nuclear receptor subfamily 5 group A member 2 [Pteropus alecto]
Length = 95
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 13 IDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISLQAEEYLY 72
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 73 YKHLNGDVPYNNLLIEML 90
>gi|194385626|dbj|BAG65188.1| unnamed protein product [Homo sapiens]
Length = 501
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 419 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 478
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 479 YKHLNGDVPYNNLLIEML 496
>gi|74180836|dbj|BAE25624.1| unnamed protein product [Mus musculus]
Length = 470
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRT-QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y QY S+ RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 298 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG-RFGELLLLLPTLQSITWQMIEQIQ 356
Query: 61 FVRLVGKTPIETLIRDMLLSGSS 83
F++L G I+ L+++MLL GS+
Sbjct: 357 FIKLFGMARIDNLLQEMLLGGSA 379
>gi|45545405|ref|NP_995582.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Homo
sapiens]
gi|114571710|ref|XP_001142695.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Pan troglodytes]
gi|397505094|ref|XP_003823109.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Pan paniscus]
gi|426333170|ref|XP_004028157.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Gorilla gorilla gorilla]
gi|7676156|sp|O00482.2|NR5A2_HUMAN RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=Alpha-1-fetoprotein transcription factor;
AltName: Full=B1-binding factor; Short=hB1F; AltName:
Full=CYP7A promoter-binding factor; AltName:
Full=Hepatocytic transcription factor; AltName:
Full=Liver receptor homolog 1; Short=LRH-1
gi|4590402|gb|AAD26565.1|AF124247_1 hepatocytic transcription factor hB1F-2 [Homo sapiens]
gi|10441620|gb|AAG17125.1|AF190464_2 hepatocytic transcription factor isoform B1F-2 [Homo sapiens]
gi|119611714|gb|EAW91308.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_d
[Homo sapiens]
Length = 541
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 459 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 518
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 519 YKHLNGDVPYNNLLIEML 536
>gi|281351212|gb|EFB26796.1| hypothetical protein PANDA_002579 [Ailuropoda melanoleuca]
Length = 520
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L+
Sbjct: 438 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLY 497
Query: 61 FVRLVGKTPIETLIRDML 78
+ L G P L+ +ML
Sbjct: 498 YKHLNGDVPYNNLLIEML 515
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,274,293,894
Number of Sequences: 23463169
Number of extensions: 39625990
Number of successful extensions: 80894
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2939
Number of HSP's successfully gapped in prelim test: 458
Number of HSP's that attempted gapping in prelim test: 77853
Number of HSP's gapped (non-prelim): 3473
length of query: 92
length of database: 8,064,228,071
effective HSP length: 62
effective length of query: 30
effective length of database: 6,609,511,593
effective search space: 198285347790
effective search space used: 198285347790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)