RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7203
(92 letters)
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 94.0 bits (233), Expect = 5e-26
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
DA GLSD I+ L+ + Q +LE+Y + RFG+LLL LP+L++++ Q+IEQ+
Sbjct: 152 PDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQ 211
Query: 61 FVRLVGKTPIETLIRDMLLSGS 82
F++L G I+ L+++MLL GS
Sbjct: 212 FIKLFGMAKIDNLLQEMLLGGS 233
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 93.2 bits (231), Expect = 1e-25
Identities = 36/78 (46%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D GL + +E L+EK L+EYCR S+ RF LLLRLP+LR++S + E LF
Sbjct: 175 PDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLF 234
Query: 61 FVRLVGKTPIETLIRDML 78
F LV T I IRD L
Sbjct: 235 FFHLVADTSIAGYIRDAL 252
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 92.8 bits (230), Expect = 2e-25
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 4 CGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVR 63
L ++ +E +QE+ AL +Y YP Q +FG+LLLRLP LR +S Q + L++
Sbjct: 164 KNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKH 223
Query: 64 LVGKTPIETLIRDML 78
+ G P L+ +ML
Sbjct: 224 VNGDVPYNNLLIEML 238
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 92.9 bits (230), Expect = 2e-25
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D G+ + IE +EK L+E+CR ++P RF +LLLRLP+LR++S + + LF
Sbjct: 181 PDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLF 240
Query: 61 FVRLVGKTPIETLIRDML 78
R+ P+E L + L
Sbjct: 241 LFRITSDRPLEELFLEQL 258
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 89.0 bits (220), Expect = 3e-24
Identities = 38/75 (50%), Positives = 56/75 (74%)
Query: 4 CGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLFFVR 63
GLS+ + +E+L+EK +LE YC+ +YP QP RF KLLLRLP+LR++ + +E LFF +
Sbjct: 153 KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFK 212
Query: 64 LVGKTPIETLIRDML 78
L+G TPI+T + +ML
Sbjct: 213 LIGDTPIDTFLMEML 227
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 87.4 bits (216), Expect = 2e-23
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D L + ++ LQE AL Y R + PSQP F ++L+++ LR +S++ E+
Sbjct: 158 GDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAI 217
Query: 61 FVRLVGKTPIETLIRDML 78
+++ P+ LIR+ML
Sbjct: 218 TLKMEIPGPMPPLIREML 235
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 86.6 bits (214), Expect = 2e-23
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D+ + DV ++ LQ+ AL++Y Q+ P R GK+L+ LP LR S++ ++ +
Sbjct: 144 SDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFY 203
Query: 61 FVRLVGKTPIETLIRDML 78
++L GK P+ L +ML
Sbjct: 204 NIKLEGKVPMHKLFLEML 221
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 84.7 bits (209), Expect = 2e-22
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYP--SQPIRFGKLLLRLPSLRTVSSQVIEQL 59
+ GL + +E LQ K L+++ ++P KLL +LP LRT+ +Q ++++
Sbjct: 152 ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRI 211
Query: 60 FFVRLVGKTPIETLIRDMLLS 80
F+++L P +I + L
Sbjct: 212 FYLKLEDLVPPPAIIDKLFLD 232
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 82.7 bits (204), Expect = 8e-22
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQ--PIRFGKLLLRLPSLRTVSSQVIEQL 59
+ GL + +E LQ K +L ++ +Q F +LL +LP LR++S Q ++++
Sbjct: 149 ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRI 208
Query: 60 FFVRLVGKTPIETLIRDMLLS 80
F+++L P LI +M ++
Sbjct: 209 FYLKLEDLVPAPALIENMFVT 229
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 82.8 bits (204), Expect = 8e-22
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQ--YPSQPIRFGKLLLRLPSLRTVSSQVIEQL 59
D GL + +E LQ + L+E+ P +LL +LP LRT+ +Q ++++
Sbjct: 152 DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRI 211
Query: 60 FFVRLVGKTPIETLIRDMLL 79
F+++L P +I + +
Sbjct: 212 FYLKLEDLVPPPPIIDKIFM 231
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 82.4 bits (203), Expect = 1e-21
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEY---CRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQ 58
L + HI + +K L Q R +LLL L +R +S++ +E
Sbjct: 159 TLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEH 218
Query: 59 LFFVRLVGKTPIETLIRDML 78
L+ ++ P+ L+ +ML
Sbjct: 219 LYSMKCKNVVPLYDLLLEML 238
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 82.3 bits (203), Expect = 2e-21
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D GL +V IE +Q+ ALE + +P F KLL ++ LR + ++ ++ L
Sbjct: 189 GDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQ 248
Query: 61 FVRLV-GKTPIETLIRDML 78
++ + L++++
Sbjct: 249 VIKKTETDMSLHPLLQEIY 267
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 81.3 bits (200), Expect = 3e-21
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQY----PSQPIRFGKLLLRLPSLRTVSSQVIE 57
D+ + D +E L+E AL EY + ++ R G+LLL LP LR + +V+
Sbjct: 145 DSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLA 204
Query: 58 QLFFVRLVGKTPIETLIRDML 78
+ V+L GK P+ L +ML
Sbjct: 205 HFYGVKLEGKVPMHKLFLEML 225
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 81.2 bits (200), Expect = 3e-21
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D + D +E LQE L++ C+ P P F LL RL LRT + E L
Sbjct: 153 PDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLM 212
Query: 61 FVRLVGKTPIETLIRDML 78
R+ L+ ++
Sbjct: 213 SWRV-NDHKFTPLLCEIW 229
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 80.5 bits (198), Expect = 9e-21
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D GL+ V IE Q+ A E Y + + KLL+++ LR + + +
Sbjct: 171 SDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 230
Query: 61 FVRLV-GKTPIETLIRDML 78
+++ L ++
Sbjct: 231 HMKVECPTELFPPLFLEVF 249
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 79.3 bits (195), Expect = 2e-20
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D + + +E+LQ+ AL Y R + P +RF ++L++L SLRT+SS EQ+F
Sbjct: 162 ADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 221
Query: 61 FVRLVGKTPIETLIRDML 78
+RL K + L+ ++
Sbjct: 222 ALRLQDK-KLPPLLSEIW 238
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 79.6 bits (196), Expect = 3e-20
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D GL +V +E++Q+ ALE + + +P F KLL ++ LR + ++ + +
Sbjct: 185 GDRPGLMNVPRVEAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQ 244
Query: 61 FVRLV-GKTPIETLIRDML 78
++ +T + L++++
Sbjct: 245 RIKKTETETSLHPLLQEIY 263
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 79.7 bits (196), Expect = 3e-20
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D GL +V HIE +QE L + ++ +P F KLL ++ LR + ++ + +
Sbjct: 185 GDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQ 244
Query: 61 FVRLV-GKTPIETLIRDM 77
++ + L++++
Sbjct: 245 IIKKTESDAALHPLLQEI 262
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 77.4 bits (190), Expect = 1e-19
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQY--PSQPIRFGKLLLRLPSLRTVSSQVIEQ 58
D G++ I+ LQE+ L+ Y + Q P + KLL L LR+++ Q
Sbjct: 168 PDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQ 227
Query: 59 LFFVRLVGKTPIETLIRDM 77
+ ++ G + + L++++
Sbjct: 228 IQHIQ--GLSAMMPLLQEI 244
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 74.4 bits (182), Expect = 2e-18
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEY----------CRTQYPSQPIRFGKLLLRLPSLRTV 51
L+ + K L Q +R LL+ L +R +
Sbjct: 148 SMYPLASANQEAESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHI 207
Query: 52 SSQVIEQLFFVRLVGKTPIETLIRDML 78
S++ +E L ++ P+ L+ +ML
Sbjct: 208 SNKGMEHLLSMKCKNVVPVYDLLLEML 234
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 71.7 bits (175), Expect = 2e-17
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D L + ++ LQEK AL+ + + KL+ ++P++ V + E+L
Sbjct: 163 PDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIPTITAVCNLHGEKLQ 221
Query: 61 FVRLVGKTPIETLIRDMLL 79
+ + TL +
Sbjct: 222 VFKQSHPDIVNTLFPPLYK 240
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 70.5 bits (172), Expect = 6e-17
Identities = 16/80 (20%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYP--SQPIRFGKLLLRLPSLRTVSSQVIEQL 59
D G+ D + IE++Q++ L+ Y R ++P + + K++ +L LR+++ + +Q
Sbjct: 174 DRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQY 233
Query: 60 FFVRLVGKTPIET--LIRDM 77
+ + ++ L+ ++
Sbjct: 234 RCLSFQPECSMKLTPLVLEV 253
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 70.0 bits (171), Expect = 7e-17
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQP---IRFGKLLLRLPSLRTVSSQVIE 57
D GL +E +Q L Y Q + P + FGK+L L +RT+ Q
Sbjct: 161 SDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSN 220
Query: 58 QLFFVRLVGKTPIETLIRDML 78
++L + + + ++
Sbjct: 221 MCISLKLKNR-KLPPFLEEIW 240
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 69.0 bits (168), Expect = 2e-16
Identities = 10/83 (12%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPS---QPIRFGKLLLRLPSLRTVSSQVIE- 57
GL + + L+ L+ + + RF +L L S++ ++ ++ +
Sbjct: 149 PVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQF 208
Query: 58 --QLFFVRLVGKTPIETLIRDML 78
L + ++ +++
Sbjct: 209 TFDLLIKSHMVSVDFPEMMAEII 231
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 68.5 bits (167), Expect = 3e-16
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQ---YPSQPIRFGKLLLRLPSLRTVSSQVIE- 57
GL + E ++ L + + S RF +L L +L + Q+
Sbjct: 150 PLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLY 209
Query: 58 --QLFFVRLVGKTPIETLIRDML 78
F ++ +++
Sbjct: 210 CLNTFIQSRALSVEFPEMMSEVI 232
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 67.8 bits (165), Expect = 9e-16
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQP--IRFGKLLLRLPSLRTVSSQVIEQL 59
D G+ ++ LQE+ L+ Y P F K++ L LR++++Q ++L
Sbjct: 211 DRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRL 270
Query: 60 FFVRLVGKTPIETLIRDML 78
++ + L++++
Sbjct: 271 LRIQDIH-PFATPLMQELF 288
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 65.5 bits (159), Expect = 4e-15
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 1 MDACGLSDVSHIESLQEKSQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF 60
D L + IE LQ+K Q AL+ + + + KL+ ++ +LR + + E+L
Sbjct: 171 ADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLM 229
Query: 61 FVRLVGKTPIETLIRDMLL 79
+ + + +
Sbjct: 230 AFKAIYPDIVRLHFPPLYK 248
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 64.0 bits (155), Expect = 2e-14
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 5 GLSDVSHIESLQEKSQCALEEYCRTQY---PSQPIRFGKLLLRLPSLRTVSSQVIEQLF- 60
GL + ++ L + + RF +L L S+ V ++ F
Sbjct: 150 GLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQ 209
Query: 61 -FVRLVGKTPIETLIRDML 78
F+ ++ +++
Sbjct: 210 TFLDKTMSIEFPEMLAEII 228
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 62.0 bits (150), Expect = 7e-14
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 2 DACGLSDVSHIESLQEKSQCALEEYCRTQYPSQP--IRFGKLLLRLPSLRTVSSQVIEQL 59
D G++ I+ LQE+ L + Q + KL+ L LR++++ +L
Sbjct: 168 DRPGVTQREEIDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSYEL 227
Query: 60 FFVR 63
+
Sbjct: 228 QRLE 231
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 27.2 bits (59), Expect = 0.27
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 19 SQCALEEYCRTQYPSQPIRFGKLLLRLPSLRTVSSQVIEQLF-FVRLVGKTPI 70
E + P+ L+ + ++ S + + + +GK PI
Sbjct: 129 KALKRPENFVGMHFFNPVHMMPLVEVIRGEKS-SDLAVATTVAYAKKMGKNPI 180
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 24.6 bits (53), Expect = 2.1
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 34 QPI-RFGKLLLRLPSLRTVSSQVIEQL 59
+PI G++++ P R + V+EQ
Sbjct: 246 KPIIENGEIVVEFPKAREIREYVLEQA 272
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 512
Score = 24.0 bits (52), Expect = 3.8
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 25 EYCRTQYPSQPIRF-GKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPI 70
++ + ++P R+ + + R +S +VI +L +R GKT I
Sbjct: 437 QWGERMWLAEPERYECQNIFEQYEGRELS-EVIAELHGLRSDGKTLI 482
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 270
Score = 23.8 bits (51), Expect = 4.3
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 34 QPI-RFGKLLLRLPSLRTVSSQVIEQL 59
GK P + + S+ +++L
Sbjct: 240 VKYLSHGKRTSEYPRPKEIRSRSMKEL 266
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 275
Score = 23.2 bits (50), Expect = 5.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 10 SHIESLQEKSQCALEEYCRTQYPS 33
S ++ ++ AL Y + YP+
Sbjct: 109 SALKQWRDACDSALRAYVKDHYPN 132
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1
protease {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 99
Score = 22.5 bits (49), Expect = 7.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 64 LVGKTPIETLIRDML 78
LVG TP + R++L
Sbjct: 76 LVGPTPANIIGRNLL 90
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 22.4 bits (47), Expect = 9.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 64 LVGKTPIETLIRDMLLSG 81
L G T +E D ++
Sbjct: 2 LAGNTEMEQCHVDAIVDT 19
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2
(HIV-2) protease {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 99
Score = 22.1 bits (48), Expect = 9.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 64 LVGKTPIETLIRDML 78
+ G TPI R++L
Sbjct: 76 MTGDTPINIFGRNIL 90
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain
{Bacteriophage mu [TaxId: 10677]}
Length = 76
Score = 22.0 bits (47), Expect = 9.4
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 11 HIESLQEKSQCALEEYCRTQYPSQP 35
+ SL +++ AL S
Sbjct: 49 NANSLPVEAKAALLLRQGEIETSLG 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.398
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 320,892
Number of extensions: 12301
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 40
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.7 bits)