RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7203
(92 letters)
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 128 bits (323), Expect = 8e-39
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DACGLSDV+H+ESLQEKSQCALEEY R+QYP+QP RFGKLLLRLPSLRTVSS VIEQLFF
Sbjct: 154 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 213
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYM 89
VRLVGKTPIETLIRDMLLSGSSF+WPYM
Sbjct: 214 VRLVGKTPIETLIRDMLLSGSSFNWPYM 241
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 123 bits (310), Expect = 5e-37
Identities = 35/81 (43%), Positives = 55/81 (67%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+ F
Sbjct: 157 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 216
Query: 62 VRLVGKTPIETLIRDMLLSGS 82
++L G I+ L+++MLL GS
Sbjct: 217 IKLFGMAKIDNLLQEMLLGGS 237
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 121 bits (306), Expect = 2e-36
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ V +E L+EK LEEY RT +P++P RF KLLLRLP+LR++ + +E LFF
Sbjct: 153 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
+L+G PI+T + +ML +
Sbjct: 213 FKLIGDVPIDTFLMEMLEGTTD 234
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 121 bits (304), Expect = 5e-36
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L++ S ++ QEK+ AL +Y + YP +F +LLL L +R +S Q E L+
Sbjct: 165 DVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYH 224
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
L + P L+ +ML + +
Sbjct: 225 KHLGNEMPRNNLLIEMLQAKQT 246
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 118 bits (297), Expect = 5e-35
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 157 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 216
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L+G TPI+T + +ML + +
Sbjct: 217 FKLIGDTPIDTFLMEMLEAPHQMT 240
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 118 bits (298), Expect = 9e-35
Identities = 39/79 (49%), Positives = 59/79 (74%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 199 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 258
Query: 62 VRLVGKTPIETLIRDMLLS 80
+L+G TPI+T + +ML +
Sbjct: 259 FKLIGDTPIDTFLMEMLEA 277
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 117 bits (295), Expect = 2e-34
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L++
Sbjct: 176 DVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYY 235
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
L G P L+ +ML + +
Sbjct: 236 KHLNGDVPYNNLLIEMLHAKRA 257
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 118 bits (296), Expect = 6e-34
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S Q E L++
Sbjct: 271 DVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYY 330
Query: 62 VRLVGKTPIETLIRDMLLSGSS 83
L G P L+ +ML + +
Sbjct: 331 KHLNGDVPYNNLLIEMLHAKRA 352
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 116 bits (291), Expect = 7e-34
Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL + +E L+EK L+EYCR S+ RF LLLRLP+LR++S + E LFF
Sbjct: 176 DVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFF 235
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
LV T I IRD L + + P +M
Sbjct: 236 FHLVADTSIAGYIRDALRNH---APPIDTNM 263
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 114 bits (286), Expect = 3e-33
Identities = 15/90 (16%), Positives = 34/90 (37%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
+ L+ + I ++Q+ A+ + + +P +LL L +R + I
Sbjct: 152 EVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQR 211
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWPYMNS 91
++ G L+++ML + N
Sbjct: 212 LKSEGVVTFCDLLKEMLDAQDFLEKKSSNE 241
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 114 bits (287), Expect = 3e-33
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYP--SQPIRFGKLLLRLPSLRTVSSQVIEQL 59
+ GL + +E LQ K L+++ ++P KLL +LP LRT+ +Q ++++
Sbjct: 187 ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRI 246
Query: 60 FFVRLVGKTPIETLIRDMLLSGSSF 84
F+++L P +I + L F
Sbjct: 247 FYLKLEDLVPPPAIIDKLFLDTLPF 271
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 112 bits (283), Expect = 6e-33
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
G+ + + + Q AL +Y T YPS +F L+ LP + ++ + + L+
Sbjct: 163 SVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYT 222
Query: 62 VRLVGKTPIETLIRDML 78
G P +TL+ +ML
Sbjct: 223 KHCAGSAPTQTLLMEML 239
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 113 bits (284), Expect = 8e-33
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + + LF
Sbjct: 190 DIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFL 249
Query: 62 VRLVGKTPIETLIRDML 78
R+ P+E L + L
Sbjct: 250 FRITSDRPLEELFLEQL 266
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 112 bits (282), Expect = 1e-32
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY--PSQPIRFGKLLLRLPSLRTVSSQVIEQL 59
D GL D +E LQ + L+E+ P +LL +LP LRT+ +Q ++++
Sbjct: 180 DRHGLQDPRRVEELQNRIASCLKEHMAAVAGDPQPASCLSRLLGKLPELRTLCTQGLQRI 239
Query: 60 FFVRLVGKTPIETLIRDMLLSGSSF 84
F ++L P ++ + + SF
Sbjct: 240 FCLKLEDLVPPPPIVDKIFMDTLSF 264
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 111 bits (279), Expect = 3e-32
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQP--IRFGKLLLRLPSLRTVSSQVIEQL 59
+ GL + +E LQ K +L ++ +Q F +LL +LP LR++S Q ++++
Sbjct: 160 ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRI 219
Query: 60 FFVRLVGKTPIETLIRDMLLSGSSF 84
F+++L P LI +M ++ F
Sbjct: 220 FYLKLEDLVPAPALIENMFVTTLPF 244
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 109 bits (274), Expect = 2e-31
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ + DV ++ LQ+ AL++Y Q+ P R GK+L+ LP LR S++ ++ +
Sbjct: 163 DSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYN 222
Query: 62 VRLVGKTPIETLIRDML 78
++L GK P+ L +ML
Sbjct: 223 IKLEGKVPMHKLFLEML 239
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 107 bits (270), Expect = 1e-30
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L ++ LQE AL+ Y R + PS+P F K+L+++ LR++S++ E++
Sbjct: 183 DRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVIT 242
Query: 62 VRLVGKTPIETLIRDMLLSGSSF 84
+++ + LI++ML +
Sbjct: 243 LKMEIPGSMPPLIQEMLENSEGL 265
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 107 bits (268), Expect = 1e-30
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL+ S IE QE +Q L++Y + Y R ++L+RLP+LR +SS + E+LFF
Sbjct: 157 DHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFF 216
Query: 62 VRLVGKTPIETLIRDMLLS 80
L+G I+++I +L
Sbjct: 217 TGLIGNVSIDSIIPYILKM 235
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 107 bits (270), Expect = 2e-30
Identities = 23/84 (27%), Positives = 47/84 (55%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + + ++ LQE AL+ Y R + PS+P F K+L+++ LR++S++ E++
Sbjct: 186 DRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVIT 245
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+++ + LI++ML +
Sbjct: 246 LKMEIPGSMPPLIQEMLENSEGHE 269
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 106 bits (266), Expect = 3e-30
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL V +IE LQ ++Q L E+ R IR +L L LR ++S V+ +LFF
Sbjct: 188 DLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFF 247
Query: 62 VRLVGKTPIETLIRDMLLSG 81
++G ++ ++ +ML +
Sbjct: 248 RPIIGAVSMDDMMLEMLCAK 267
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 104 bits (260), Expect = 2e-29
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY----PSQPIRFGKLLLRLPSLRTVSSQVIE 57
D+ + D +E L+E AL EY + ++ R G+LLL LP LR + +V+
Sbjct: 163 DSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLA 222
Query: 58 QLFFVRLVGKTPIETLIRDML 78
+ V+L GK P+ L +ML
Sbjct: 223 HFYGVKLEGKVPMHKLFLEML 243
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 103 bits (259), Expect = 2e-29
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + ++ LQE AL Y R + PSQP F ++L+++ LR +S++ E+
Sbjct: 159 DRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAIT 218
Query: 62 VRLVGKTPIETLIRDML 78
+++ P+ LIR+ML
Sbjct: 219 LKMEIPGPMPPLIREML 235
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 102 bits (257), Expect = 1e-28
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D + D +E LQ AL Y +P + F ++L++L SLRT+SS EQ+F
Sbjct: 204 DRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFA 263
Query: 62 VRLVGKTPIETLIRDML 78
+RL K + L+ ++
Sbjct: 264 LRLQDK-KLPPLLSEIW 279
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 102 bits (256), Expect = 2e-28
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ D IE+LQ++ L+ Y R Q+P + + K++ +L LR+++ + +Q
Sbjct: 219 DRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRS 278
Query: 62 VRLVGKTP--IETLIRDMLLSGSS 83
+ + + L+ ++ S S
Sbjct: 279 LSFQPEHSMQLTPLVLEVFGSEVS 302
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 101 bits (253), Expect = 4e-28
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +V IE +Q+ ALE + +P F KLL ++ LR + ++ ++ L
Sbjct: 189 DRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQV 248
Query: 62 VRLV-GKTPIETLIRDML 78
++ + L++++
Sbjct: 249 IKKTETDMSLHPLLQEIY 266
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 100 bits (250), Expect = 6e-28
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D + D +E LQE L++ C+ P P F LL RL LRT + E L
Sbjct: 154 DRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMS 213
Query: 62 VRLVGKTPIETLIRDML 78
R+ L+ ++
Sbjct: 214 WRV-NDHKFTPLLCEIW 229
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 102 bits (255), Expect = 2e-27
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D+ GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 62 VRLVGKTPIETLIRDMLLSGSSFS 85
+L+G TPI+T + +ML + +
Sbjct: 444 FKLIGDTPIDTFLMEMLEAPHQMT 467
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 98.2 bits (244), Expect = 4e-26
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +V IE +Q+ ALE + +P F KLL ++ LR + ++ ++ L
Sbjct: 338 DRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQV 397
Query: 62 VRLV-GKTPIETLIRDML 78
++ + L++++
Sbjct: 398 IKKTETDMSLHPLLQEIY 415
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 92.8 bits (231), Expect = 5e-25
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY--PSQPIRFGKLLLRLPSLRTVSSQVIEQL 59
D G++ I+ LQE+ L+ Y + Q P + KLL L LR+++ Q+
Sbjct: 169 DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQI 228
Query: 60 FFVRLVGKTPIETLIRDM 77
++ G + + L++++
Sbjct: 229 QHIQ--GLSAMMPLLQEI 244
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 91.8 bits (228), Expect = 1e-24
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 5 GLSDVSHIESLQEKSQCALEEY---CRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
L + HI + +K L Q R +LLL L +R +S++ +E L+
Sbjct: 162 SLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYS 221
Query: 62 VRLVGKTPIETLIRDMLLSGSSFSWP 87
++ P+ L+ +M L P
Sbjct: 222 MKCKNVVPLYDLLLEM-LDAHRLHAP 246
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 91.4 bits (227), Expect = 2e-24
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ + + +E LQE AL P + RF KLLL+LP LRT+++ E+L
Sbjct: 180 DRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLS 239
Query: 62 VRLVGK 67
R+ +
Sbjct: 240 FRVDAQ 245
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 92.2 bits (229), Expect = 2e-24
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 5 GLSDVSHIESLQEKSQCALEEY---CRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
L + HI + +K L Q R +LLL L +R +S++ +E L+
Sbjct: 171 SLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYS 230
Query: 62 VRLVGKTPIETLIRDML 78
++ P+ L+ +ML
Sbjct: 231 MKCKNVVPLSDLLLEML 247
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 88.7 bits (220), Expect = 4e-23
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY-PSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
+ LS+ +E +QE AL+ Y + P F KLL L LRT+ + E F
Sbjct: 230 ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETCF 289
Query: 61 FVRLVGKTPIETLIRDML 78
++L + + + ++
Sbjct: 290 SLKL-KNRKVPSFLEEIW 306
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 86.6 bits (215), Expect = 4e-23
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D G+ +V+ +E+LQE AL +P++ F KLLL+LP LR++++ E+L
Sbjct: 135 DRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLA 194
Query: 62 VRL 64
++
Sbjct: 195 FKV 197
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 85.6 bits (212), Expect = 3e-22
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEY----------CRTQYPSQPIRFGKLLLRLPSLRTV 51
L + K L Q +R LL+ L +R
Sbjct: 149 SMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHA 208
Query: 52 SSQVIEQLFFVRLVGKTPIETLIRDML 78
S++ +E L ++ P+ L+ +ML
Sbjct: 209 SNKGMEHLLNMKCKNVVPVYDLLLEML 235
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 86.5 bits (214), Expect = 4e-22
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIR--FGKLLLRLPSLRTVSSQVIEQL 59
D G+ ++ LQE+ L+ Y P R F K++ L LR++++Q ++L
Sbjct: 234 DRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRL 293
Query: 60 FFVRLVGKTPIETLIRDML-LSGS 82
++ + L++++ ++GS
Sbjct: 294 LRIQDIHP-FATPLMQELFGITGS 316
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 85.1 bits (211), Expect = 5e-22
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIR-FGKLLLRLPSLRTVSSQVIEQLF 60
+ L + +E +QE AL Y + +P F KLL L LRT+ +Q E F
Sbjct: 166 ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCF 225
Query: 61 FVRLVGKTPIETLIRDML 78
++L K + + ++
Sbjct: 226 SLKLKNK-KLPPFLAEIW 242
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 83.7 bits (207), Expect = 2e-21
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL V IE QE A E Y + + P + KLL+++ LR + + +
Sbjct: 185 DRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLH 244
Query: 62 VRLVGKTPIET-LIRDML 78
+++ T + L ++
Sbjct: 245 MKVEXPTELFPPLFLEVF 262
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 82.6 bits (204), Expect = 4e-21
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 4 CGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIR-FGKLLLRLPSLRTVSSQVIEQLFFV 62
D I E+ L Y + Y + +L L LR +S+ F+
Sbjct: 167 TDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLREISASSGML--FL 224
Query: 63 RLVGKTPIETLIRDM 77
V + E L R+
Sbjct: 225 GTVNTSEAEPLPREF 239
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 83.0 bits (205), Expect = 4e-21
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D GL +V HIE +QE L + ++ +P F KLL ++ LR + ++ + +
Sbjct: 186 DRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQI 245
Query: 62 VRLV-GKTPIETLIRDML 78
++ + L++++
Sbjct: 246 IKKTESDAALHPLLQEIY 263
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 82.5 bits (204), Expect = 6e-21
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQP---IRFGKLLLRLPSLRTVSSQVIEQ 58
D GL +E +Q L Y Q + P + FGK+L L +RT+ Q
Sbjct: 182 DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNM 241
Query: 59 LFFVRLVGKTPIETLIRDML 78
++L + + + ++
Sbjct: 242 CISLKLKNR-KLPPFLEEIW 260
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 81.9 bits (202), Expect = 1e-20
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEY----------CRTQYPSQPIRFGKLLLRLPSLRTV 51
L + K L Q +R LL+ L +R
Sbjct: 147 SMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHA 206
Query: 52 SSQVIEQLFFVRLVGKTPIETLIRDMLLSGSSFSWP 87
S++ +E L ++ P+ L+ +ML +
Sbjct: 207 SNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVLRGCK 242
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 81.4 bits (201), Expect = 2e-20
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY--PSQPIRFGKLLLRLPSLRTVSSQVIEQL 59
D G+ D +E++Q++ L+ Y R ++ P + K++ +L LR+++ + +Q
Sbjct: 176 DRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQY 235
Query: 60 FFVRLV--GKTPIETLIRDMLLSGSSFSWP 87
+ + L+ ++ + S
Sbjct: 236 RSLSFQPENSMKLTPLVLEVFGNEISLVPR 265
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 80.3 bits (198), Expect = 4e-20
Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY---PSQPIRFGKLLLRLPSLRTVSSQVIEQ 58
GL + + L+ L+ + S RF +L L S++ ++ ++ +
Sbjct: 167 PVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQF 226
Query: 59 LFFVRL---VGKTPIETLIRDML 78
F + + + ++ +++
Sbjct: 227 TFDLLIKSHMVSVDFPEMMAEII 249
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 79.9 bits (197), Expect = 4e-20
Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIR--FGKLLLRLPSLRTVSSQVIEQL 59
D G+ D + IE++Q++ L+ Y R ++P + K++ +L LR+++ + +Q
Sbjct: 173 DRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQY 232
Query: 60 FFVRLVGKTPIET--LIRDML 78
+ + ++ L+ ++
Sbjct: 233 RCLSFQPECSMKLTPLVLEVF 253
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 78.9 bits (194), Expect = 1e-19
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 2 DACGLSDVSHIESLQEKSQCALEE----------YCRTQYPSQPIRFGKLLLRLPSLRTV 51
L + K L Q +R LL+ L +R
Sbjct: 175 SMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHA 234
Query: 52 SSQVIEQLFFVRLVGKTPIETLIRDML 78
S++ +E L ++ P+ L+ +ML
Sbjct: 235 SNKGMEHLLNMKCKNVVPVYDLLLEML 261
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 78.0 bits (192), Expect = 2e-19
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQ---YPSQPIRFGKLLLRLPSLRTVSSQVIEQLF- 60
GL + ++ L + + RF +L L S+ V ++ F
Sbjct: 163 GLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQ 222
Query: 61 -FVRLVGKTPIETLIRDML 78
F+ ++ +++
Sbjct: 223 TFLDKSMSIEFPEMLAEII 241
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 77.2 bits (190), Expect = 4e-19
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + ++ LQEK AL+ + + KL+ ++P++ V + E+L
Sbjct: 164 DRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIPTITAVCNLHGEKLQV 222
Query: 62 VRLVGKTPIETLIRDMLL 79
+ + TL +
Sbjct: 223 FKQSHPDIVNTLFPPLYK 240
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 74.5 bits (183), Expect = 6e-18
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
D L + IE LQ+K Q AL+ + + + KL+ ++ +LR + + E+L
Sbjct: 179 DRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMA 237
Query: 62 VRLVGKTPIET----LIRDMLLSGSSFSWP 87
+ + + L +++ S +
Sbjct: 238 FKAIYPDIVRLHFPPLYKELFTSEFEPAMQ 267
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 72.3 bits (177), Expect = 3e-17
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 4 CGLSDVSHIESLQEKSQCALEEYCRTQYPSQ-PIRFGKLLLRLPSLRTVSSQVIEQLFFV 62
D +E L + L Y + + + RF + L +LR V+ + F+
Sbjct: 167 VSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVTL--FL 224
Query: 63 RLVGKTPIETLIRDM 77
T +L ++
Sbjct: 225 GAGNTTEAASLPKEF 239
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 71.9 bits (176), Expect = 5e-17
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 5 GLSDVSHIESLQEKSQCALEEY---CRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
GL + E ++ L + C RF +L L S+ + S ++E F+
Sbjct: 161 GLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFY 220
Query: 62 VRLVGKT---PIETLIRDMLLS 80
++ +++
Sbjct: 221 TFRESHALKVEFPAMLVEIISD 242
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 71.5 bits (175), Expect = 8e-17
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 5 GLSDVSHIESLQEKSQCALEEY---CRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
GL + E ++ L + C RF +L L S+ + S ++E F+
Sbjct: 195 GLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFY 254
Query: 62 VRLVGKT---PIETLIRDMLLS 80
++ +++
Sbjct: 255 TFRESHALKVEFPAMLVEIISD 276
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 70.3 bits (172), Expect = 2e-16
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPS---QPIRFGKLLLRLPSLRTVSSQVIEQ 58
GL + E ++ L + + RF +L L +L + Q+
Sbjct: 159 PLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLY 218
Query: 59 LFFVRLVGKT---PIETLIRDML 78
+ + ++ +++
Sbjct: 219 CLNTFIQSRALSVEFPEMMSEVI 241
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 68.1 bits (166), Expect = 1e-15
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFF 61
GL + +E LQ + A + + L LR++ SQ +E+L
Sbjct: 170 HRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSI---LAKLPPKGKLRSLCSQHVERLQI 226
Query: 62 VRLVGKTPIETLIRDMLL 79
+ + ++ +
Sbjct: 227 FQHLHPIVVQAAFPPLYK 244
>3sy9_A Histidine porin OPDC; beta-barrel, channel, bacterial outer
membrane, membrane Pro; HET: C8E BOG; 2.80A {Pseudomonas
aeruginosa}
Length = 430
Score = 26.4 bits (57), Expect = 1.3
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 36 IRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETL 73
++ G L P + S+++ Q F + E L
Sbjct: 117 LKLGDQFLSNPVVAGGESRMLPQTFRGVSLTNNSFEDL 154
>2kqv_A Non-structural protein 3; severe acute respiratory syndrome (SARS),
nonstructural PROT macrodomains, RNA-binding proteins,
structural genomics; NMR {Sars coronavirus} PDB: 2kqw_A
Length = 198
Score = 25.2 bits (54), Expect = 3.9
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 43 LRLPSLRTVSSQVIEQLF--FVRLVGKTPIETLIRDMLLSGSSFSWPYMNSM 92
L+ P++ +VSS + ++ KT E + + L+GS W Y
Sbjct: 105 LKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQR 156
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
MTBI, transferase; HET: ATM; 1.85A {Staphylococcus
aureus subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 24.2 bits (53), Expect = 8.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 66 GKTPIETLIRDMLLSGSSFS 85
G P IR ++L G+
Sbjct: 63 GGVPTGEEIRKIVLEGNDMD 82
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 23.7 bits (52), Expect = 9.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 66 GKTPIETLIRDMLLSGSSFS 85
G P IR ++L G+
Sbjct: 39 GGVPTGEEIRKIVLEGNDMD 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.398
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,290,559
Number of extensions: 60441
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 61
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)