BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7210
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EEF|A Chain A, Solution Structure Of The Cbm_21 Domain From Human Protein
Phosphatase 1, Regulatory (Inhibitor) Subunit 3b
Length = 156
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 25 GTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIP---K 81
GTVKV+NL+F+K V IR + + W ++TD C YV S DTF+F IS+P +
Sbjct: 50 GTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYAGSDR---DTFSFDISLPEKIQ 106
Query: 82 SAHQIEFCIAYKTENEEFWDNNNSKNYII-------KKGIAPPRNSPIL 123
S ++EF + Y+ + +WD+N KNY I +G+ P + P L
Sbjct: 107 SYERMEFAVYYECNGQTYWDSNRGKNYRIIRAELKSTQGMTKPHSGPDL 155
>pdb|2DJM|A Chain A, Solution Structure Of N-Terminal Starch-Binding Domain Of
Glucoamylase From Rhizopus Oryzae
pdb|2V8L|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|B Chain B, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|C Chain C, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|D Chain D, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2VQ4|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
Length = 106
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 23 FPGTVKVRNLSFKKEVIIRYS--TNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIP 80
F G + V+N+++ K+V + Y+ ++NW ++ A S S Y TF+ +
Sbjct: 21 FSGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASF-SGPISGSNYEYWTFSASVKGI 79
Query: 81 KSAHQIEFCIAYKTENEEFWDNNNSKNYII 110
K EF I Y+ + ++DNNNS NY +
Sbjct: 80 K-----EFYIKYEVSGKTYYDNNNSANYQV 104
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 68 IVYDTFAFQISIPKSAHQIEFCIAYKTEN-EEFWDNNNSKNYIIKKGIAPPRNSPILD 124
I Y++ +I IPKS I+ I YK EN E+ ++N+KNY+ + + +N IL+
Sbjct: 131 IFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188
>pdb|1Z6I|A Chain A, Crystal Structure Of The Ectodomain Of Drosophila
Transmembrane Receptor Pgrp-Lca
Length = 167
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 109 IIKKGIAPPRNSPILDDTISSKRYPDINHAKIDS-WTEFASWTH 151
++++G+ + +P T SSK P + K D+ + FA+WTH
Sbjct: 122 LLERGVKLGKIAPSYRFTASSKLMPSVTDFKADALYASFANWTH 165
>pdb|2F2L|A Chain A, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 109 IIKKGIAPPRNSPILDDTISSKRYPDINHAKIDS-WTEFASWTH 151
++++G+ + +P T SSK P + K D+ + FA+WTH
Sbjct: 122 LLERGVKLGKIAPSYRFTASSKLMPSVTDFKADALYASFANWTH 165
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 23 FPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITI--VYDTFAFQISIP 80
FP + +N+ F +EV R T C + T SS+ + + D F + +
Sbjct: 130 FPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVG 189
Query: 81 KSAHQIEFCI-AYKT-------ENEEFWDNNNSKNYIIKKGIAPPRNSPILDDTISSK 130
K + YK E E F KNY K I PR S +T+ +
Sbjct: 190 KVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGE 247
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 19 SVLMFPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITI 68
+ + + G V +FKKE+++ S T F+ +K YV P + +
Sbjct: 323 TTIFYSGVVNFNTANFKKEILLDRSAGKKTAFS-IKLDYVKKPIPETAMV 371
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 128 SSKRYPDINHAKI 140
SS +YPD+NHAK+
Sbjct: 188 SSTQYPDVNHAKV 200
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 128 SSKRYPDINHAKI 140
SS +YPD+NHAK+
Sbjct: 187 SSTQYPDVNHAKV 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,383,505
Number of Sequences: 62578
Number of extensions: 208809
Number of successful extensions: 388
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 20
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)