RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7210
(159 letters)
>gnl|CDD|217518 pfam03370, CBM_21, Putative phosphatase regulatory subunit. This
family consists of several eukaryotic proteins that are
thought to be involved in the regulation of glycogen
metabolism. For instance, the mouse PTG protein has been
shown to interact with glycogen synthase, phosphorylase
kinase, phosphorylase a: these three enzymes have key
roles in the regulation of glycogen metabolism. PTG also
binds the catalytic subunit of protein phosphatase 1
(PP1C) and localises it to glycogen. Subsets of similar
interactions have been observed with several other
members of this family, such as the yeast PIG1, PIG2,
GAC1 and GIP2 proteins. While the precise function of
these proteins is not known, they may serve a scaffold
function, bringing together the key enzymes in glycogen
metabolism. This family is a carbohydrate binding
domain.
Length = 108
Score = 116 bits (293), Expect = 1e-34
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
Query: 25 GTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPK--- 81
GTV+V+NL+F+K V +RY+ +NW TF+DV YVPS S YD F+F I +P
Sbjct: 23 GTVRVKNLAFEKSVTVRYTLDNWKTFSDVPAEYVPSYDGSDN---YDRFSFSIPLPPLLN 79
Query: 82 SAHQIEFCIAYKTENEEFWDNNNSKNYII 110
++EFCI Y+ +E+WDNNN KNY +
Sbjct: 80 EGKRLEFCIRYEVNGQEYWDNNNGKNYQV 108
>gnl|CDD|190631 pfam03423, CBM_25, Carbohydrate binding domain (family 25).
Length = 87
Score = 37.3 bits (87), Expect = 3e-04
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 30 RNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATP--SSITIVYDTFAFQISIPKSAHQIE 87
L+ + EV R N WT P T S + + + +P A+ ++
Sbjct: 13 TPLNGRPEVHYRGGFNRWTH--------APGFTMRLSESELKGGWWKATVDVPGEAYVLD 64
Query: 88 FCIAYKTENEEFWDNNNSKNY 108
F +DNNN +Y
Sbjct: 65 FVFN---NGGGVYDNNNGNDY 82
>gnl|CDD|198134 smart01066, CBM_25, Carbohydrate binding domain.
Length = 83
Score = 29.6 bits (67), Expect = 0.23
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 38 VIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 97
+ + NNWT DV+ + V T K A+++ FC N
Sbjct: 22 LHYGFGENNWTDVPDVR------MEKTGEGWVKATIP-----VKEAYKLNFCFKDGAGN- 69
Query: 98 EFWDNNNSKNY 108
WDNN NY
Sbjct: 70 --WDNNGGANY 78
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix
metalloproteinases (MMPs), serralysins, and the
astacin_like family of proteases.
Length = 165
Score = 28.6 bits (64), Expect = 1.00
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 40 IRYSTNNWTTFTDVKCAYVPSAT-PSSITIVYDTFAF 75
IRYS W + D +Y PS P + I+
Sbjct: 46 IRYSVIRWIPYNDGTWSYGPSQVDPLTGEILLARVYL 82
>gnl|CDD|238014 cd00057, FA58C, Coagulation factor 5/8 C-terminal domain, discoidin
domain; Cell surface-attached carbohydrate-binding
domain, present in eukaryotes and assumed to have
horizontally transferred to eubacterial genomes.
Length = 143
Score = 28.1 bits (63), Expect = 1.4
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 36 KEVIIRYSTN--NWTTFTDVKCAYVPSATPSSITIVYDTF 73
++YS + WTT+ D V + T V + F
Sbjct: 76 TSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDF 115
>gnl|CDD|225524 COG2977, EntD, Phosphopantetheinyl transferase component of
siderophore synthetase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 228
Score = 28.1 bits (63), Expect = 1.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 129 SKRYPDINHAKIDSWTEFASWTHL 152
KR+ A+I S T+ L
Sbjct: 172 VKRWLGFEDAQISSDTDRQGSFGL 195
>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic
Malate dehydrogenases. MDH is one of the key enzymes in
the citric acid cycle, facilitating both the conversion
of malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate.
Members of this subfamily are eukaryotic MDHs localized
to the cytoplasm and cytosol. MDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 325
Score = 28.4 bits (64), Expect = 1.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 128 SSKRYPDINHAKIDS 142
SS +YPD+NHA ++
Sbjct: 186 SSTQYPDVNHATVEL 200
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 28.5 bits (64), Expect = 1.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 16 PSRSVLMFP-GTVKVRNLSFKKEVIIRYS 43
PS ++L+FP GTV V L+F+ + S
Sbjct: 774 PSTALLLFPNGTV-VHLLAFESHRVATIS 801
>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase.
Length = 309
Score = 27.4 bits (61), Expect = 3.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 128 SSKRYPDINHAKIDSWTEFASWTHLANDGPY 158
SS +YPD+NHA + + + L D +
Sbjct: 166 SSTQYPDVNHATVKTPSGEKPVRELVADDAW 196
>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional.
Length = 326
Score = 26.7 bits (60), Expect = 6.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 128 SSKRYPDINHAKID 141
S+ +YPD HA ID
Sbjct: 188 SATQYPDFRHATID 201
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 26.1 bits (58), Expect = 7.2
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 82 SAHQIEFC--------IAYKTENEEFWDNNNSKNYIIKKGIAPPRN 119
S H +E + E+ DN +Y +K G++P RN
Sbjct: 144 STHDLELADLLDLDSAVRNYHFREDIDDNKLIFDYKLKPGVSPTRN 189
>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent. This
model represents the NAD-dependent cytosolic malate
dehydrogenase from eukaryotes. The enzyme from pig has
been studied by X-ray crystallography.
Length = 324
Score = 26.3 bits (58), Expect = 7.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 128 SSKRYPDINHAKIDSWTEFASWTHLANDGPY 158
SS +YPD+NHA + + D Y
Sbjct: 183 SSTQYPDVNHATVTKGGKQKPVREAIKDDAY 213
>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase. This model
represents a family of malate dehydrogenases in bacteria
and eukaryotes which utilize either NAD or NADP
depending on the species and context. MDH interconverts
malate and oxaloacetate and is a part of the citric acid
cycle as well as the C4 cycle in certain photosynthetic
organisms.
Length = 323
Score = 26.1 bits (58), Expect = 9.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 128 SSKRYPDINHAKID 141
S+ + PD HA +D
Sbjct: 187 SNTQVPDFTHATVD 200
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.419
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,901,253
Number of extensions: 675615
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 21
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)