Query psy7203
Match_columns 92
No_of_seqs 109 out of 787
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:49:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cjw_A COUP transcription fact 99.9 2.4E-22 8.2E-27 137.3 9.5 92 1-92 153-244 (244)
2 3f5c_B Nuclear receptor subfam 99.8 2.8E-21 9.6E-26 134.4 7.7 81 1-81 187-267 (268)
3 3v3e_B Nuclear receptor subfam 99.8 4.5E-21 1.5E-25 132.6 7.8 84 1-84 164-249 (257)
4 1fcy_A RAR-gamma-1, retinoic a 99.8 1.1E-20 3.8E-25 128.6 8.9 79 1-79 158-236 (236)
5 3p0u_A Nuclear receptor subfam 99.8 3.7E-21 1.3E-25 132.2 6.2 82 1-82 156-237 (249)
6 3plz_A FTZ-F1 related protein; 99.8 1.1E-20 3.8E-25 130.5 8.5 82 1-82 175-256 (257)
7 3ltx_A Estrogen receptor; cons 99.8 1.2E-20 4.1E-25 129.1 8.2 82 1-82 151-232 (243)
8 3vi8_A Peroxisome proliferator 99.8 2E-20 6.8E-25 130.4 9.1 80 1-80 191-271 (273)
9 3kmr_A Retinoic acid receptor 99.8 1.8E-20 6.3E-25 130.0 8.7 82 1-82 182-263 (266)
10 1hg4_A Ultraspiracle; nuclear 99.8 3.4E-20 1.2E-24 128.7 10.1 90 1-90 189-278 (279)
11 2e2r_A Estrogen-related recept 99.8 4.3E-20 1.5E-24 126.4 9.0 81 1-81 162-242 (244)
12 3ilz_A Thyroid hormone recepto 99.8 3.9E-20 1.3E-24 128.3 8.4 81 1-81 184-265 (267)
13 3k6p_A Steroid hormone recepto 99.8 2.1E-20 7.1E-25 128.4 6.9 81 1-81 162-246 (248)
14 2iz2_A FTZ-F1 alpha, nuclear h 99.8 5.7E-20 1.9E-24 125.9 8.9 81 1-81 162-242 (243)
15 1g2n_A Ultraspiracle protein; 99.8 7.5E-20 2.6E-24 126.3 9.4 84 1-84 175-258 (264)
16 1ymt_A Steroidogenic factor 1; 99.8 9.4E-20 3.2E-24 124.7 8.3 82 1-82 164-245 (246)
17 3tx7_B Nuclear receptor subfam 99.8 9.2E-20 3.1E-24 131.1 7.8 82 1-82 270-351 (352)
18 1xdk_B RAR-beta, retinoic acid 99.8 2E-19 6.8E-24 126.7 9.1 82 1-82 185-266 (303)
19 3dzy_D Peroxisome proliferator 99.8 1.8E-19 6E-24 131.9 9.1 80 1-80 337-417 (419)
20 1osh_A BIle acid receptor; nuc 99.8 3E-19 1E-23 121.1 9.0 79 1-80 153-231 (232)
21 1pdu_A DHR38, nuclear hormone 99.8 1E-19 3.5E-24 124.9 6.5 83 2-84 160-244 (244)
22 2nxx_A Ultraspiracle (USP, NR2 99.8 9.8E-20 3.3E-24 123.8 6.2 82 1-82 152-233 (235)
23 3u9q_A Peroxisome proliferator 99.8 3.4E-19 1.2E-23 123.9 9.0 80 1-80 188-268 (269)
24 2p1t_A Retinoic acid receptor 99.8 4.5E-19 1.5E-23 120.6 8.6 82 1-82 156-237 (240)
25 3b0t_A Vitamin D3 receptor; nu 99.8 1.8E-19 6.3E-24 123.6 6.5 79 1-79 172-254 (254)
26 3ipq_A Oxysterols receptor LXR 99.8 5.9E-19 2E-23 123.1 8.9 80 1-81 203-282 (283)
27 3dzy_A Retinoic acid receptor 99.8 2.1E-19 7.2E-24 133.1 6.6 81 1-81 383-463 (467)
28 1nq7_A Nuclear receptor ROR-be 99.8 7.1E-19 2.4E-23 120.4 7.4 78 1-79 163-244 (244)
29 2hc4_A Vitamin D receptor; alp 99.8 7.3E-19 2.5E-23 123.9 7.6 82 1-82 218-301 (302)
30 1nrl_A Orphan nuclear receptor 99.8 1.2E-18 4.2E-23 123.6 8.6 80 1-81 233-314 (316)
31 2o4j_A Vitamin D3 receptor; nu 99.8 8.7E-19 3E-23 122.9 7.7 82 1-82 175-260 (292)
32 2r40_D Ecdysone receptor, 20-h 99.8 1.3E-18 4.5E-23 120.5 8.4 79 2-81 182-263 (266)
33 1lbd_A RXR_LBD, retinoid X rec 99.8 7.4E-19 2.5E-23 122.2 6.6 82 1-82 198-279 (282)
34 3gyt_A Nuclear hormone recepto 99.8 2.2E-19 7.4E-24 123.7 3.6 79 1-81 161-243 (244)
35 1n83_A Nuclear receptor ROR-al 99.8 6.5E-19 2.2E-23 122.4 6.1 84 1-87 178-265 (270)
36 3oll_A Estrogen receptor beta; 99.8 1.2E-18 4.1E-23 118.7 6.2 81 1-81 148-238 (240)
37 1xvp_B Orphan nuclear receptor 99.7 1.5E-18 5.3E-23 118.5 6.2 77 1-79 168-246 (246)
38 2nxx_E Ecdysone receptor (ECR, 99.7 6.1E-18 2.1E-22 115.9 8.5 81 2-83 166-247 (248)
39 1ovl_A Orphan nuclear receptor 99.7 1.3E-17 4.5E-22 115.4 8.1 79 2-80 187-267 (271)
40 3l0l_A Nuclear receptor ROR-ga 99.7 2.2E-18 7.6E-23 118.3 4.1 76 1-79 169-248 (248)
41 1xpc_A Estrogen receptor; nucl 99.7 4.2E-18 1.4E-22 116.6 5.2 79 4-82 161-242 (248)
42 1pzl_A Hepatocyte nuclear fact 99.7 3E-17 1E-21 110.9 9.0 81 1-81 156-236 (237)
43 2ocf_A Estrogen receptor; estr 99.7 8.7E-18 3E-22 118.3 6.0 79 4-82 170-251 (298)
44 1z5x_E Ecdysone receptor ligan 99.7 3E-17 1E-21 116.2 8.7 79 2-81 230-309 (310)
45 3up3_A Acedaf-12; ligand bindi 99.7 3.6E-18 1.2E-22 117.2 3.5 76 3-80 163-242 (243)
46 1yye_A ER-beta, estrogen recep 99.7 1.9E-17 6.5E-22 114.8 6.1 81 1-81 146-236 (268)
47 1l2j_A Estrogen receptor beta; 99.7 2.2E-17 7.6E-22 114.6 5.3 82 1-82 174-265 (271)
48 3vhv_A Mineralocorticoid recep 99.7 5.5E-17 1.9E-21 112.1 6.9 80 2-81 158-243 (260)
49 3mnp_A Glucocorticoid receptor 99.6 5.9E-16 2E-20 107.0 7.7 80 2-81 160-244 (261)
50 3vhu_A Mineralocorticoid recep 99.6 3.2E-16 1.1E-20 110.2 6.3 80 2-81 192-277 (294)
51 3cqv_A Nuclear receptor subfam 99.6 5.8E-16 2E-20 102.9 7.0 65 1-65 134-198 (199)
52 1t7r_A Androgen receptor; nucl 99.6 7.5E-16 2.6E-20 106.7 5.6 80 2-81 167-252 (269)
53 3n00_A REV-ERBA-alpha; reverba 99.6 6.6E-16 2.3E-20 106.0 5.0 65 1-65 179-243 (245)
54 1sqn_A PR, progesterone recept 99.6 2E-15 6.9E-20 104.2 5.2 78 2-81 159-244 (261)
55 2kxo_A Cell division topologic 40.0 14 0.00048 21.4 1.6 28 2-29 29-57 (95)
56 3e9v_A Protein BTG2; B-cell tr 37.7 46 0.0016 20.0 3.7 32 5-36 21-53 (120)
57 3rau_A Tyrosine-protein phosph 35.5 28 0.00096 24.6 2.9 31 20-50 25-55 (363)
58 2ful_A EIF-5, eukaryotic trans 33.3 93 0.0032 19.7 5.1 50 13-62 83-132 (177)
59 3ku7_A MINE, cell division top 31.8 43 0.0015 18.7 2.7 21 8-28 34-54 (80)
60 2fm9_A Cell invasion protein S 31.0 1E+02 0.0035 20.2 4.7 40 4-43 92-131 (215)
61 2fm8_C Cell invasion protein S 30.8 1.2E+02 0.0041 20.2 5.2 41 4-44 118-158 (240)
62 3c3r_A Programmed cell death 6 30.0 46 0.0016 23.5 3.2 32 20-51 39-73 (380)
63 2z15_A Protein TOB1; human TOB 28.1 66 0.0023 19.6 3.3 31 7-37 27-58 (130)
64 4abx_A DNA repair protein RECN 27.9 89 0.0031 19.4 4.1 35 21-56 108-142 (175)
65 1y66_A Engrailed homeodomain; 24.0 76 0.0026 15.7 3.4 20 10-29 14-33 (52)
66 2kv2_A Bloom syndrome protein; 23.5 99 0.0034 16.8 3.7 30 4-34 55-84 (85)
67 1g2y_A Hepatocyte nuclear fact 20.8 76 0.0026 14.6 2.0 16 10-25 3-18 (32)
68 1paq_A Translation initiation 20.0 1.8E+02 0.006 18.4 5.3 50 13-62 106-156 (189)
No 1
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=137.34 Aligned_cols=92 Identities=87% Similarity=1.340 Sum_probs=83.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++.+..|.+++++|+.|||.+
T Consensus 153 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 232 (244)
T 3cjw_A 153 SDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLS 232 (244)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHSCHHHHHHHHTHHHHTTCCGGGTHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHhhhHHHHHHHHhhcccCCCcHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q psy7203 81 GSSFSWPYMNSM 92 (92)
Q Consensus 81 ~~~~~~~~~~~~ 92 (92)
+.+.+||++..+
T Consensus 233 ~~~~~~~~~~~~ 244 (244)
T 3cjw_A 233 GSSFNWPYMAIQ 244 (244)
T ss_dssp CCCCC-------
T ss_pred CCCCCCccccCC
Confidence 999999998653
No 2
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.84 E-value=2.8e-21 Score=134.40 Aligned_cols=81 Identities=32% Similarity=0.393 Sum_probs=78.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++||++++|.+++++||.|||++
T Consensus 187 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g~~~i~~Ll~Eml~a 266 (268)
T 3f5c_B 187 PDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCA 266 (268)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHHHHHHHHHHTTSCSSHHHHHHTHHHHCSCCHHHHHHHHTTS
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy7203 81 G 81 (92)
Q Consensus 81 ~ 81 (92)
+
T Consensus 267 ~ 267 (268)
T 3f5c_B 267 K 267 (268)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.84 E-value=4.5e-21 Score=132.61 Aligned_cols=84 Identities=26% Similarity=0.490 Sum_probs=77.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHh--hCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRT--QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 78 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~--~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml 78 (92)
.|++||++..+|+++|++++.+|++||.. ++|+++.||++||++||+||+++.++++++|++|+.|.+++++|+.|||
T Consensus 164 sd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~~~~~~Ll~Emf 243 (257)
T 3v3e_B 164 TDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIF 243 (257)
T ss_dssp SCCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHH
Confidence 38999999999999999999999999964 4789999999999999999999999999999999999999999999999
Q ss_pred hCCCCC
Q psy7203 79 LSGSSF 84 (92)
Q Consensus 79 ~~~~~~ 84 (92)
.+.-+|
T Consensus 244 ~~~Lp~ 249 (257)
T 3v3e_B 244 MDTLPF 249 (257)
T ss_dssp HHHCCC
T ss_pred HhhCcc
Confidence 766544
No 4
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.84 E-value=1.1e-20 Score=128.62 Aligned_cols=79 Identities=32% Similarity=0.494 Sum_probs=77.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHh
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLL 79 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~ 79 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++++..|++++++|+.|||+
T Consensus 158 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 158 GDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLE 236 (236)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.83 E-value=3.7e-21 Score=132.16 Aligned_cols=82 Identities=37% Similarity=0.669 Sum_probs=78.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.+++++++|+|++|.+++++|+.|||+.
T Consensus 156 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~i~~~~~e~l~f~~~~g~~~i~~Ll~eml~~ 235 (249)
T 3p0u_A 156 PDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKM 235 (249)
T ss_dssp SCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHHHHHHTTHHHHHTSCHHHHHHHHCCSSHHHHCHHHHHHHHTTC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHeeeecccCCCCHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
++
T Consensus 236 ~~ 237 (249)
T 3p0u_A 236 ET 237 (249)
T ss_dssp --
T ss_pred Cc
Confidence 63
No 6
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.83 E-value=1.1e-20 Score=130.46 Aligned_cols=82 Identities=37% Similarity=0.645 Sum_probs=78.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.+++++++|++++|.+++++|+.|||++
T Consensus 175 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~i~~Ll~Eml~~ 254 (257)
T 3plz_A 175 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHA 254 (257)
T ss_dssp TTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCSHHHHHHTC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 255 k~ 256 (257)
T 3plz_A 255 KR 256 (257)
T ss_dssp --
T ss_pred cc
Confidence 63
No 7
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.83 E-value=1.2e-20 Score=129.12 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=79.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++.+.+|.+++++|+.|||++
T Consensus 151 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~ 230 (243)
T 3ltx_A 151 AEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEMLDA 230 (243)
T ss_dssp SCCSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 231 ~~ 232 (243)
T 3ltx_A 231 QD 232 (243)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 8
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.83 E-value=2e-20 Score=130.39 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=75.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhh-hcCCCChhHHHHHHHh
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVR-LVGKTPIETLIRDMLL 79 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~-~~g~~~i~~Ll~Eml~ 79 (92)
+|++||+++.+|+++|++++.+|++|+..+||+++.||++||++||+||+++.+|+++++++| ..|.+++++|+.|||.
T Consensus 191 pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~~~~~~~Ll~Emf~ 270 (273)
T 3vi8_A 191 GDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYR 270 (273)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHT
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999998555 5789999999999996
Q ss_pred C
Q psy7203 80 S 80 (92)
Q Consensus 80 ~ 80 (92)
.
T Consensus 271 d 271 (273)
T 3vi8_A 271 D 271 (273)
T ss_dssp T
T ss_pred h
Confidence 4
No 9
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.83 E-value=1.8e-20 Score=129.97 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=77.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.+++++++++|.+|++++++|+.|||++
T Consensus 182 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~i~~~~~e~l~~~k~~~~~~~~~Ll~Eml~~ 261 (266)
T 3kmr_A 182 GDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLEN 261 (266)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 262 ~~ 263 (266)
T 3kmr_A 262 SE 263 (266)
T ss_dssp --
T ss_pred CC
Confidence 64
No 10
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.83 E-value=3.4e-20 Score=128.72 Aligned_cols=90 Identities=32% Similarity=0.516 Sum_probs=82.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++++++|.+++++|+.|||++
T Consensus 189 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~ 268 (279)
T 1hg4_A 189 PDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEA 268 (279)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCSSCHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy7203 81 GSSFSWPYMN 90 (92)
Q Consensus 81 ~~~~~~~~~~ 90 (92)
+.+..|+.+.
T Consensus 269 ~~~~~~~~~~ 278 (279)
T 1hg4_A 269 PPPPGLAMKL 278 (279)
T ss_dssp CCCCC-----
T ss_pred CCCcccCCCC
Confidence 9877777653
No 11
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.82 E-value=4.3e-20 Score=126.40 Aligned_cols=81 Identities=32% Similarity=0.552 Sum_probs=78.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++++..|.+++++|+.|||++
T Consensus 162 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~ 241 (244)
T 2e2r_A 162 SDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEA 241 (244)
T ss_dssp CCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHTS
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy7203 81 G 81 (92)
Q Consensus 81 ~ 81 (92)
+
T Consensus 242 ~ 242 (244)
T 2e2r_A 242 K 242 (244)
T ss_dssp C
T ss_pred c
Confidence 6
No 12
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.82 E-value=3.9e-20 Score=128.25 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCCh-hHHHHHHHh
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPI-ETLIRDMLL 79 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i-~~Ll~Eml~ 79 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.+++++++++|..|++++ ++|+.|||+
T Consensus 184 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~~~~~~~~Ll~Em~~ 263 (267)
T 3ilz_A 184 TDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLHMKVEXPTELFPPLFLEVFE 263 (267)
T ss_dssp CCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHHHHHHHHHHHHHHHHHHC-CCSSCGGGSCHHHHHHTC
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCccCCCcHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999997 999999998
Q ss_pred CC
Q psy7203 80 SG 81 (92)
Q Consensus 80 ~~ 81 (92)
+.
T Consensus 264 ~~ 265 (267)
T 3ilz_A 264 DQ 265 (267)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 13
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.82 E-value=2.1e-20 Score=128.35 Aligned_cols=81 Identities=33% Similarity=0.497 Sum_probs=74.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC----CchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYP----SQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRD 76 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p----~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~E 76 (92)
+|++||++..+|+++|+++..+|.+|+..+|| +++.||++||++||+||+++.++++++++++.+|.+++++|+.|
T Consensus 162 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~g~~~i~~Ll~E 241 (248)
T 3k6p_A 162 SDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLE 241 (248)
T ss_dssp CCCTTCSCHHHHHHHHHHHHHHHHHHHHTC----CCCCCH-HHHHHTTHHHHHHHHHHHHHHHHCC-CCCSSCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHH
Confidence 58999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q psy7203 77 MLLSG 81 (92)
Q Consensus 77 ml~~~ 81 (92)
||+++
T Consensus 242 ml~~k 246 (248)
T 3k6p_A 242 MLEAM 246 (248)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99864
No 14
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.82 E-value=5.7e-20 Score=125.85 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=78.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++++..|.+++++|+.|||++
T Consensus 162 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~ 241 (243)
T 2iz2_A 162 PSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHA 241 (243)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHT
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy7203 81 G 81 (92)
Q Consensus 81 ~ 81 (92)
+
T Consensus 242 ~ 242 (243)
T 2iz2_A 242 K 242 (243)
T ss_dssp T
T ss_pred C
Confidence 6
No 15
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.81 E-value=7.5e-20 Score=126.35 Aligned_cols=84 Identities=43% Similarity=0.641 Sum_probs=79.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++++.+|.+++++|+.|||+.
T Consensus 175 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~ 254 (264)
T 1g2n_A 175 PDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRN 254 (264)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy7203 81 GSSF 84 (92)
Q Consensus 81 ~~~~ 84 (92)
..++
T Consensus 255 ~~~~ 258 (264)
T 1g2n_A 255 HAPP 258 (264)
T ss_dssp CC--
T ss_pred CCCc
Confidence 7543
No 16
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.80 E-value=9.4e-20 Score=124.67 Aligned_cols=82 Identities=32% Similarity=0.454 Sum_probs=78.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++..+++++++.+..|.+++++|+.|||++
T Consensus 164 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~ 243 (246)
T 1ymt_A 164 LDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQA 243 (246)
T ss_dssp SCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCTTCHHHHHHHC
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 244 ~~ 245 (246)
T 1ymt_A 244 KQ 245 (246)
T ss_dssp --
T ss_pred cc
Confidence 63
No 17
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.80 E-value=9.2e-20 Score=131.10 Aligned_cols=82 Identities=37% Similarity=0.645 Sum_probs=72.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++.+++++++|++++|.+++++||.|||++
T Consensus 270 pd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~kLLllLp~LR~ls~~~~e~L~~~kl~g~~~i~~LL~EMl~a 349 (352)
T 3tx7_B 270 LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHA 349 (352)
T ss_dssp SCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSCHHHHHHHC
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 350 kr 351 (352)
T 3tx7_B 350 KR 351 (352)
T ss_dssp --
T ss_pred cC
Confidence 63
No 18
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.80 E-value=2e-19 Score=126.65 Aligned_cols=82 Identities=28% Similarity=0.450 Sum_probs=79.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.+++++++++++.|++++++|+.|||+.
T Consensus 185 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~ 264 (303)
T 1xdk_B 185 GDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLEN 264 (303)
T ss_dssp SCSSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHCC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 265 ~~ 266 (303)
T 1xdk_B 265 SE 266 (303)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 19
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.80 E-value=1.8e-19 Score=131.90 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=75.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhh-hcCCCChhHHHHHHHh
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVR-LVGKTPIETLIRDMLL 79 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~-~~g~~~i~~Ll~Eml~ 79 (92)
+|++||++..+|+++|++++.+|++|+..+||+++.||++||++||+||+++.++++++++++ ..+.+++++||.|||+
T Consensus 337 pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LR~i~~~~~~~l~~~k~~~~~~~l~~Ll~Em~~ 416 (419)
T 3dzy_D 337 GDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYK 416 (419)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999996664 5688999999999997
Q ss_pred C
Q psy7203 80 S 80 (92)
Q Consensus 80 ~ 80 (92)
.
T Consensus 417 d 417 (419)
T 3dzy_D 417 D 417 (419)
T ss_dssp T
T ss_pred h
Confidence 5
No 20
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.79 E-value=3e-19 Score=121.06 Aligned_cols=79 Identities=28% Similarity=0.368 Sum_probs=76.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++++. |.+++++|+.|||+.
T Consensus 153 pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~k~-~~~~~~~Ll~Em~~~ 231 (232)
T 1osh_A 153 PDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV-NDHKFTPLLCEIWDV 231 (232)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH-TTCCCCHHHHHHHTC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHhcC
Confidence 5899999999999999999999999999999999999999999999999999999999999997 789999999999975
No 21
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.79 E-value=1e-19 Score=124.88 Aligned_cols=83 Identities=28% Similarity=0.478 Sum_probs=76.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHh
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYP--SQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLL 79 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p--~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~ 79 (92)
|++||++...|+++|+++..+|.+|+..+|| +++.||++||++||+||+++.++++++++.+..|.+++++|+.|||.
T Consensus 160 d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~ 239 (244)
T 1pdu_A 160 ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMFV 239 (244)
T ss_dssp CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHTTT
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHh
Confidence 7899999999999999999999999998886 57899999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy7203 80 SGSSF 84 (92)
Q Consensus 80 ~~~~~ 84 (92)
+..||
T Consensus 240 ~~~p~ 244 (244)
T 1pdu_A 240 TTLPF 244 (244)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 87543
No 22
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.79 E-value=9.8e-20 Score=123.76 Aligned_cols=82 Identities=45% Similarity=0.783 Sum_probs=78.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++++.+|.+++++|+.|||++
T Consensus 152 pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~eml~~ 231 (235)
T 2nxx_A 152 PDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEG 231 (235)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHTCCSCTTTTSSSSCCCHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 232 ~~ 233 (235)
T 2nxx_A 232 TT 233 (235)
T ss_dssp --
T ss_pred CC
Confidence 64
No 23
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.79 E-value=3.4e-19 Score=123.86 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=75.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhh-hcCCCChhHHHHHHHh
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVR-LVGKTPIETLIRDMLL 79 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~-~~g~~~i~~Ll~Eml~ 79 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++..+++.+++++ ..|++++++|+.|||.
T Consensus 188 pd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~Lp~LR~i~~~~~~~l~~~k~~~~~~~~~~Ll~Em~~ 267 (269)
T 3u9q_A 188 GDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYK 267 (269)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHS
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCCCcCHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999999999999997665 5789999999999997
Q ss_pred C
Q psy7203 80 S 80 (92)
Q Consensus 80 ~ 80 (92)
+
T Consensus 268 ~ 268 (269)
T 3u9q_A 268 D 268 (269)
T ss_dssp C
T ss_pred h
Confidence 4
No 24
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.78 E-value=4.5e-19 Score=120.61 Aligned_cols=82 Identities=48% Similarity=0.881 Sum_probs=78.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++|+.+..+|+++|+++..+|.+|+..+||+.+.||++||++||.||+++.++++++++.+++|.+++++|+.|||++
T Consensus 156 pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~~~~~~~e~l~~~~~~~~~~~~~ll~eml~~ 235 (240)
T 2p1t_A 156 PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 235 (240)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCchHHHHHHHHcC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 236 ~~ 237 (240)
T 2p1t_A 236 PH 237 (240)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 25
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.78 E-value=1.8e-19 Score=123.60 Aligned_cols=79 Identities=20% Similarity=0.383 Sum_probs=75.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CchhhHHHHHhhchhhhhhcHHHHHHhhhhhh--cCCCChhHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYP--SQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRL--VGKTPIETLIRD 76 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p--~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~--~g~~~i~~Ll~E 76 (92)
+|++||++...|+++|+++..+|.+|+..+|| +++.||++||++||+||+++.++++++++.+. .|.+++++|+.|
T Consensus 172 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~E 251 (254)
T 3b0t_A 172 PDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLE 251 (254)
T ss_dssp SCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCHHHHH
T ss_pred CCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCCChHHHH
Confidence 58999999999999999999999999999999 78999999999999999999999999999998 667889999999
Q ss_pred HHh
Q psy7203 77 MLL 79 (92)
Q Consensus 77 ml~ 79 (92)
||+
T Consensus 252 m~~ 254 (254)
T 3b0t_A 252 VFG 254 (254)
T ss_dssp HHC
T ss_pred hcC
Confidence 985
No 26
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.78 E-value=5.9e-19 Score=123.13 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=76.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||.+...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++|++++.| .++++|+.|||+.
T Consensus 203 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~-~~~~~Ll~Em~~~ 281 (283)
T 3ipq_A 203 ADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQD-KKLPPLLSEIWDV 281 (283)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHCC
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCChHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999999999987 4999999999986
Q ss_pred C
Q psy7203 81 G 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 282 ~ 282 (283)
T 3ipq_A 282 H 282 (283)
T ss_dssp -
T ss_pred C
Confidence 4
No 27
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.78 E-value=2.1e-19 Score=133.09 Aligned_cols=81 Identities=48% Similarity=0.893 Sum_probs=76.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||++..+|+++|++++.+|.+|+..+||+.+.||++||++||+||+++.+++|++||+|++|.++|++||.|||++
T Consensus 383 pd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~LRsi~~~~~E~l~~~kl~g~v~i~~Ll~EMl~a 462 (467)
T 3dzy_A 383 PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462 (467)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHHHTTTTTSTTSCCCCCSHHHHCC--
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy7203 81 G 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 463 ~ 463 (467)
T 3dzy_A 463 P 463 (467)
T ss_dssp -
T ss_pred C
Confidence 6
No 28
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.77 E-value=7.1e-19 Score=120.37 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=74.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCC----ChhHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKT----PIETLIRD 76 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~----~i~~Ll~E 76 (92)
+|++||++...|+++|+++..+|.+|+..+||+++ ||++||++||+||+++.++++++++.+..|+. ++++|+.|
T Consensus 163 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~E 241 (244)
T 1nq7_A 163 PDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKE 241 (244)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHH
Confidence 58999999999999999999999999999999988 99999999999999999999999999999875 89999999
Q ss_pred HHh
Q psy7203 77 MLL 79 (92)
Q Consensus 77 ml~ 79 (92)
||+
T Consensus 242 m~~ 244 (244)
T 1nq7_A 242 LFN 244 (244)
T ss_dssp HHC
T ss_pred hhC
Confidence 984
No 29
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.77 E-value=7.3e-19 Score=123.92 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=77.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCC--CChhHHHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK--TPIETLIRDML 78 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~--~~i~~Ll~Eml 78 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++.++++++++.+..|. +++++|+.|||
T Consensus 218 pd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~ 297 (302)
T 2hc4_A 218 PDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVF 297 (302)
T ss_dssp SCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999998764 78999999999
Q ss_pred hCCC
Q psy7203 79 LSGS 82 (92)
Q Consensus 79 ~~~~ 82 (92)
+.+.
T Consensus 298 ~~~~ 301 (302)
T 2hc4_A 298 GSEV 301 (302)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8763
No 30
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.77 E-value=1.2e-18 Score=123.64 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=76.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYP--SQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 78 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p--~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml 78 (92)
+|++||++...|+++|+++..+|.+|+..+|| +++.||++||++||+||+++.++++++++++..|. ++++|+.|||
T Consensus 233 pd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~kLLl~Lp~LR~l~~~~~e~l~~~k~~~~-~i~~Ll~Eml 311 (316)
T 1nrl_A 233 PDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP-FATPLMQELF 311 (316)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHT
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 58999999999999999999999999999999 78999999999999999999999999999999887 9999999999
Q ss_pred hCC
Q psy7203 79 LSG 81 (92)
Q Consensus 79 ~~~ 81 (92)
+.+
T Consensus 312 ~~~ 314 (316)
T 1nrl_A 312 GIT 314 (316)
T ss_dssp TCC
T ss_pred cCC
Confidence 875
No 31
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.77 E-value=8.7e-19 Score=122.90 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=77.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CchhhHHHHHhhchhhhhhcHHHHHHhhhhhhc--CCCChhHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYP--SQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV--GKTPIETLIRD 76 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p--~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~--g~~~i~~Ll~E 76 (92)
+|++||++...|+++|+++..+|.+|+..+|| +++.||++||++||+||+++.++++++++++.+ |.+++++|+.|
T Consensus 175 pd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~E 254 (292)
T 2o4j_A 175 PDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLE 254 (292)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTTSCHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCChhHHHHH
Confidence 58999999999999999999999999999999 789999999999999999999999999999984 57899999999
Q ss_pred HHhCCC
Q psy7203 77 MLLSGS 82 (92)
Q Consensus 77 ml~~~~ 82 (92)
||+.+.
T Consensus 255 ml~~~~ 260 (292)
T 2o4j_A 255 VFGNEI 260 (292)
T ss_dssp HHCCC-
T ss_pred HHcCCc
Confidence 999875
No 32
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.77 E-value=1.3e-18 Score=120.47 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=75.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhC---CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHH
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY---PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 78 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~---p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml 78 (92)
|++||++..+|+++|+++..+|.+|+..+| |+++.||++||++||+||+++.++++++++++..| .++++|+.|||
T Consensus 182 d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~ 260 (266)
T 2r40_D 182 DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCISLKLKN-RKLPPFLEEIW 260 (266)
T ss_dssp CCTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHh
Confidence 789999999999999999999999999998 88899999999999999999999999999999998 59999999999
Q ss_pred hCC
Q psy7203 79 LSG 81 (92)
Q Consensus 79 ~~~ 81 (92)
+..
T Consensus 261 ~~~ 263 (266)
T 2r40_D 261 DVA 263 (266)
T ss_dssp TCC
T ss_pred CCC
Confidence 865
No 33
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.76 E-value=7.4e-19 Score=122.24 Aligned_cols=82 Identities=48% Similarity=0.881 Sum_probs=79.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++||.+..+|+++|++++.+|.+|+..+||+++.||++||++||.||+++.++++++++.+++|.+++++|+.|||++
T Consensus 198 pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~i~~ll~eml~~ 277 (282)
T 1lbd_A 198 PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 277 (282)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 278 ~~ 279 (282)
T 1lbd_A 278 PH 279 (282)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 34
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.76 E-value=2.2e-19 Score=123.70 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCCCCCC---ChhHHHHHHHHHHHHHHHHHHhhC-CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHH
Q psy7203 1 MDACGLS---DVSHIESLQEKSQCALEEYCRTQY-PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRD 76 (92)
Q Consensus 1 ~Dr~gL~---~~~~V~~lQe~~~~aL~~~v~~~~-p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~E 76 (92)
+|||||+ ++.+|+++|++++.+|++|+..+| |+++.||++||++||+||+++..+++ +|+ +..++.+++||+.|
T Consensus 161 pDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~~~~~-lf~-~~~~~~~~~pLl~E 238 (244)
T 3gyt_A 161 SKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVT-LFL-GAGNTTEAASLPKE 238 (244)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHTTTT-TTT-TSCCCTTSCTTGGG
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHH-hccCCccCCcHHHH
Confidence 5999999 799999999999999999999888 88999999999999999999999998 554 45557789999999
Q ss_pred HHhCC
Q psy7203 77 MLLSG 81 (92)
Q Consensus 77 ml~~~ 81 (92)
||+..
T Consensus 239 if~~~ 243 (244)
T 3gyt_A 239 FFATN 243 (244)
T ss_dssp TSCCC
T ss_pred HhCcC
Confidence 99864
No 35
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.76 E-value=6.5e-19 Score=122.39 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=73.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCC----CChhHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK----TPIETLIRD 76 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~----~~i~~Ll~E 76 (92)
+|++||++...|+++|+++..+|.+|+..+|| ++.||++||++||+||+++.++++++++++..|+ +++++|+.|
T Consensus 178 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~E 256 (270)
T 1n83_A 178 ADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKE 256 (270)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcCHHHHH
Confidence 58999999999999999999999999999988 5799999999999999999999999999999886 479999999
Q ss_pred HHhCCCCCCCC
Q psy7203 77 MLLSGSSFSWP 87 (92)
Q Consensus 77 ml~~~~~~~~~ 87 (92)
||+.+ ..||
T Consensus 257 m~~~~--~~~~ 265 (270)
T 1n83_A 257 LFTSE--FEPA 265 (270)
T ss_dssp HC---------
T ss_pred HhCCC--CCCC
Confidence 99887 5665
No 36
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.75 E-value=1.2e-18 Score=118.67 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=73.9
Q ss_pred CCCCCCCC-------hhHHHHHHHHHHHHHHHHHHhhC---CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCCh
Q psy7203 1 MDACGLSD-------VSHIESLQEKSQCALEEYCRTQY---PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPI 70 (92)
Q Consensus 1 ~Dr~gL~~-------~~~V~~lQe~~~~aL~~~v~~~~---p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i 70 (92)
+|++||.+ ..+|+++|+++..+|..|+..++ |+++.||++||++||+||+++.+++++++|++++|.+++
T Consensus 148 pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~ 227 (240)
T 3oll_A 148 SSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPV 227 (240)
T ss_dssp SCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 47788754 56899999999999999998763 678999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCC
Q psy7203 71 ETLIRDMLLSG 81 (92)
Q Consensus 71 ~~Ll~Eml~~~ 81 (92)
++|+.|||+++
T Consensus 228 ~~Ll~eml~~~ 238 (240)
T 3oll_A 228 YDLLLEMLNAH 238 (240)
T ss_dssp CHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 99999999876
No 37
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.75 E-value=1.5e-18 Score=118.52 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=71.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHh--hCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRT--QYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 78 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~--~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml 78 (92)
+|++||++..+|+++|+++..+|.+|+.. .+|+++.||++||++||+||+++.++++++++. .|.+++++|+.|||
T Consensus 168 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL~~L~~Lr~i~~~~~e~l~~~--~~~~~~~~Ll~Em~ 245 (246)
T 1xvp_B 168 PDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHI--QGLSAMMPLLQEIC 245 (246)
T ss_dssp SSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHS--TTHHHHCHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCccHHHHHhc
Confidence 58999999999999999999999999984 467889999999999999999999999999986 47889999999998
Q ss_pred h
Q psy7203 79 L 79 (92)
Q Consensus 79 ~ 79 (92)
+
T Consensus 246 ~ 246 (246)
T 1xvp_B 246 S 246 (246)
T ss_dssp C
T ss_pred C
Confidence 5
No 38
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.74 E-value=6.1e-18 Score=115.93 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=75.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY-PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~-p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
|++||++...|+++|+++..+|.+|+..+| |+++.||++||++||+||+++.++++++++.+..| .++++|+.|||+.
T Consensus 166 d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~ 244 (248)
T 2nxx_E 166 ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKN-KKLPPFLAEIWDV 244 (248)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCccHHHHHHhcC
Confidence 789999999999999999999999999998 45899999999999999999999999999999986 5999999999987
Q ss_pred CCC
Q psy7203 81 GSS 83 (92)
Q Consensus 81 ~~~ 83 (92)
+.+
T Consensus 245 ~~~ 247 (248)
T 2nxx_E 245 DLK 247 (248)
T ss_dssp TC-
T ss_pred cCC
Confidence 643
No 39
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.72 E-value=1.3e-17 Score=115.37 Aligned_cols=79 Identities=28% Similarity=0.481 Sum_probs=74.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhh--CCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHh
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQ--YPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLL 79 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~--~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~ 79 (92)
|++||++...|+++|+++..+|.+|+..+ +|+++.||++||++||+||+++.++++++++.++.|.+++++|+.|||.
T Consensus 187 ~~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~el~~ 266 (271)
T 1ovl_A 187 ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFL 266 (271)
T ss_dssp CCTTCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 58999999999999999999999999886 4688999999999999999999999999999999999999999999997
Q ss_pred C
Q psy7203 80 S 80 (92)
Q Consensus 80 ~ 80 (92)
+
T Consensus 267 ~ 267 (271)
T 1ovl_A 267 D 267 (271)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.72 E-value=2.2e-18 Score=118.30 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=71.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCC----CChhHHHHH
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGK----TPIETLIRD 76 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~----~~i~~Ll~E 76 (92)
+|++||++..+|+++|+++..+|.+|+..+|| +.||++||++ |+||+++++++++++++|.+|+ .++++|+.|
T Consensus 169 pd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~--~~rf~~LLl~-p~LR~i~~~~~e~l~~~k~~~p~~~~~~~p~Ll~E 245 (248)
T 3l0l_A 169 AHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR--QSILAKLPPK-GKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKE 245 (248)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTC--GGGGGGSCCT-THHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHhhcc-HHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHH
Confidence 58999999999999999999999999998885 5799999999 9999999999999999999985 579999999
Q ss_pred HHh
Q psy7203 77 MLL 79 (92)
Q Consensus 77 ml~ 79 (92)
||+
T Consensus 246 mf~ 248 (248)
T 3l0l_A 246 LFS 248 (248)
T ss_dssp HHC
T ss_pred hhC
Confidence 985
No 41
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.72 E-value=4.2e-18 Score=116.55 Aligned_cols=79 Identities=24% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhC---CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 4 CGLSDVSHIESLQEKSQCALEEYCRTQY---PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 4 ~gL~~~~~V~~lQe~~~~aL~~~v~~~~---p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+||++..+|+++|+++..+|.+|+..++ |+++.||++||++||+||+++.++++++++++.+|.+++++|+.|||++
T Consensus 161 ~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 240 (248)
T 1xpc_A 161 KSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDA 240 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSSCHHHHHHHHHSC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 6788899999999999999999998775 4678999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 241 ~~ 242 (248)
T 1xpc_A 241 HR 242 (248)
T ss_dssp CS
T ss_pred Cc
Confidence 74
No 42
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.72 E-value=3e-17 Score=110.91 Aligned_cols=81 Identities=42% Similarity=0.691 Sum_probs=78.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+|++|+++..+|+++|+.+..+|.+|+..++|+.+.||++||.++|.||+++..+.+++++.++.|.+++++++.|||.+
T Consensus 156 ~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~l~~em~~~ 235 (237)
T 1pzl_A 156 PDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLG 235 (237)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHTT
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCcHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy7203 81 G 81 (92)
Q Consensus 81 ~ 81 (92)
+
T Consensus 236 ~ 236 (237)
T 1pzl_A 236 G 236 (237)
T ss_dssp C
T ss_pred C
Confidence 5
No 43
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.71 E-value=8.7e-18 Score=118.33 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=69.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhC---CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 4 CGLSDVSHIESLQEKSQCALEEYCRTQY---PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 4 ~gL~~~~~V~~lQe~~~~aL~~~v~~~~---p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
+||++..+|+++|+++..+|.+|+..++ |+++.||++||++||+||+++.++++++++++++|.+++++|+.|||+.
T Consensus 170 ~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~Lp~Lr~i~~~~~e~l~~~kl~g~~~i~~Ll~Eml~~ 249 (298)
T 2ocf_A 170 KSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDA 249 (298)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHcC
Confidence 8899999999999999999999998764 5678999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy7203 81 GS 82 (92)
Q Consensus 81 ~~ 82 (92)
+.
T Consensus 250 ~~ 251 (298)
T 2ocf_A 250 HR 251 (298)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 44
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.71 E-value=3e-17 Score=116.16 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=74.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHHhC
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY-PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLS 80 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~-p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml~~ 80 (92)
|++||++...|+++|+++..+|.+|+..+| |+++.||++||++||+||+++.++++++++.+..| .++++|+.|||+.
T Consensus 230 d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl~Lp~LR~l~~~~~e~l~~~~~~~-~~~~~Ll~Eml~~ 308 (310)
T 1z5x_E 230 ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETCFSLKLKN-RKVPSFLEEIWDV 308 (310)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHTC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHcC
Confidence 789999999999999999999999999887 67899999999999999999999999999999886 4999999999986
Q ss_pred C
Q psy7203 81 G 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 309 ~ 309 (310)
T 1z5x_E 309 V 309 (310)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.71 E-value=3.6e-18 Score=117.23 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCCCCCh---hHHHHHHHHHHHHHHHHHHhhC-CCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCChhHHHHHHH
Q psy7203 3 ACGLSDV---SHIESLQEKSQCALEEYCRTQY-PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 78 (92)
Q Consensus 3 r~gL~~~---~~V~~lQe~~~~aL~~~v~~~~-p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i~~Ll~Eml 78 (92)
++||++. .+|+++|++++.+|++|+..+| |+++.||++||++||+||+++. +++++|+.++ ++.++++|+.|||
T Consensus 163 ~~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~-~~e~lf~~k~-~~~~~~pLl~E~f 240 (243)
T 3up3_A 163 RDSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLREISA-SSGMLFLGTV-NTSEAEPLPREFF 240 (243)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-TCTTTTTTSC-CGGGSCHHHHTTS
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhccc-CCCCCCcHHHHHh
Confidence 3899876 8999999999999999998666 8899999999999999999999 9999998875 4678999999999
Q ss_pred hC
Q psy7203 79 LS 80 (92)
Q Consensus 79 ~~ 80 (92)
+.
T Consensus 241 ~~ 242 (243)
T 3up3_A 241 KV 242 (243)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 46
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.70 E-value=1.9e-17 Score=114.82 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=70.6
Q ss_pred CCCCCCCC-------hhHHHHHHHHHHHHHHHHHHhh---CCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCCh
Q psy7203 1 MDACGLSD-------VSHIESLQEKSQCALEEYCRTQ---YPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPI 70 (92)
Q Consensus 1 ~Dr~gL~~-------~~~V~~lQe~~~~aL~~~v~~~---~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i 70 (92)
+|++||.+ ..+|+++|+++..+|.+|+..+ +|+++.||++||++||+||+++.++++++++++++|.+++
T Consensus 146 pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~ 225 (268)
T 1yye_A 146 SSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPV 225 (268)
T ss_dssp CCC----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 47778754 7899999999999999999876 4678899999999999999999999999999999999999
Q ss_pred hHHHHHHHhCC
Q psy7203 71 ETLIRDMLLSG 81 (92)
Q Consensus 71 ~~Ll~Eml~~~ 81 (92)
++|+.|||+.+
T Consensus 226 ~~Ll~Eml~~~ 236 (268)
T 1yye_A 226 YDLLLEMLNAH 236 (268)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHhCc
Confidence 99999999864
No 47
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.69 E-value=2.2e-17 Score=114.63 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=71.0
Q ss_pred CCCCCCCC-------hhHHHHHHHHHHHHHHHHHHhh---CCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhcCCCCh
Q psy7203 1 MDACGLSD-------VSHIESLQEKSQCALEEYCRTQ---YPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPI 70 (92)
Q Consensus 1 ~Dr~gL~~-------~~~V~~lQe~~~~aL~~~v~~~---~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~g~~~i 70 (92)
+|++||.+ +.+|+++|+++..+|..|+..+ +|+++.||++||++||+||+++.++++++++++..|.+++
T Consensus 174 pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~ 253 (271)
T 1l2j_A 174 SSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPV 253 (271)
T ss_dssp C----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSCCH
T ss_pred CCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCh
Confidence 46777765 4689999999999999999876 4678899999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCC
Q psy7203 71 ETLIRDMLLSGS 82 (92)
Q Consensus 71 ~~Ll~Eml~~~~ 82 (92)
++|+.|||+++.
T Consensus 254 ~~Ll~Eml~~~~ 265 (271)
T 1l2j_A 254 YDLLLEMLNAHV 265 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCc
Confidence 999999998764
No 48
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.68 E-value=5.5e-17 Score=112.06 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCc---hhhHHHHHhhchhhhhhcHHHHHHhhhhhh---cCCCChhHHHH
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQ---PIRFGKLLLRLPSLRTVSSQVIEQLFFVRL---VGKTPIETLIR 75 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~---~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~---~g~~~i~~Ll~ 75 (92)
|++||++..+|+++|+++..+|.+|+..+||+. +.||++||++||+||+++.++++++||... .+.+++++|+.
T Consensus 158 d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~~Lp~Lr~l~~~~~e~lff~~~~~~~~~~~~p~Ll~ 237 (260)
T 3vhv_A 158 PKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLV 237 (260)
T ss_dssp ETTCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHH
Confidence 799999999999999999999999999999876 699999999999999999999999987543 56788999999
Q ss_pred HHHhCC
Q psy7203 76 DMLLSG 81 (92)
Q Consensus 76 Eml~~~ 81 (92)
|||+..
T Consensus 238 Ei~~~~ 243 (260)
T 3vhv_A 238 EIISDQ 243 (260)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999864
No 49
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.63 E-value=5.9e-16 Score=107.01 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCC---chhhHHHHHhhchhhhhhcHHHHHHhhhhhhc--CCCChhHHHHH
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPS---QPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV--GKTPIETLIRD 76 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~---~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~--g~~~i~~Ll~E 76 (92)
|++||++..+|+++|+++..+|.+|+..+||+ ++.||++||++||+||+++..+.+++|+.+.. ....+++|+.|
T Consensus 160 d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~lL~~Lr~l~~~~~e~~f~~~~~~~~~~~~p~Ll~E 239 (261)
T 3mnp_A 160 PKEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAE 239 (261)
T ss_dssp ETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCCCCHHHHH
T ss_pred CcCCCccHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHH
Confidence 78999999999999999999999999999985 48999999999999999999999999877665 56789999999
Q ss_pred HHhCC
Q psy7203 77 MLLSG 81 (92)
Q Consensus 77 ml~~~ 81 (92)
||+..
T Consensus 240 i~~~~ 244 (261)
T 3mnp_A 240 IITNQ 244 (261)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99854
No 50
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=110.18 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCc---hhhHHHHHhhchhhhhhcHHHHHHhhhhhh---cCCCChhHHHH
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQ---PIRFGKLLLRLPSLRTVSSQVIEQLFFVRL---VGKTPIETLIR 75 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~---~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~---~g~~~i~~Ll~ 75 (92)
|++||++..+|+++|++++.+|.+|+..++++. +.||++||++||+||+++.++++++||... .+.+++++|+.
T Consensus 192 d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~lLp~Lr~l~~~~~e~lff~~~q~~~~~~~~p~Ll~ 271 (294)
T 3vhu_A 192 PKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLV 271 (294)
T ss_dssp ETTCCTTHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCHHHH
Confidence 789999999999999999999999998888765 789999999999999999999999986443 46788999999
Q ss_pred HHHhCC
Q psy7203 76 DMLLSG 81 (92)
Q Consensus 76 Eml~~~ 81 (92)
|||+..
T Consensus 272 Ei~~~~ 277 (294)
T 3vhu_A 272 EIISDQ 277 (294)
T ss_dssp HHHHHH
T ss_pred HHHcCC
Confidence 999864
No 51
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.63 E-value=5.8e-16 Score=102.90 Aligned_cols=65 Identities=32% Similarity=0.497 Sum_probs=61.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhc
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~ 65 (92)
+|++||++...|+++|+++..+|.+|+..+||+++.||++||++||+||+++++++|+++++|+.
T Consensus 134 pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~E~l~~~k~~ 198 (199)
T 3cqv_A 134 ADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVH 198 (199)
T ss_dssp SCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999865
No 52
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.60 E-value=7.5e-16 Score=106.74 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=71.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhC---CCchhhHHHHHhhchhhhhhcHHHHHHhhhh--hh-cCCCChhHHHH
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY---PSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV--RL-VGKTPIETLIR 75 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~---p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~--~~-~g~~~i~~Ll~ 75 (92)
|++||++...|+++|+++..+|.+|+..++ |+++.||++||++||+||+++..+++++|.. +. .|.+++++|+.
T Consensus 167 ~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~lf~~~~~~~~~~~~~~~Ll~ 246 (269)
T 1t7r_A 167 PVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMA 246 (269)
T ss_dssp ETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcChHHHHH
Confidence 689999999999999999999999998775 4568999999999999999999999999843 43 37899999999
Q ss_pred HHHhCC
Q psy7203 76 DMLLSG 81 (92)
Q Consensus 76 Eml~~~ 81 (92)
|||+..
T Consensus 247 E~~~~~ 252 (269)
T 1t7r_A 247 EIISVQ 252 (269)
T ss_dssp HHHHHT
T ss_pred HHHhCc
Confidence 999865
No 53
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.60 E-value=6.6e-16 Score=105.98 Aligned_cols=65 Identities=35% Similarity=0.505 Sum_probs=62.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhc
Q psy7203 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65 (92)
Q Consensus 1 ~Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~ 65 (92)
+|++||++..+|+++|+++..+|.+|+..+||+++.||++||++||+||+++++++|+++|+|..
T Consensus 179 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LLl~Lp~LR~l~~~~~E~L~~~k~~ 243 (245)
T 3n00_A 179 ADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVD 243 (245)
T ss_dssp SCCTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHTTCEEEEEC-
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999999999999999999999998864
No 54
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.57 E-value=2e-15 Score=104.18 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhh---CCCchhhHHHHHhhchhhhhhcHHHHHHhhhhhhc-----CCCChhHH
Q psy7203 2 DACGLSDVSHIESLQEKSQCALEEYCRTQ---YPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLV-----GKTPIETL 73 (92)
Q Consensus 2 Dr~gL~~~~~V~~lQe~~~~aL~~~v~~~---~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~~~~-----g~~~i~~L 73 (92)
|++||++..+|+++|+++..+|.+|+..+ +|+++.||++||++||+||+++..+ ++++++.. |.+++++|
T Consensus 159 ~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~--~~~~~~~~~q~~~~~~~~~~L 236 (261)
T 1sqn_A 159 PLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQL--HLYCLNTFIQSRALSVEFPEM 236 (261)
T ss_dssp CTTCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHTCCCCHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHhcCCCCChHHH
Confidence 78999999999999999999999999874 5678899999999999999998765 66667777 89999999
Q ss_pred HHHHHhCC
Q psy7203 74 IRDMLLSG 81 (92)
Q Consensus 74 l~Eml~~~ 81 (92)
+.|||...
T Consensus 237 l~Ei~~~~ 244 (261)
T 1sqn_A 237 MSEVIAAQ 244 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999854
No 55
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=39.97 E-value=14 Score=21.43 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=22.3
Q ss_pred CCCC-CCChhHHHHHHHHHHHHHHHHHHh
Q psy7203 2 DACG-LSDVSHIESLQEKSQCALEEYCRT 29 (92)
Q Consensus 2 Dr~g-L~~~~~V~~lQe~~~~aL~~~v~~ 29 (92)
||.| -..+..++++|+.++..+..|+..
T Consensus 29 dR~~~~~~pd~l~~lk~eIl~VIsKYv~I 57 (95)
T 2kxo_A 29 ERAQEGQTPDYLPTLRKALMEVLSKYVNV 57 (95)
T ss_dssp EECSSCCCCCSHHHHHHHHHHHHHHHSCC
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHheec
Confidence 4543 336789999999999999999864
No 56
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=37.67 E-value=46 Score=20.03 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhh-CCCchh
Q psy7203 5 GLSDVSHIESLQEKSQCALEEYCRTQ-YPSQPI 36 (92)
Q Consensus 5 gL~~~~~V~~lQe~~~~aL~~~v~~~-~p~~~~ 36 (92)
+.-.+.+|+.+.+.+..+|.+..+.. +|+.|.
T Consensus 21 ~~l~~~~v~~F~~~L~~~L~~~y~~HW~P~~P~ 53 (120)
T 3e9v_A 21 GCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS 53 (120)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTTSCCTTSTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 34567789999999999999987644 576663
No 57
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=35.53 E-value=28 Score=24.55 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhCCCchhhHHHHHhhchhhhh
Q psy7203 20 QCALEEYCRTQYPSQPIRFGKLLLRLPSLRT 50 (92)
Q Consensus 20 ~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~ 50 (92)
...|.+||...|.+++..|..-+..|..||.
T Consensus 25 ~~~L~~~I~~~y~e~~~~~~~~l~~l~~LR~ 55 (363)
T 3rau_A 25 QPAVKKFVLKNYGENPEAYNEELKKLELLRQ 55 (363)
T ss_dssp HHHHHHHHHHTTCSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999889999999999999996
No 58
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=33.31 E-value=93 Score=19.71 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhh
Q psy7203 13 ESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62 (92)
Q Consensus 13 ~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~ 62 (92)
.+.|-.++.+|+.+|...++.--..|+++|..|=+.=-++...+-.++..
T Consensus 83 ~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~ 132 (177)
T 2ful_A 83 PEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTK 132 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhc
Confidence 35688889999999865666666789999999988888888888777643
No 59
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=31.76 E-value=43 Score=18.73 Aligned_cols=21 Identities=10% Similarity=0.442 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHH
Q psy7203 8 DVSHIESLQEKSQCALEEYCR 28 (92)
Q Consensus 8 ~~~~V~~lQe~~~~aL~~~v~ 28 (92)
.+..++++++.+...+..|+.
T Consensus 34 ~p~~l~~lk~eil~VIskYv~ 54 (80)
T 3ku7_A 34 NLPYMEEMRKEIIAVIQKYTK 54 (80)
T ss_dssp CCTTHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999985
No 60
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=30.99 E-value=1e+02 Score=20.22 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=33.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHh
Q psy7203 4 CGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLL 43 (92)
Q Consensus 4 ~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~ 43 (92)
|+....++.+++++.+..-|-+.++.+-.++.++.+.=++
T Consensus 92 PWt~~tkK~~~~~~~le~kL~~i~~~~t~Gd~~~l~~~f~ 131 (215)
T 2fm9_A 92 PWLPETKKAEAKLENLEKQLLDIIKNNTGGELSKLSTNLV 131 (215)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 7788889999999999999999998777777777766443
No 61
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=30.80 E-value=1.2e+02 Score=20.18 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=32.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHhh
Q psy7203 4 CGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLR 44 (92)
Q Consensus 4 ~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~~~rf~~LL~~ 44 (92)
|+....++.+++++.+..-|-+.++.+-.++.++.+.=++.
T Consensus 118 PWt~~tkK~~~~~e~le~kL~~i~k~~t~Gd~~~L~~~fv~ 158 (240)
T 2fm8_C 118 PWLPETKKAEAKLENLEKQLLDIIKNNTGGELSKLSTNLVM 158 (240)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 77888899999999999999999988888888877764443
No 62
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=29.97 E-value=46 Score=23.55 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhCC---CchhhHHHHHhhchhhhhh
Q psy7203 20 QCALEEYCRTQYP---SQPIRFGKLLLRLPSLRTV 51 (92)
Q Consensus 20 ~~aL~~~v~~~~p---~~~~rf~~LL~~Lp~LR~l 51 (92)
...|.+||...+. +++..|.+.+..|..||.-
T Consensus 39 ~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~ 73 (380)
T 3c3r_A 39 AKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRA 73 (380)
T ss_dssp HHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHH
Confidence 5678899998887 6788999999999999984
No 63
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=28.14 E-value=66 Score=19.58 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhh-CCCchhh
Q psy7203 7 SDVSHIESLQEKSQCALEEYCRTQ-YPSQPIR 37 (92)
Q Consensus 7 ~~~~~V~~lQe~~~~aL~~~v~~~-~p~~~~r 37 (92)
-.+.+|+.+.+.+...|.++.+.. +|+.|.|
T Consensus 27 lp~~~v~~F~~~L~~~L~~~y~~HWyP~~P~k 58 (130)
T 2z15_A 27 LPRRRVNIFGEELERLLKKKYEGHWYPEKPYK 58 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCCTTCTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 356789999999999999877533 4666543
No 64
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=27.87 E-value=89 Score=19.41 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCCCchhhHHHHHhhchhhhhhcHHHH
Q psy7203 21 CALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVI 56 (92)
Q Consensus 21 ~aL~~~v~~~~p~~~~rf~~LL~~Lp~LR~l~~~~~ 56 (92)
..|..|.... .-+|.|+..+-.+|..|+.+..+|-
T Consensus 108 ~~L~~y~~~l-e~DP~rL~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 108 GELRDVAEGS-AADPEALDRVEARLSALSKLKNKYG 142 (175)
T ss_dssp HHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555433 4589999999999999999988763
No 65
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=24.05 E-value=76 Score=15.72 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q psy7203 10 SHIESLQEKSQCALEEYCRT 29 (92)
Q Consensus 10 ~~V~~lQe~~~~aL~~~v~~ 29 (92)
.-|++-|+-.++.|.+|.++
T Consensus 14 efvrrhqeitqetlheyaqk 33 (52)
T 1y66_A 14 EFVRRHQEITQETLHEYAQK 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888754
No 66
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=23.49 E-value=99 Score=16.82 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhCCCc
Q psy7203 4 CGLSDVSHIESLQEKSQCALEEYCRTQYPSQ 34 (92)
Q Consensus 4 ~gL~~~~~V~~lQe~~~~aL~~~v~~~~p~~ 34 (92)
+|+.. .++++.=+.++.++..|+..+.|.+
T Consensus 55 ~Gvg~-~k~~~yG~~~l~~i~~~~~e~~p~~ 84 (85)
T 2kv2_A 55 DGVTE-DKLEKYGAEVISVLQKYSEWTSPAE 84 (85)
T ss_dssp SSCCH-HHHHHTHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCH-HHHHHHHHHHHHHHHHhccccCCCC
Confidence 45543 4888888999999999988888754
No 67
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=20.85 E-value=76 Score=14.61 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy7203 10 SHIESLQEKSQCALEE 25 (92)
Q Consensus 10 ~~V~~lQe~~~~aL~~ 25 (92)
.+...+|++++.||-.
T Consensus 3 skLs~LQ~eLL~aLL~ 18 (32)
T 1g2y_A 3 SKLSQLQTEMLAALLE 18 (32)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3567788888888753
No 68
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=20.00 E-value=1.8e+02 Score=18.37 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCchhhHHHHHhhchhhhhhcHHHHHHhhhh
Q psy7203 13 ESLQEKSQCALEEYCR-TQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFV 62 (92)
Q Consensus 13 ~~lQe~~~~aL~~~v~-~~~p~~~~rf~~LL~~Lp~LR~l~~~~~~~l~~~ 62 (92)
.+.|-.++.+|+.+|. ..+|.--..|++++..|=+.==++...+-.++-.
T Consensus 106 ~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~ 156 (189)
T 1paq_A 106 EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDN 156 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhC
Confidence 4568888999999986 4556655688999999988888888888777643
Done!