Query psy7210
Match_columns 159
No_of_seqs 105 out of 415
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 20:58:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03370 CBM_21: Putative phos 100.0 6E-39 1.3E-43 239.5 11.0 106 2-111 4-113 (113)
2 KOG3986|consensus 99.9 1.3E-26 2.9E-31 210.8 12.9 147 12-159 365-526 (526)
3 PF03423 CBM_25: Carbohydrate 98.6 2.2E-07 4.8E-12 66.6 7.8 74 30-112 13-86 (87)
4 PLN02316 synthase/transferase 96.3 0.011 2.3E-07 58.9 7.3 79 30-113 340-419 (1036)
5 PLN02316 synthase/transferase 95.6 0.037 8.1E-07 55.2 7.4 74 30-113 165-238 (1036)
6 PRK10785 maltodextrin glucosid 84.4 32 0.00069 32.4 13.4 80 18-105 16-95 (598)
7 cd02859 AMPKbeta_GBD_like AMP- 72.6 25 0.00053 24.1 6.7 52 27-97 6-57 (79)
8 cd02857 CD_pullulan_degrading_ 68.2 39 0.00084 23.8 11.9 74 21-104 16-91 (116)
9 PF02903 Alpha-amylase_N: Alph 65.1 51 0.0011 24.0 11.4 79 18-105 18-100 (120)
10 PF02248 Como_SCP: Small coat 63.7 82 0.0018 25.9 9.6 74 37-117 72-152 (182)
11 KOG3986|consensus 59.6 5.4 0.00012 37.5 1.6 56 19-79 205-260 (526)
12 PF07705 CARDB: CARDB; InterP 47.0 86 0.0019 21.0 9.6 70 18-96 16-87 (101)
13 cd05807 CBM20_CGTase CGTase, C 45.7 1.1E+02 0.0023 21.7 8.0 39 70-111 49-88 (101)
14 PF10633 NPCBM_assoc: NPCBM-as 45.0 93 0.002 20.8 7.8 67 20-93 4-78 (78)
15 cd02861 E_set_proteins_like E 41.3 91 0.002 21.1 5.2 44 36-96 14-57 (82)
16 cd05808 CBM20_alpha_amylase Al 36.5 1.4E+02 0.003 20.4 6.9 75 23-111 3-81 (95)
17 PF10648 Gmad2: Immunoglobulin 35.0 1.6E+02 0.0036 20.8 8.4 53 19-81 16-68 (88)
18 PF03404 Mo-co_dimer: Mo-co ox 34.7 2E+02 0.0044 21.7 7.8 70 25-94 27-101 (131)
19 PF07987 DUF1775: Domain of un 34.5 98 0.0021 24.3 4.9 34 68-101 90-125 (145)
20 cd02112 eukary_NR_Moco molybdo 30.4 2.5E+02 0.0054 25.3 7.4 69 24-94 285-359 (386)
21 PF00686 CBM_20: Starch bindin 27.1 2.2E+02 0.0047 19.7 7.3 81 23-113 4-88 (96)
22 cd05820 CBM20_novamyl Novamyl 27.1 1.8E+02 0.0038 20.8 4.9 38 70-108 49-87 (103)
23 cd05816 CBM20_DPE2_repeat2 Dis 26.6 2.3E+02 0.005 19.9 7.6 78 23-112 2-84 (99)
24 PF09972 DUF2207: Predicted me 24.1 4.3E+02 0.0094 23.1 7.7 78 34-112 95-175 (511)
25 PF14741 GH114_assoc: N-termin 22.5 1.3E+02 0.0028 23.4 3.6 44 42-94 9-55 (129)
26 cd08545 YcnI_like Reeler-like 22.1 2.7E+02 0.0058 22.0 5.4 37 67-103 92-131 (152)
27 cd05467 CBM20 The family 20 ca 20.9 2.8E+02 0.006 18.7 5.0 40 70-111 42-83 (96)
No 1
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=100.00 E-value=6e-39 Score=239.48 Aligned_cols=106 Identities=42% Similarity=0.832 Sum_probs=84.3
Q ss_pred ceeeeecCccccCCCCCCCCeEeEEEEEeCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCC
Q psy7210 2 TKCICHDDTNEDTNPSRSVLMFPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPK 81 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~s~s~~~L~G~v~V~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~ 81 (159)
.+.||+.+ ...+.++..|.|+|+|+||||||+|+||||+|+|+|++|++|.|+++..+.+...++|+|+|+|+||+
T Consensus 4 ~~~V~Le~----~~~~~~~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~ 79 (113)
T PF03370_consen 4 EQNVCLES----VSLSPDQQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPD 79 (113)
T ss_dssp SSSEEEEE----EEEC--SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SS
T ss_pred CCEEEEEE----EEEcCCCCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCc
Confidence 35667666 22234599999999999999999999999999999999999999994333333457999999999998
Q ss_pred C----CCeEEEEEEEEcCCeeeeecCCCccEEEE
Q psy7210 82 S----AHQIEFCIAYKTENEEFWDNNNSKNYIIK 111 (159)
Q Consensus 82 ~----~~~leFcIrY~v~g~eyWDNN~G~NY~v~ 111 (159)
. +.+|||||||+++|+||||||+|+||+|+
T Consensus 80 ~~~~~~~~lef~I~Y~~~g~eyWDNN~g~NY~v~ 113 (113)
T PF03370_consen 80 LLPPEGGRLEFCIRYEVNGQEYWDNNNGKNYQVK 113 (113)
T ss_dssp E--T-TS-SEEEEEEEETTEEEEESTTTT-EEE-
T ss_pred ccccCCceEEEEEEEEeCCCEEecCCCccceEEC
Confidence 5 78999999999999999999999999984
No 2
>KOG3986|consensus
Probab=99.94 E-value=1.3e-26 Score=210.84 Aligned_cols=147 Identities=31% Similarity=0.509 Sum_probs=110.0
Q ss_pred ccCCCCCCCCe---EeEEEEEeCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCC---CCe
Q psy7210 12 EDTNPSRSVLM---FPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKS---AHQ 85 (159)
Q Consensus 12 ~~~~~s~s~~~---L~G~v~V~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~---~~~ 85 (159)
..+|++.+... |.|+|+|+||+|+|.|.||||+|+|++++|+.|.|+.+ +....+...|+|.|.|.+|+. ..+
T Consensus 365 ~leN~~~~~~~~~viag~v~v~Nidf~k~v~vryt~Dswrs~~d~~~sY~s~-~~~~p~~~~DiF~F~i~~~p~~~~~~~ 443 (526)
T KOG3986|consen 365 CLENASPSDPGFKVIAGTVRVKNIDFEKLVSVRYTWDSWRSTHDSSCSYISS-GGIFPGTDSDIFSFKIDLPPKPISLGK 443 (526)
T ss_pred eeeecccCCCccceEeeeeeEEeecccceeEEEecccccccccccceeeecc-CCCCCCccccceeeeccCCCCCCcccc
Confidence 44566666555 99999999999999999999999999999999999954 222334568999999999874 348
Q ss_pred EEEEEEEEcCCeeeeecCCCccEEEEeeecCCC--CCCCc-CCCCC---CCCCCC---ccccCCCCCccccccccCCCCC
Q psy7210 86 IEFCIAYKTENEEFWDNNNSKNYIIKKGIAPPR--NSPIL-DDTIS---SKRYPD---INHAKIDSWTEFASWTHLANDG 156 (159)
Q Consensus 86 leFcIrY~v~g~eyWDNN~G~NY~v~~~~~~p~--~~~~~-~~~~~---~~~~~~---~~~~~~~~~~~~~~w~~~~~~~ 156 (159)
|||||+|.+.|+||||||+|+||++.+....|. +.+|+ ..+.+ .|+-+. ........+++|+.+.+.+.-+
T Consensus 444 leF~I~y~t~~qe~WDNNdg~NY~i~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~r~~s~~~~~~~~~~~~~~~~~~~~s 523 (526)
T KOG3986|consen 444 LEFCIRYQTNGQEYWDNNDGKNYIIDVVTKSPDTSMFTREYANSTSLPSNPRSSTRFESPRRWGTLFPEWDEMEGYESSS 523 (526)
T ss_pred eEEEEEeccCCceeeccCCCcceEEEeecCCCcccccchhccCccCCccCccccccccCccccceeeeccCCccCccccC
Confidence 999999999999999999999999998844441 11111 00011 111111 1222335588999999999999
Q ss_pred CCC
Q psy7210 157 PYW 159 (159)
Q Consensus 157 ~yw 159 (159)
|||
T Consensus 524 ~y~ 526 (526)
T KOG3986|consen 524 PYR 526 (526)
T ss_pred CCC
Confidence 997
No 3
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=98.61 E-value=2.2e-07 Score=66.59 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=49.1
Q ss_pred eCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCeeeeecCCCccEE
Q psy7210 30 RNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYI 109 (159)
Q Consensus 30 ~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~eyWDNN~G~NY~ 109 (159)
..|+-...|.+++.+++|.....+...-...... -+.|+.+|.+|.....|.||+.-. ..-||||+|+||.
T Consensus 13 ~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~------~~~~~~tv~vP~~a~~~dfvF~dg---~~~wDNN~g~nY~ 83 (87)
T PF03423_consen 13 TALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDE------GGWWKATVDVPEDAYVMDFVFNDG---AGNWDNNNGANYH 83 (87)
T ss_dssp -SSS-S-EEEEEETTS-B-SSS-EE-EEESS---------TTEEEEEEE--TTTSEEEEEEE-S---SS-EESTTTS-EE
T ss_pred CCCCCCCcEEEEecCCCCCcCCCCCcceeeeeec------CCEEEEEEEEcCCceEEEEEEcCC---CCcEeCCCCccEE
Confidence 4555678999999999999987766555442221 368999999998899999999754 6699999999999
Q ss_pred EEe
Q psy7210 110 IKK 112 (159)
Q Consensus 110 v~~ 112 (159)
+.+
T Consensus 84 ~~V 86 (87)
T PF03423_consen 84 FPV 86 (87)
T ss_dssp EES
T ss_pred EEc
Confidence 875
No 4
>PLN02316 synthase/transferase
Probab=96.33 E-value=0.011 Score=58.94 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=60.5
Q ss_pred eCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEc-CCeeeeecCCCccE
Q psy7210 30 RNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKT-ENEEFWDNNNSKNY 108 (159)
Q Consensus 30 ~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v-~g~eyWDNN~G~NY 108 (159)
.+|+-..+|.|+..||+|..-..+.-.-+.+... +-|.|...+.+|.....+.|.+.=.. +++..||||+|++|
T Consensus 340 ~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~-----~g~ww~a~v~vP~~A~~mDfVFsdg~~~~~~~yDNn~~~Dy 414 (1036)
T PLN02316 340 GPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEK-----DGDWWYAEVVVPERALVLDWVFADGPPGNARNYDNNGRQDF 414 (1036)
T ss_pred CCCCCCCcEEEEEeEcCCCCCCcccceeecccCC-----CCCEEEEEEecCCCceEEEEEEecCCcccccccccCCCcce
Confidence 5688889999999999999744332233333221 13689999999999999999987665 34679999999999
Q ss_pred EEEee
Q psy7210 109 IIKKG 113 (159)
Q Consensus 109 ~v~~~ 113 (159)
++.+.
T Consensus 415 h~~v~ 419 (1036)
T PLN02316 415 HAIVP 419 (1036)
T ss_pred eeecC
Confidence 99876
No 5
>PLN02316 synthase/transferase
Probab=95.63 E-value=0.037 Score=55.21 Aligned_cols=74 Identities=20% Similarity=0.375 Sum_probs=56.6
Q ss_pred eCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCeeeeecCCCccEE
Q psy7210 30 RNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYI 109 (159)
Q Consensus 30 ~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~eyWDNN~G~NY~ 109 (159)
..|+-+..|.|.+.||+|+--. ....-..+. .+-|-|.-.+.+|+..-.+.|.+. +|++.||||+|++|.
T Consensus 165 ~~L~~~~~v~i~~gfN~W~~~~-f~~~~~k~~------~~g~ww~~~v~Vp~~A~~ldfVf~---~g~~~yDNN~~~Df~ 234 (1036)
T PLN02316 165 STLANEPDVLIMGAFNGWRWKS-FTERLEKTE------LGGDWWSCKLHIPKEAYKMDFVFF---NGQNVYDNNDHKDFC 234 (1036)
T ss_pred CccCCCCceEEEeccccccccc-cceeccccc------cCCCeEEEEEecCccceEEEEEEe---CCccccccCCCCceE
Confidence 4677789999999999999732 222211111 135899999999988888888874 678899999999999
Q ss_pred EEee
Q psy7210 110 IKKG 113 (159)
Q Consensus 110 v~~~ 113 (159)
+.+.
T Consensus 235 ~~V~ 238 (1036)
T PLN02316 235 VEIE 238 (1036)
T ss_pred EEeC
Confidence 9886
No 6
>PRK10785 maltodextrin glucosidase; Provisional
Probab=84.44 E-value=32 Score=32.37 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=56.3
Q ss_pred CCCCeEeEEEEEeCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCe
Q psy7210 18 RSVLMFPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 97 (159)
Q Consensus 18 ~s~~~L~G~v~V~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~ 97 (159)
.++..|.-.++|.-=..-+.|.||+..|+-.. .+++....+.. ++|.|...|+++...+.+.++.+-..++.
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~--~~~m~~~~~~~------~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDNEEY--LLPMEKQRSQP------QVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCCCEE--EEEeEEeecCC------CceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 46778888888874344689999999888543 34555554332 47899888887645667777777777777
Q ss_pred eeeecCCC
Q psy7210 98 EFWDNNNS 105 (159)
Q Consensus 98 eyWDNN~G 105 (159)
.+|=++.|
T Consensus 88 ~~~~~~~g 95 (598)
T PRK10785 88 QRWFTPQG 95 (598)
T ss_pred EEEEcCCc
Confidence 77766655
No 7
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=72.64 E-value=25 Score=24.14 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=34.5
Q ss_pred EEEeCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCe
Q psy7210 27 VKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 97 (159)
Q Consensus 27 v~V~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~ 97 (159)
++... -.++|.|.=+|++|+. .++..+.. +.|...+.||++ ..+| +|.++|.
T Consensus 6 f~~~~--~a~~V~v~G~F~~W~~--~~pm~~~~-----------~~~~~~~~L~~g--~y~Y--kF~Vdg~ 57 (79)
T cd02859 6 FVWPG--GGKEVYVTGSFDNWKK--KIPLEKSG-----------KGFSATLRLPPG--KYQY--KFIVDGE 57 (79)
T ss_pred EEEcC--CCcEEEEEEEcCCCCc--cccceECC-----------CCcEEEEEcCCC--CEEE--EEEECCE
Confidence 34444 5689999999999986 34444431 128889998863 4444 6677774
No 8
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=68.22 E-value=39 Score=23.75 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=50.5
Q ss_pred CeEeEEEEEeCcCcceEEEEEEecCCC--ceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCee
Q psy7210 21 LMFPGTVKVRNLSFKKEVIIRYSTNNW--TTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENEE 98 (159)
Q Consensus 21 ~~L~G~v~V~NlafeK~V~VRyT~D~W--~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~e 98 (159)
..|.-.|++..- --++|.|++.-|.| .. ..+++....+.+ ..|.|...|+++ .+.+.....-..+++.
T Consensus 16 ~~v~irlr~~~~-~v~~v~l~~~~~~~~~~~-~~~~M~~~~~~~------~~~~~~~~i~~~--~~~~~Y~F~l~~~~~~ 85 (116)
T cd02857 16 DTLHIRLRTKKG-DVAKVYLRYGDPYDKGEE-EEVPMRKDGSDE------LFDYWEATLPPP--TGRLRYYFELVDDGET 85 (116)
T ss_pred CEEEEEEEecCC-CccEEEEEEECCCCCCCc-eEEEEEEeeeCC------ceeEEEEEEecC--CcEEEEEEEEEcCCEE
Confidence 678888888743 57899999998853 32 245665554332 478998888875 3777776666667777
Q ss_pred eeecCC
Q psy7210 99 FWDNNN 104 (159)
Q Consensus 99 yWDNN~ 104 (159)
+|=++.
T Consensus 86 ~~y~~~ 91 (116)
T cd02857 86 VWYGEE 91 (116)
T ss_pred EEEeCC
Confidence 665553
No 9
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=65.12 E-value=51 Score=24.01 Aligned_cols=79 Identities=10% Similarity=0.252 Sum_probs=56.5
Q ss_pred CCCCeEeEEEEEeCcCcceEEEEEEecCC-C---ceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEE
Q psy7210 18 RSVLMFPGTVKVRNLSFKKEVIIRYSTNN-W---TTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYK 93 (159)
Q Consensus 18 ~s~~~L~G~v~V~NlafeK~V~VRyT~D~-W---~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~ 93 (159)
.++..|.-.++++.=.- ++|.|+|.-+. | .+...++.....+.. .+|-|.-.|+++ ..++..+..-.
T Consensus 18 ~~~~~l~IRLRt~k~Dv-~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~------~fDyye~~l~~~--~~r~~Y~F~l~ 88 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDV-EKVFLVYGDPYEEEGKWTYKSVEMEKIASDE------LFDYYEATLKLP--EKRLRYYFELE 88 (120)
T ss_dssp ECTTEEEEEEEEETTT--SEEEEEEEETTSETTCECEEEEEEEEEEEES------SEEEEEEEEE-T--TSEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCC-CEEEEEECCCccccccceEEEEEeEEEEeCC------CeEEEEEEEECC--CCeEEEEEEEE
Confidence 36778999999975443 38999998754 2 344555665554432 589999898886 45788888888
Q ss_pred cCCeeeeecCCC
Q psy7210 94 TENEEFWDNNNS 105 (159)
Q Consensus 94 v~g~eyWDNN~G 105 (159)
.+|..+|=+-.|
T Consensus 89 ~~~~~~~y~~~G 100 (120)
T PF02903_consen 89 DGGETYYYGERG 100 (120)
T ss_dssp ETTEEEEEETTE
T ss_pred eCCEEEEEeCCc
Confidence 889888888777
No 10
>PF02248 Como_SCP: Small coat protein; InterPro: IPR003182 The virus capsid is composed 60 icosahedral units, each of which is composed of one copy of each of the two coat proteins. This family contains the small coat protein (SCP) [] of the comoviridae viral family.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1PGW_1 1PGL_1 1BMV_1 1NY7_1 2BFU_S.
Probab=63.71 E-value=82 Score=25.89 Aligned_cols=74 Identities=19% Similarity=0.407 Sum_probs=43.3
Q ss_pred EEEEEEe---cCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEE--cCCeeeeecCCC--ccEE
Q psy7210 37 EVIIRYS---TNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYK--TENEEFWDNNNS--KNYI 109 (159)
Q Consensus 37 ~V~VRyT---~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~--v~g~eyWDNN~G--~NY~ 109 (159)
+|.++=. .-+|+++.++.-+-..+.. -++-+.+.|.-| ....++|.+.-. ++|=|-|.++-| +-|.
T Consensus 72 kVv~~gssvkrsdw~st~qi~l~~s~n~~------s~~a~~~~is~p-~s~el~Fs~eVvGPn~GFem~~s~~~nqt~w~ 144 (182)
T PF02248_consen 72 KVVMRGSSVKRSDWRSTSQISLTNSENSS------SYNARSWVISEP-HSGELEFSREVVGPNDGFEMWWSDWGNQTFWK 144 (182)
T ss_dssp EEEEEETTS-CCC--BEEEEEEESSSSTT------S--SEEEEEBSS-SCEEEEEEEEE-BTCCC-B-TT-TTTT----E
T ss_pred EEEEEecccccccccceEEEEEEecCCcc------cccceeEEEcCC-CceeEEeeEEEEcCCchhhhccccccCceEEE
Confidence 3566663 3579998877655443332 277888888755 478899998876 688889988854 5688
Q ss_pred EEeeecCC
Q psy7210 110 IKKGIAPP 117 (159)
Q Consensus 110 v~~~~~~p 117 (159)
+.+.+..|
T Consensus 145 L~~~i~N~ 152 (182)
T PF02248_consen 145 LEFAIGNP 152 (182)
T ss_dssp EEEEECST
T ss_pred EEEEEcCc
Confidence 88886655
No 11
>KOG3986|consensus
Probab=59.60 E-value=5.4 Score=37.51 Aligned_cols=56 Identities=25% Similarity=0.401 Sum_probs=45.4
Q ss_pred CCCeEeEEEEEeCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEc
Q psy7210 19 SVLMFPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISI 79 (159)
Q Consensus 19 s~~~L~G~v~V~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~l 79 (159)
....+.+-..|.|.++++.|.+..|.|+|...+++.+.+...... ..|.|.|-+.+
T Consensus 205 ~n~kvf~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~p~~~ 260 (526)
T KOG3986|consen 205 ANVKVFNENDVHNPSFDLHFLIKLTLDNWSDLHEGLSQDNNQGTP-----CVDLFKFPIDI 260 (526)
T ss_pred cceeeeccccccCccccceeeccccCCCccccccccccccccCcc-----ccccccCcccc
Confidence 344566666777899999999999999999999999999887654 47888887754
No 12
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=46.96 E-value=86 Score=20.97 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCCCeEeEEEEEeCcCc--ceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcC
Q psy7210 18 RSVLMFPGTVKVRNLSF--KKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTE 95 (159)
Q Consensus 18 ~s~~~L~G~v~V~Nlaf--eK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~ 95 (159)
..+..+.-++.|+|.+- ...+.|++..++=.. .-.++.+..++ ....+.|.+..+ ..+...+.+.....
T Consensus 16 ~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~----~~~~i~~L~~g----~~~~v~~~~~~~-~~G~~~i~~~iD~~ 86 (101)
T PF07705_consen 16 VPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV----STVTIPSLAPG----ESETVTFTWTPP-SPGSYTIRVVIDPD 86 (101)
T ss_dssp ETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE----EEEEESEB-TT----EEEEEEEEEE-S-S-CEEEEEEEESTT
T ss_pred cCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee----ccEEECCcCCC----cEEEEEEEEEeC-CCCeEEEEEEEeeC
Confidence 34778899999999955 478999998887332 33444444432 467888888776 45667766666654
Q ss_pred C
Q psy7210 96 N 96 (159)
Q Consensus 96 g 96 (159)
+
T Consensus 87 n 87 (101)
T PF07705_consen 87 N 87 (101)
T ss_dssp T
T ss_pred C
Confidence 4
No 13
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=45.73 E-value=1.1e+02 Score=21.70 Aligned_cols=39 Identities=26% Similarity=0.578 Sum_probs=24.6
Q ss_pred eEEEEEEEEcCCCCCeEEE-EEEEEcCCeeeeecCCCccEEEE
Q psy7210 70 YDTFAFQISIPKSAHQIEF-CIAYKTENEEFWDNNNSKNYIIK 111 (159)
Q Consensus 70 ~D~F~F~i~lp~~~~~leF-cIrY~v~g~eyWDNN~G~NY~v~ 111 (159)
+..|...+.||... .+|| +|...-+|...|.+. .|..+.
T Consensus 49 ~~~W~~~~~lp~~~-~~eyK~~~~~~~~~~~WE~g--~nr~~~ 88 (101)
T cd05807 49 YPNWYYDVSVPAGT-TIEFKFIKKNGDNTVTWESG--SNHTYT 88 (101)
T ss_pred CCcEEEEEEcCCCC-cEEEEEEEECCCCCEEEEeC--CCEEEe
Confidence 45688899998643 4555 333344688899874 554443
No 14
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=45.03 E-value=93 Score=20.82 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=35.7
Q ss_pred CCeEeEEEEEeCcCcc--eEEEEEEec-CCCc-eeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCC----CeEEEEEE
Q psy7210 20 VLMFPGTVKVRNLSFK--KEVIIRYST-NNWT-TFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSA----HQIEFCIA 91 (159)
Q Consensus 20 ~~~L~G~v~V~Nlafe--K~V~VRyT~-D~W~-T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~----~~leFcIr 91 (159)
|..+.-++.|.|..-. +.|.++... ++|. +....... ...++ ....+.|.+..|... -.|.+-++
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~---~l~pG----~s~~~~~~V~vp~~a~~G~y~v~~~a~ 76 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVP---SLPPG----ESVTVTFTVTVPADAAPGTYTVTVTAR 76 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE-----B-TT----SEEEEEEEEEE-TT--SEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccc---cCCCC----CEEEEEEEEECCCCCCCceEEEEEEEE
Confidence 5567788999998754 457777776 8999 22222222 33322 367888999988642 24666666
Q ss_pred EE
Q psy7210 92 YK 93 (159)
Q Consensus 92 Y~ 93 (159)
|+
T Consensus 77 y~ 78 (78)
T PF10633_consen 77 YT 78 (78)
T ss_dssp --
T ss_pred eC
Confidence 53
No 15
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=41.33 E-value=91 Score=21.11 Aligned_cols=44 Identities=11% Similarity=0.267 Sum_probs=28.5
Q ss_pred eEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCC
Q psy7210 36 KEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTEN 96 (159)
Q Consensus 36 K~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g 96 (159)
+.|.|.=+|++|.. ++.... . -..|+..+.|+++ . +..+|.++|
T Consensus 14 ~~V~v~G~fn~W~~---~~m~~~---~-------~G~w~~~~~l~~G--~--y~Ykf~vdg 57 (82)
T cd02861 14 DSVYLAGSFNNWNA---IPMERE---G-------DGLWVVTVELRPG--R--YEYKFVVDG 57 (82)
T ss_pred CEEEEEeECCCCCc---ccCEEC---C-------CCcEEEEEeCCCC--c--EEEEEEECC
Confidence 89999999999972 222211 1 1368888887753 2 456667776
No 16
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=36.55 E-value=1.4e+02 Score=20.41 Aligned_cols=75 Identities=15% Similarity=0.272 Sum_probs=39.3
Q ss_pred EeEEEEEeCcCcceEEEEEE---ecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEE-EEEcCCee
Q psy7210 23 FPGTVKVRNLSFKKEVIIRY---STNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCI-AYKTENEE 98 (159)
Q Consensus 23 L~G~v~V~NlafeK~V~VRy---T~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcI-rY~v~g~e 98 (159)
|...|.. .+.+-..|.|-= .+.+|....-++..+. ..+.|...+.+|... .+||-. ....+|..
T Consensus 3 v~F~v~~-~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~----------~~~~W~~~v~l~~~~-~~eYKy~~~~~~~~~ 70 (95)
T cd05808 3 VTFNVTA-TTVWGQNVYVVGNVPELGNWSPANAVALSAA----------TYPVWSGTVDLPAGT-AIEYKYIKKDGSGTV 70 (95)
T ss_pred EEEEEEE-ECCCCCEEEEEeCcHHhCCCChhhCccCCCC----------CCCCEEEEEEeCCCC-eEEEEEEEECCCCcE
Confidence 4455555 455666665533 2457865432222211 236788999998643 444422 12234666
Q ss_pred eeecCCCccEEEE
Q psy7210 99 FWDNNNSKNYIIK 111 (159)
Q Consensus 99 yWDNN~G~NY~v~ 111 (159)
.|.+.. |-.+.
T Consensus 71 ~WE~~~--nr~~~ 81 (95)
T cd05808 71 TWESGP--NRTAT 81 (95)
T ss_pred EEecCC--CEEEE
Confidence 787654 54444
No 17
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=35.04 E-value=1.6e+02 Score=20.82 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=34.3
Q ss_pred CCCeEeEEEEEeCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCC
Q psy7210 19 SVLMFPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPK 81 (159)
Q Consensus 19 s~~~L~G~v~V~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~ 81 (159)
+...+.|+.+ +||..|.+|..-.+=....+-.+.=.... ..+-.|+.+|.++.
T Consensus 16 sp~~V~G~A~----~FEgtv~~rv~D~~g~vl~e~~~~a~~g~------~~~g~F~~tv~~~~ 68 (88)
T PF10648_consen 16 SPVKVSGKAR----VFEGTVNIRVRDGHGEVLAEGFVTATGGA------PSWGPFEGTVSFPP 68 (88)
T ss_pred CCEEEEEEEE----EeeeEEEEEEEcCCCcEEEEeeEEeccCC------CcccceEEEEEeCC
Confidence 4567888866 79999999998766444322222211111 24678999999874
No 18
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=34.66 E-value=2e+02 Score=21.74 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=46.2
Q ss_pred EEEEEeCcCcc----eEEEEEEecCCCceeeEEEEEEeCCCCCCC-CCceeEEEEEEEEcCCCCCeEEEEEEEEc
Q psy7210 25 GTVKVRNLSFK----KEVIIRYSTNNWTTFTDVKCAYVPSATPSS-ITIVYDTFAFQISIPKSAHQIEFCIAYKT 94 (159)
Q Consensus 25 G~v~V~Nlafe----K~V~VRyT~D~W~T~~dv~A~yv~~~~~~~-~~~~~D~F~F~i~lp~~~~~leFcIrY~v 94 (159)
|.+.|+-+||. .-..|-.++|+=+|+.+..-....+....+ ....+-.|+|.++++...+..++.+|-.-
T Consensus 27 ~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D 101 (131)
T PF03404_consen 27 GTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATD 101 (131)
T ss_dssp EEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEE
T ss_pred cEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEee
Confidence 49999999984 577888999998888755444433310000 01347899999999865678888888764
No 19
>PF07987 DUF1775: Domain of unkown function (DUF1775); InterPro: IPR012533 GLE1 is an essential nuclear export factor involved in RNA export.; PDB: 3ESM_A.
Probab=34.46 E-value=98 Score=24.27 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceeEEEEEEEEcCCCCCeEEE-EEEEEcCCee-eee
Q psy7210 68 IVYDTFAFQISIPKSAHQIEF-CIAYKTENEE-FWD 101 (159)
Q Consensus 68 ~~~D~F~F~i~lp~~~~~leF-cIrY~v~g~e-yWD 101 (159)
..+|.|.|+..||.....|.| ++++..+|.. -|+
T Consensus 90 g~~~eF~~~~~lP~~~~tl~fp~~Qty~dG~vV~W~ 125 (145)
T PF07987_consen 90 GQFDEFVVSAPLPADGTTLYFPAVQTYEDGSVVRWI 125 (145)
T ss_dssp T-EEEEEEEE----SSSEEE--EEEEETTS-EEEE-
T ss_pred CcceEEEEEEEcCCCCceEEEeEEEEeCCCcEeecc
Confidence 479999999999977788888 5566667766 787
No 20
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=30.43 E-value=2.5e+02 Score=25.27 Aligned_cols=69 Identities=7% Similarity=0.151 Sum_probs=47.1
Q ss_pred eEEEEEeCcCcc----eEEEEEEecCCCceeeEEEEEEeCCCCC--CCCCceeEEEEEEEEcCCCCCeEEEEEEEEc
Q psy7210 24 PGTVKVRNLSFK----KEVIIRYSTNNWTTFTDVKCAYVPSATP--SSITIVYDTFAFQISIPKSAHQIEFCIAYKT 94 (159)
Q Consensus 24 ~G~v~V~Nlafe----K~V~VRyT~D~W~T~~dv~A~yv~~~~~--~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v 94 (159)
.|.+.|+-+||. .-..|..++|+=+|+++..= ...... ......+-.|+|.++++...+..++++|-.-
T Consensus 285 ~~~~~i~G~A~sg~g~~I~rVeVS~DgG~tW~~A~L--~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D 359 (386)
T cd02112 285 AETYTMKGYAYAGGGRRVTRVEVSLDDGKSWKLASI--DYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWD 359 (386)
T ss_pred CCeEEEEEEEEcCCCCcEEEEEEEcCCCCCceeCCC--CCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEc
Confidence 579999999994 56889999998777764432 111110 0011247899988877655678899998864
No 21
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=27.08 E-value=2.2e+02 Score=19.71 Aligned_cols=81 Identities=15% Similarity=0.296 Sum_probs=45.1
Q ss_pred EeEEEEEeCcCcceEEEEEEecC---CCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEE-EEEEEcCCee
Q psy7210 23 FPGTVKVRNLSFKKEVIIRYSTN---NWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEF-CIAYKTENEE 98 (159)
Q Consensus 23 L~G~v~V~NlafeK~V~VRyT~D---~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leF-cIrY~v~g~e 98 (159)
+...|.+ .+.+...|.|-=... +|..-.-++..+..... ++..|...|.||. +..+|| .|....+|..
T Consensus 4 V~F~v~~-~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~------~~~~W~~~v~lp~-~~~~eYKy~i~~~~g~~ 75 (96)
T PF00686_consen 4 VTFRVNY-QTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTE------NYPIWSATVDLPA-GTPFEYKYVIKDADGNV 75 (96)
T ss_dssp EEEEESE----TTEEEEEEESSGGGTTTSGGGSBESEBESSSS------TTTSEEEEEEEET-TSEEEEEEEEEETTSEE
T ss_pred EEEEEEe-ECCCCCEEEEEECcHHhCCCChHhccccccccCCC------CCCeEEEEEECcC-CCEEEEEEEEEeCCCCE
Confidence 4444533 666667777755543 68775545555543311 3568989999987 444443 1224556788
Q ss_pred eeecCCCccEEEEee
Q psy7210 99 FWDNNNSKNYIIKKG 113 (159)
Q Consensus 99 yWDNN~G~NY~v~~~ 113 (159)
.|.. |.|-.+...
T Consensus 76 ~WE~--g~nR~~~~~ 88 (96)
T PF00686_consen 76 IWES--GENRVLTVP 88 (96)
T ss_dssp EE-S--SSEEEEE--
T ss_pred EECC--CCCEEEECC
Confidence 9988 677666654
No 22
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=27.07 E-value=1.8e+02 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.483 Sum_probs=24.2
Q ss_pred eEEEEEEEEcCCCCCeEEE-EEEEEcCCeeeeecCCCccE
Q psy7210 70 YDTFAFQISIPKSAHQIEF-CIAYKTENEEFWDNNNSKNY 108 (159)
Q Consensus 70 ~D~F~F~i~lp~~~~~leF-cIrY~v~g~eyWDNN~G~NY 108 (159)
+..|.-.+.||.. ..+|| +|+..-+|..-|.+...+.+
T Consensus 49 ~~~W~~~~~lp~~-~~veyK~v~~~~~g~v~WE~g~Nr~~ 87 (103)
T cd05820 49 WPDWFVVASVPAG-TYIEFKFLKAPADGTGTWEGGSNHAY 87 (103)
T ss_pred CCCEEEEEEcCCC-CcEEEEEEEECCCCCEEEEeCCCEeE
Confidence 4468889999864 35555 34444577889977544333
No 23
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=26.65 E-value=2.3e+02 Score=19.88 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=43.3
Q ss_pred EeEEEEEeCcCcceEEEEEEe---cCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEE-EEEEEcC-Ce
Q psy7210 23 FPGTVKVRNLSFKKEVIIRYS---TNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEF-CIAYKTE-NE 97 (159)
Q Consensus 23 L~G~v~V~NlafeK~V~VRyT---~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leF-cIrY~v~-g~ 97 (159)
+...|.+..+.+-..|.|-=. +-+|....-++..+ .....|...+.+|.....+|| .+.+.-+ +.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~----------~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~~~ 71 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSD----------VGFPIWEADIDISKDSFPFEYKYIIANKDSGV 71 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCC----------CCCCcEEEEEEeCCCCccEEEEEEEEeCCCCc
Confidence 344556666766666666322 34777543222211 124689899999864444554 2233334 67
Q ss_pred eeeecCCCccEEEEe
Q psy7210 98 EFWDNNNSKNYIIKK 112 (159)
Q Consensus 98 eyWDNN~G~NY~v~~ 112 (159)
.-|.. |.|..+..
T Consensus 72 ~~WE~--g~nr~~~~ 84 (99)
T cd05816 72 VSWEN--GPNRELSA 84 (99)
T ss_pred EEEEc--CCCeEEEC
Confidence 88977 56655544
No 24
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=24.12 E-value=4.3e+02 Score=23.07 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred cceEEEEEEecCC-CceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEE-EEcCCee-eeecCCCccEEE
Q psy7210 34 FKKEVIIRYSTNN-WTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIA-YKTENEE-FWDNNNSKNYII 110 (159)
Q Consensus 34 feK~V~VRyT~D~-W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIr-Y~v~g~e-yWDNN~G~NY~v 110 (159)
-++.+.++||.++ ...+.|....|-.-.++ .-....+..+++|.+|.....+++.+. -..++.. .+.+++.-.+..
T Consensus 95 ~~~~~~~~Y~v~~~v~~~~D~~el~w~~~g~-~~~~~i~~v~v~i~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~ 173 (511)
T PF09972_consen 95 GTHTYTISYTVKNAVTNYSDVAELYWNFIGS-GWDVPIENVTVTITLPKPVDNSKAWGHPGPYGGTVEIDDDDGTVTFTT 173 (511)
T ss_pred CeEEEEEEEEEECceEEcCCeeEEEEEEecC-CCCCccceEEEEEECCCCCcceEEEEeccCCCccceeeecCCEEEEEE
Confidence 4589999999954 44556665433322211 112347889999999965445666666 2333433 466666555554
Q ss_pred Ee
Q psy7210 111 KK 112 (159)
Q Consensus 111 ~~ 112 (159)
..
T Consensus 174 ~~ 175 (511)
T PF09972_consen 174 DN 175 (511)
T ss_pred ec
Confidence 43
No 25
>PF14741 GH114_assoc: N-terminal glycosyl-hydrolase-114-associated domain
Probab=22.47 E-value=1.3e+02 Score=23.38 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=28.6
Q ss_pred EecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCC---CCCeEEEEEEEEc
Q psy7210 42 YSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPK---SAHQIEFCIAYKT 94 (159)
Q Consensus 42 yT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~---~~~~leFcIrY~v 94 (159)
-+.|+|.+|.+..+... + ..-.|.|.++... ....|.|-+.|+.
T Consensus 9 ~s~D~~~~YIefa~~~~---~------~~~~f~F~~Ps~v~~~~~~tlt~~~~~~g 55 (129)
T PF14741_consen 9 VSQDNWASYIEFAPTSG---G------AQYEFYFNLPSAVGDATVFTLTLGANYRG 55 (129)
T ss_pred cccccceeeEEEeccCC---C------eeEEEEEcCccccCCCceEEEEEEEeecC
Confidence 46789999887776544 1 2345666655422 2368999999984
No 26
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=22.12 E-value=2.7e+02 Score=21.96 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=26.6
Q ss_pred CceeEEEEEEEEcCCC-CCeEEEE-EEEE-cCCeeeeecC
Q psy7210 67 TIVYDTFAFQISIPKS-AHQIEFC-IAYK-TENEEFWDNN 103 (159)
Q Consensus 67 ~~~~D~F~F~i~lp~~-~~~leFc-IrY~-v~g~eyWDNN 103 (159)
...+|.|.|++.+++. +.+|.|= +++. -++..-|+--
T Consensus 92 ~~~f~eF~~~~~~~~~~~~~l~Fpa~Qty~dg~vv~W~e~ 131 (152)
T cd08545 92 DGQFDEFVLSAKLPPDPGDTLYFPAVQTCSDGGVVRWTEP 131 (152)
T ss_pred CCceEEEEEEeecCCCCCCEEEEeeEEEeCCCCeEEcccC
Confidence 3579999999999887 7888884 4544 3455668643
No 27
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=20.87 E-value=2.8e+02 Score=18.73 Aligned_cols=40 Identities=18% Similarity=0.516 Sum_probs=22.8
Q ss_pred eEEEEEEEEcCC-CCCeEEE-EEEEEcCCeeeeecCCCccEEEE
Q psy7210 70 YDTFAFQISIPK-SAHQIEF-CIAYKTENEEFWDNNNSKNYIIK 111 (159)
Q Consensus 70 ~D~F~F~i~lp~-~~~~leF-cIrY~v~g~eyWDNN~G~NY~v~ 111 (159)
...|...+.+|. ....++| .+.+.-++...|.... |..+.
T Consensus 42 ~~~W~~~v~~~~~~~~~~~yKy~~~~~~~~~~wE~~~--~r~~~ 83 (96)
T cd05467 42 YPLWTGEIPLPAPEGQVIEYKYVIVDDDGNVQWESGS--NRVLT 83 (96)
T ss_pred CCcEEEEEEecCCCCCeEEEEEEEECCCCCEEeccCC--CeEEE
Confidence 357888888876 2334443 2223335677897765 44443
Done!