Query psy7210
Match_columns 159
No_of_seqs 105 out of 415
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:58:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djm_A Glucoamylase A; beta sa 100.0 2.6E-38 8.8E-43 234.5 9.9 97 2-111 6-105 (106)
2 2eef_A Protein phosphatase 1, 100.0 4.7E-38 1.6E-42 246.8 9.4 103 3-114 34-139 (156)
3 4eib_A Glucoamylase; beta barr 99.9 4E-23 1.4E-27 153.5 9.4 79 3-95 27-109 (109)
4 2laa_A Beta/alpha-amylase; SBD 98.2 1.3E-06 4.6E-11 64.0 5.3 65 35-113 15-82 (104)
5 2c3v_A Alpha-amylase G-6; carb 98.2 1.5E-06 5E-11 63.6 5.4 66 35-113 20-87 (102)
6 4eib_A Glucoamylase; beta barr 97.0 0.0001 3.6E-09 54.5 -0.1 21 96-117 2-22 (109)
7 3nme_A Ptpkis1 protein, SEX4 g 62.5 15 0.00051 30.0 5.9 49 34-97 180-228 (294)
8 2qlv_B Protein SIP2, protein S 43.7 37 0.0013 27.5 5.3 49 35-97 14-62 (252)
9 1z0n_A 5'-AMP-activated protei 31.4 1E+02 0.0035 20.8 5.3 46 34-97 20-65 (96)
10 4aee_A Alpha amylase, catalyti 25.4 66 0.0023 29.1 4.3 50 34-100 29-78 (696)
11 4b9f_A Cellulosomal-scaffoldin 21.0 1.1E+02 0.0038 22.7 4.2 28 17-44 12-43 (152)
12 2nud_C RIN4, RPM1-interacting 20.1 30 0.001 20.2 0.6 17 99-115 12-31 (35)
No 1
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=100.00 E-value=2.6e-38 Score=234.54 Aligned_cols=97 Identities=25% Similarity=0.505 Sum_probs=88.0
Q ss_pred ceeeeecCccccCCCCCCCCeEeEEEEEeCcCcceEEEEEEe--cCCCce-eeEEEEEEeCCCCCCCCCceeEEEEEEEE
Q psy7210 2 TKCICHDDTNEDTNPSRSVLMFPGTVKVRNLSFKKEVIIRYS--TNNWTT-FTDVKCAYVPSATPSSITIVYDTFAFQIS 78 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~s~s~~~L~G~v~V~NlafeK~V~VRyT--~D~W~T-~~dv~A~yv~~~~~~~~~~~~D~F~F~i~ 78 (159)
++.|||.+ |+.++..|.|+|+|+||||||+|.|||| +|+|+| ++|++|.|+++.+. .++|+|+|+|+
T Consensus 6 ~~~V~LE~------~~~~~~~l~GtV~V~NlafeK~V~VR~T~~~D~W~t~~~dv~a~y~~~~~~----~~~D~F~F~i~ 75 (106)
T 2djm_A 6 SASVQLDS------YNYDGSTFSGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASFSGPISG----SNYEYWTFSAS 75 (106)
T ss_dssp SSSEEEEE------EEESSSCEEEEEEECCSSSCEEEEEEEEETTSSCSSCCCEEECEEEEECTT----SSCEEEEEEEC
T ss_pred CCcEEEEE------EEECCCEEEEEEEEeecCcCcEEEEEECCCcCCCccccEEEEEEEecCCCC----CCeEEEEEEEE
Confidence 45677766 7778899999999999999999999999 999999 99999999997643 47999999999
Q ss_pred cCCCCCeEEEEEEEEcCCeeeeecCCCccEEEE
Q psy7210 79 IPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIK 111 (159)
Q Consensus 79 lp~~~~~leFcIrY~v~g~eyWDNN~G~NY~v~ 111 (159)
||+ .+||||||+++|+||||||+|+||+|+
T Consensus 76 l~~---~~eFcIrY~v~g~eyWDNN~g~NY~v~ 105 (106)
T 2djm_A 76 VKG---IKEFYIKYEVSGKTYYDNNNSANYQVS 105 (106)
T ss_dssp CSS---EEEEEEEEEESSCEEEECSSSSCEECC
T ss_pred CCC---CeEEEEEEEECCcEEEcCCCCeeEEEe
Confidence 974 689999999999999999999999985
No 2
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.7e-38 Score=246.85 Aligned_cols=103 Identities=35% Similarity=0.688 Sum_probs=92.3
Q ss_pred eeeeecCccccCCCCCCCCeEeEEEEEeCcCcceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCC
Q psy7210 3 KCICHDDTNEDTNPSRSVLMFPGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKS 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~s~s~~~L~G~v~V~NlafeK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~ 82 (159)
+.||+.+ |..++..|.|+|+|+||||||+|.||||+|+|+|++|++|.|+++..++ .++|+|+|+|.||+.
T Consensus 34 ~~V~LE~------~~~~~~~l~GtV~V~NlafeK~V~VR~T~D~Wkt~~dv~a~y~~~~~~~---~~~D~F~F~I~lp~~ 104 (156)
T 2eef_A 34 DHVCLEN------CVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYAG---SDRDTFSFDISLPEK 104 (156)
T ss_dssp SSEEEEE------EEEETTEEEEEEEECCSSSCCEEEEEEESSTTSSEEEEECEECCCSSSC---SSSCEEEECCCCCSC
T ss_pred CcEEEEE------EEeCCCEEEEEEEEeccCCCcEEEEEEeECCCcccEEEEEEEccccCCC---CCceEEEEEEECCCc
Confidence 4566655 7777889999999999999999999999999999999999999886432 358999999999873
Q ss_pred ---CCeEEEEEEEEcCCeeeeecCCCccEEEEeee
Q psy7210 83 ---AHQIEFCIAYKTENEEFWDNNNSKNYIIKKGI 114 (159)
Q Consensus 83 ---~~~leFcIrY~v~g~eyWDNN~G~NY~v~~~~ 114 (159)
..+|||||||+++|+||||||+|+||+|.+.+
T Consensus 105 ~~~~~~leFcIrY~v~g~eyWDNN~G~NY~v~~~~ 139 (156)
T 2eef_A 105 IQSYERMEFAVYYECNGQTYWDSNRGKNYRIIRAE 139 (156)
T ss_dssp CCTTSCCEEEEEEEETTEEEEESGGGSCCCEEETT
T ss_pred cCCCcEEEEEEEEEeCCCEEecCCCCeeEEEEEEE
Confidence 68999999999999999999999999999983
No 3
>4eib_A Glucoamylase; beta barrel, starch binding, amylose, hydrolase; 1.86A {Rhizopus oryzae}
Probab=99.89 E-value=4e-23 Score=153.52 Aligned_cols=79 Identities=22% Similarity=0.452 Sum_probs=70.4
Q ss_pred eeeeecCccccCCCCCCCCeEeEEEEEeCcCcceEEEEEEec--CCCce--eeEEEEEEeCCCCCCCCCceeEEEEEEEE
Q psy7210 3 KCICHDDTNEDTNPSRSVLMFPGTVKVRNLSFKKEVIIRYST--NNWTT--FTDVKCAYVPSATPSSITIVYDTFAFQIS 78 (159)
Q Consensus 3 ~~~~~~~~~~~~~~s~s~~~L~G~v~V~NlafeK~V~VRyT~--D~W~T--~~dv~A~yv~~~~~~~~~~~~D~F~F~i~ 78 (159)
.|||+.+ ...++..|.|+|+|+||||||+|+||||+ |+|+| ++ ++|.|+++..+ .++|+|+|+++
T Consensus 27 ~~V~Les------~~~~~~~LsGtI~V~NlAyeK~V~VrYs~~~d~W~s~~~~-~~A~y~s~~~~----~~~e~~~F~~~ 95 (109)
T 4eib_A 27 ASVQLDS------YNYDGSTFSGKIYVKNIAYSKKVTVVYADGSDNWNNNGNI-IAASFSGPISG----SNYEYWTFSAS 95 (109)
T ss_dssp CSEEEEE------EEECSSEEEEEEEEECCSSCEEEEEEEECTTSCCTTTTCE-EECEEEEECTT----SSEEEEEEEEE
T ss_pred ceEEEEE------EEEeCCEEEEEEEEEecccceEEEEEEeecCCCcccCCcE-eeEEEecCCCC----CCeEEEEEEEE
Confidence 5788877 77788999999999999999999999999 99999 98 99999987643 37999999999
Q ss_pred cCCCCCeEEEEEEEEcC
Q psy7210 79 IPKSAHQIEFCIAYKTE 95 (159)
Q Consensus 79 lp~~~~~leFcIrY~v~ 95 (159)
+|. .+||||||+|+
T Consensus 96 apG---a~qFaIrY~V~ 109 (109)
T 4eib_A 96 VKG---IKEFYIKYEVS 109 (109)
T ss_dssp CSC---CCEEEEEEEEC
T ss_pred CCC---CEEEEEEEEeC
Confidence 982 59999999985
No 4
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=98.24 E-value=1.3e-06 Score=63.97 Aligned_cols=65 Identities=28% Similarity=0.502 Sum_probs=47.9
Q ss_pred ceEEEEEEecC--CCceeeEEEEEEeCCCCCCCCCceeEEE-EEEEEcCCCCCeEEEEEEEEcCCeeeeecCCCccEEEE
Q psy7210 35 KKEVIIRYSTN--NWTTFTDVKCAYVPSATPSSITIVYDTF-AFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIK 111 (159)
Q Consensus 35 eK~V~VRyT~D--~W~T~~dv~A~yv~~~~~~~~~~~~D~F-~F~i~lp~~~~~leFcIrY~v~g~eyWDNN~G~NY~v~ 111 (159)
-++|.|||..+ +|.+...++..-.. ++.| +.+|+||. ...||||++ +|..-||||+|+||.+.
T Consensus 15 ~~~vylHyg~~~g~Wt~~~~v~M~~~~----------~~gw~~~TI~l~~-g~~~~~~F~---dG~~~WDNn~g~Nyt~~ 80 (104)
T 2laa_A 15 FNSPYIHYRPAGGSWTAAPGVKMQDAE----------ISGYAKITVDIGS-ASQLEAAFN---DGNNNWDSNNTKNYSFS 80 (104)
T ss_dssp SSSCEEEEEETTSCCCSSSCEECEEET----------TTTEEEEEEECTT-CSCEEEEEE---CSSSCEESTTTSCEEEC
T ss_pred CCcEEEEEcCCCCCCCcCCcccccccc----------CCCeEEEEEECCC-CCEEEEEEe---CCCCcCcCCCCccEEec
Confidence 46777777763 67776655543221 2356 58999985 688999994 88999999999999997
Q ss_pred ee
Q psy7210 112 KG 113 (159)
Q Consensus 112 ~~ 113 (159)
..
T Consensus 81 ~g 82 (104)
T 2laa_A 81 TG 82 (104)
T ss_dssp SE
T ss_pred CC
Confidence 54
No 5
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=98.23 E-value=1.5e-06 Score=63.57 Aligned_cols=66 Identities=24% Similarity=0.370 Sum_probs=48.8
Q ss_pred ceEEEEEEecCC--CceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCeeeeecCCCccEEEEe
Q psy7210 35 KKEVIIRYSTNN--WTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIKK 112 (159)
Q Consensus 35 eK~V~VRyT~D~--W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~eyWDNN~G~NY~v~~ 112 (159)
-+.|.|||.+++ |.+..+++..-.. . ...|+.+|+++. ..+||||+ .+|..-||||+|+||.+..
T Consensus 20 ~~~~ylHy~~~~g~Wt~vpgv~M~~~~--~-------~Gw~~~TI~~~~-~~~l~~~F---~dG~~~WDNN~g~Ny~~~~ 86 (102)
T 2c3v_A 20 WTHPHIHYSLNQGAWTTLPGVPLTKSE--X-------EGXVKVTIEAEE-GSQLRAAF---NNGSGQWDNNQGRDYDFSS 86 (102)
T ss_dssp CSSCEEEEEETTCCBCCTTCEECEECS--S-------TTEEEEEECCCT-TCEEEEEE---ECSSSCEECGGGTCEEEES
T ss_pred CCcEEEEEeCCCCCcccCCCcCccccc--c-------CCceEEEEecCC-CceEEEEE---eCCCcccccCCCcceEECC
Confidence 477888888854 7777666654321 1 124678998874 68999999 6788899999999999864
Q ss_pred e
Q psy7210 113 G 113 (159)
Q Consensus 113 ~ 113 (159)
.
T Consensus 87 g 87 (102)
T 2c3v_A 87 G 87 (102)
T ss_dssp E
T ss_pred C
Confidence 3
No 6
>4eib_A Glucoamylase; beta barrel, starch binding, amylose, hydrolase; 1.86A {Rhizopus oryzae}
Probab=96.99 E-value=0.0001 Score=54.46 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=18.4
Q ss_pred CeeeeecCCCccEEEEeeecCC
Q psy7210 96 NEEFWDNNNSKNYIIKKGIAPP 117 (159)
Q Consensus 96 g~eyWDNN~G~NY~v~~~~~~p 117 (159)
||+|||||+|+||++-.. ..|
T Consensus 2 g~ty~d~n~~~~~~~~~~-~~~ 22 (109)
T 4eib_A 2 GKTYYDNNNSANYQVSTH-MAS 22 (109)
T ss_dssp CCCCCCCTTTTCCCCCCC-CCC
T ss_pred CceeecCCCCcceEeccc-ccc
Confidence 899999999999999876 555
No 7
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=62.51 E-value=15 Score=30.03 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=34.2
Q ss_pred cceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCe
Q psy7210 34 FKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 97 (159)
Q Consensus 34 feK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~ 97 (159)
-.++|.|-=+||+|+. .++.....+ -..|+..+.||++ ++-.+|.|+|+
T Consensus 180 ~~~~V~v~GsF~~W~~--~~~l~k~~~---------~g~~~~~~~L~~G----~y~YkFiVDG~ 228 (294)
T 3nme_A 180 GFSRVEISGLDIGWGQ--RIPLTLGKG---------TGFWILKRELPEG----QFEYKYIIDGE 228 (294)
T ss_dssp SCSCEEEEETTTEEEE--EEECEECTT---------TCEEEEEEEECSE----EEEEEEEETTE
T ss_pred CCCEEEEEEeccCCCC--cccceEcCC---------CCEEEEEEECCCc----eEEEEEEECCE
Confidence 4588999999999984 355555432 1378889999863 35567788875
No 8
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=43.70 E-value=37 Score=27.52 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=32.9
Q ss_pred ceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCe
Q psy7210 35 KKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 97 (159)
Q Consensus 35 eK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~ 97 (159)
.++|.|.=+|++|+.. ++....... -..|+..+.||++ .+-.+|.|+|+
T Consensus 14 a~~V~V~GsF~~W~~~--~~m~k~~~~--------~G~f~~tv~LppG----~y~YKFiVDG~ 62 (252)
T 2qlv_B 14 GSKVYVTGSFTKWRKM--IGLIPDSDN--------NGSFHVKLRLLPG----THRFRFIVDNE 62 (252)
T ss_dssp CSCEEEEEGGGTTSSC--EECEECSSS--------TTCEEEEEEECSE----EEEEEEEETTE
T ss_pred CcEEEEEEEeCCCcCc--ccceeccCC--------CCcEEEEEECCCC----EEEEEEEECCE
Confidence 4889999999999864 344332211 1268889999863 35567778875
No 9
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=31.38 E-value=1e+02 Score=20.83 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=29.7
Q ss_pred cceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCe
Q psy7210 34 FKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 97 (159)
Q Consensus 34 feK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~ 97 (159)
-.|+|.|-=+|++|. - ++.... . ..|+..|+|+++ ++.-+|.++|+
T Consensus 20 ~a~~V~v~GdFn~W~-~--~~m~~~---~--------g~w~~~v~l~~G----~~~YKf~VdG~ 65 (96)
T 1z0n_A 20 GGKEVYLSGSFNNWS-K--LPMTRS---Q--------NNFVAILDLPEG----EHQYKFFVDGQ 65 (96)
T ss_dssp CCSCEEEEEGGGTTC-C--EECEEE---T--------TEEEEEEEECSE----EEEEEEEETTE
T ss_pred CCcEEEEEEEeCCCc-c--ccCEEC---C--------CEEEEEEEccCC----CEEEEEEECCe
Confidence 369999999999999 2 333322 1 267777788753 24456666663
No 10
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=25.38 E-value=66 Score=29.08 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=34.9
Q ss_pred cceEEEEEEecCCCceeeEEEEEEeCCCCCCCCCceeEEEEEEEEcCCCCCeEEEEEEEEcCCeeee
Q psy7210 34 FKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFW 100 (159)
Q Consensus 34 feK~V~VRyT~D~W~T~~dv~A~yv~~~~~~~~~~~~D~F~F~i~lp~~~~~leFcIrY~v~g~eyW 100 (159)
-.|+|.|.=+|++|.... .+.... -..|++.+.||++ ++--+|-|+| ++|
T Consensus 29 ~~~~v~~~G~Fn~w~~~~-~~~~~~-----------~~~~~~~~~L~~g----~~~y~f~vdg-~~~ 78 (696)
T 4aee_A 29 YAKNIYLIGEFTSLYPGF-VKLRKI-----------EEQGIVYLKLWPG----EYGYGFQIDN-DFE 78 (696)
T ss_dssp TCSCEEEEETTSCSSTTS-CBCEEE-----------TTEEEEEEEECSE----EEEEEEEETT-CCS
T ss_pred CCcEEEEEEecCCCCCCC-cceEec-----------CCeEEEEEEcCCc----eEEEEEEECC-EEe
Confidence 468899999999995431 222222 1489999999864 5667888888 477
No 11
>4b9f_A Cellulosomal-scaffolding protein A; sugar binding protein, cellulosome; 1.19A {Clostridium thermocellum atcc 27405} PDB: 1nbc_A
Probab=21.02 E-value=1.1e+02 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=20.1
Q ss_pred CCCCCeEeEEEEEeCcCcc----eEEEEEEec
Q psy7210 17 SRSVLMFPGTVKVRNLSFK----KEVIIRYST 44 (159)
Q Consensus 17 s~s~~~L~G~v~V~Nlafe----K~V~VRyT~ 44 (159)
+.+...|.-.++|.|-.=. +.|.|||=|
T Consensus 12 ~~~~n~i~p~~~i~N~g~~~i~LsdlkiRYyf 43 (152)
T 4b9f_A 12 SDTTNSINPQFKVTNTGSSAIDLSKLTLRYYY 43 (152)
T ss_dssp CSEESCBCEEEEEEECSSSCEEGGGEEEEEEE
T ss_pred CCCCCEEeeEEEEEECCCCccccccEEEEEEE
Confidence 3445667888889886544 569999766
No 12
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=20.13 E-value=30 Score=20.24 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=12.0
Q ss_pred eeecCCC---ccEEEEeeec
Q psy7210 99 FWDNNNS---KNYIIKKGIA 115 (159)
Q Consensus 99 yWDNN~G---~NY~v~~~~~ 115 (159)
=||.+++ .+|.+.+.|.
T Consensus 12 ~WD~~n~~s~~~yT~iF~k~ 31 (35)
T 2nud_C 12 DWDENNPSSADGYTHIFNKV 31 (35)
T ss_dssp GGGTTCTTCCCSSCEEEECC
T ss_pred cccCCCCCCCCCEeehhhhh
Confidence 3896653 5899988753
Done!