BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7203
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+HIESLQEKSQCALEEYCRTQYP+QP RFGKLLLRLPSLRTVSSQVIEQLFF
Sbjct: 453 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 512
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
VRLVGKTPIETLIRDMLLSG+SFSWPY+ SM
Sbjct: 513 VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM 543
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFNWPYM 411
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 86/89 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 320 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 408
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 321 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 380
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 381 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 409
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 332 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 391
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 392 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 420
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 331 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 391 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 419
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +HIESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 330 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 389
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMN 90
VRLVGKTPIETLIRDMLLSGSSF+WPYM+
Sbjct: 390 VRLVGKTPIETLIRDMLLSGSSFNWPYMS 418
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/88 (87%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD+ HIE LQEKSQCALEEY R+QYP+QP RFGKLLLRLP+LR VSS VIEQLFF
Sbjct: 299 DACGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 359 VRLVGKTPIETLIRDMLLSGSSFNWPYM 386
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 82/88 (93%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSDV+H+ES+QEKSQCALEEY R QYP+QP RFG+LLLRLPSLR VSS VIEQLFF
Sbjct: 299 DAMGLSDVAHVESIQEKSQCALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFF 358
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETL+RDMLLSGSS++WPYM
Sbjct: 359 VRLVGKTPIETLLRDMLLSGSSYNWPYM 386
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 125 bits (315), Expect = 6e-29, Method: Composition-based stats.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 301 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 360
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 361 MRLVGKTPIETLIRDMLLSGSTFNWPY 387
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 125 bits (315), Expect = 7e-29, Method: Composition-based stats.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 301 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 360
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 361 MRLVGKTPIETLIRDMLLSGSTFNWPY 387
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSD +H+ESLQEK+Q AL EY R QYPSQP RFG+LLLRLP+LR V + +I QLFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPY 88
+RLVGKTPIETLIRDMLLSGS+F+WPY
Sbjct: 374 MRLVGKTPIETLIRDMLLSGSTFNWPY 400
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 439 FKLIGDTPIDTFLMEML 455
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 347 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 407 FKLIGDTPIDTFLMEML 423
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ S +E+L+E+ +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 296 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 355
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 356 FKLIGDTPIDTFLMEML 372
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ + +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 387 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 447 FKLIGDTPIDTFLMEML 463
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +ESL+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 444 FKLIGDTPIDTFLMEML 460
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 405 DSKGLSNPLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 464
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 465 FKLIGDTPIDTFLMEML 481
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 440 FKLIGDTPIDTFLMEML 456
>sp|Q90416|RXRGA_DANRE Retinoic acid receptor RXR-gamma-A OS=Danio rerio GN=rxrga PE=2
SV=2
Length = 441
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK +LE Y + YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 358 DAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 418 FKLIGDTPIDTFLMEML 434
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E+L+EK LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI++ + +ML
Sbjct: 440 FKLIGDTPIDSFLMEML 456
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ V +E L+EK +LEEY +T+YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 413 FKLIGDQPIDTFLMEML 429
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E+L+EK +LE Y + +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 369 DAKGLSNSLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 429 FKLIGDTPIDTFLMEML 445
>sp|Q5TJF7|RXRB_CANFA Retinoic acid receptor RXR-beta OS=Canis familiaris GN=RXRB PE=3
SV=1
Length = 533
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 510 FKLIGDTPIDTFLMEML 526
>sp|P28702|RXRB_HUMAN Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2
Length = 533
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 510 FKLIGDTPIDTFLMEML 526
>sp|Q90417|RXRBB_DANRE Retinoic acid receptor RXR-beta-B OS=Danio rerio GN=rxrbb PE=2 SV=1
Length = 422
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 56/79 (70%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 342 DAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 401
Query: 62 VRLVGKTPIETLIRDMLLS 80
+L+G TPI+T + +ML S
Sbjct: 402 FKLIGNTPIDTFLMEMLES 420
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 56/77 (72%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GL+ V +E L+EK +LEEY +++YP +P RF KLLLRLP+LR++ + +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 62 VRLVGKTPIETLIRDML 78
+L+G PI+T + +ML
Sbjct: 413 FKLIGDQPIDTFLMEML 429
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS S +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 388 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 448 FKLIGDTPIDTFLMEML 464
>sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (Fragment) OS=Rattus norvegicus
GN=Rxrb PE=2 SV=1
Length = 458
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 375 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 435 FKLIGDTPIDTFLMEML 451
>sp|P28704|RXRB_MOUSE Retinoic acid receptor RXR-beta OS=Mus musculus GN=Rxrb PE=2 SV=2
Length = 520
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLS+ +E L+EK +LE YC+ +YP Q RF KLLLRLP+LR++ + +E LFF
Sbjct: 437 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 496
Query: 62 VRLVGKTPIETLIRDML 78
+L+G TPI+T + +ML
Sbjct: 497 FKLIGDTPIDTFLMEML 513
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 335 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 394
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 395 IGNTPMEKLLCDMF 408
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQ +RFGKLLL LPSLR +SS+ +E LFF +
Sbjct: 336 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKT 395
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 396 IGNTPMEKLLCDMF 409
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ S I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+VS IE++FF + +G
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIGN 380
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 381 VPITRLLSDMYKS 393
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR++S IE++FF + +G
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 68 TPIETLIRDMLLS 80
PI L+ DM S
Sbjct: 370 VPITRLLSDMYKS 382
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL 64
GL D H+E+LQ++SQ L ++ + +PSQP+RFGKLLL LPSLR ++++ IE LFF +
Sbjct: 320 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKT 379
Query: 65 VGKTPIETLIRDML 78
+G TP+E L+ DM
Sbjct: 380 IGNTPMEKLLCDMF 393
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 50/73 (68%)
Query: 8 DVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK 67
+ + I +LQ+++Q L Y T+YP+QP RFGKLLL LP+LR+++ IE++FF + +G
Sbjct: 311 NAAAISALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGN 370
Query: 68 TPIETLIRDMLLS 80
PI ++ DM S
Sbjct: 371 VPITRVLSDMYKS 383
>sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens
GN=NR2C2 PE=1 SV=1
Length = 596
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QEK+Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 504 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 563
Query: 62 VRLVGKTPIETLI 74
L+G I+++I
Sbjct: 564 TGLIGNVSIDSII 576
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,356,653
Number of Sequences: 539616
Number of extensions: 955012
Number of successful extensions: 1873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 231
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)