RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7210
(159 letters)
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21
domain, carbohydrate binding domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 156
Score = 113 bits (285), Expect = 4e-33
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 25 GTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAH 84
GTVKV+NL+F+K V IR + + W ++TD C YV S DTF+F IS+P+
Sbjct: 50 GTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYAGS---DRDTFSFDISLPEKIQ 106
Query: 85 ---QIEFCIAYKTENEEFWDNNNSKNYIIK-------KGIAPPRNSP 121
++EF + Y+ + +WD+N KNY I +G+ P + P
Sbjct: 107 SYERMEFAVYYECNGQTYWDSNRGKNYRIIRAELKSTQGMTKPHSGP 153
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding,
carbohydrate binding, sugar binding protein; NMR
{Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Length = 106
Score = 107 bits (268), Expect = 3e-31
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 25 GTVKVRNLSFKKEVIIRYS--TNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKS 82
G + V+N+++ K+V + Y+ ++NW ++ A S Y+ + F S+
Sbjct: 23 GKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASFSGPISGS---NYEYWTFSASVK-- 77
Query: 83 AHQIEFCIAYKTENEEFWDNNNSKNYIIK 111
EF I Y+ + ++DNNNS NY +
Sbjct: 78 -GIKEFYIKYEVSGKTYYDNNNSANYQVS 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.014
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 16/66 (24%)
Query: 65 SITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIKKGIAPPRNSPILD 124
+T+ + + + +P ++ E+F K + P D
Sbjct: 8 PLTLSHGSLEHVLLVPTASF-----FIASQLQEQF-----------NKILPEPTEGFAAD 51
Query: 125 DTISSK 130
D ++
Sbjct: 52 DEPTTP 57
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus
polymyxa} PDB: 2lab_A
Length = 104
Score = 32.0 bits (72), Expect = 0.022
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 75 FQISIPK-SAHQIEFCIAYKTENEEFWDNNNSKNYIIKKGI 114
+I++ SA Q+E + WD+NN+KNY G
Sbjct: 46 AKITVDIGSASQLEAAF---NDGNNNWDSNNTKNYSFSTGT 83
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding,
carbohydrate binding, glycoside hydrolase, amylose,
amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB:
2c3v_B* 2c3w_A* 2c3x_A*
Length = 102
Score = 29.1 bits (64), Expect = 0.25
Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 15/81 (18%)
Query: 36 KEVIIRYSTNN--WTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYK 93
I YS N WTT V +TI + Q+
Sbjct: 21 THPHIHYSLNQGAWTTLPGVPLTKSEXEGXVKVTIEA----------EEGSQLRAAF--- 67
Query: 94 TENEEFWDNNNSKNYIIKKGI 114
WDNN ++Y G+
Sbjct: 68 NNGSGQWDNNQGRDYDFSSGV 88
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 30.2 bits (68), Expect = 0.29
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 34 FKKEVIIRYSTNNWTTFTDV 53
FK+E I+YS + D
Sbjct: 162 FKQECKIKYSERVYDACMDA 181
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 29.9 bits (68), Expect = 0.30
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 34 FKKEVIIRYSTNNWTTFTDV 53
F E RY+ W TFTD
Sbjct: 135 FYDECKRRYNIKLWKTFTDC 154
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 29.9 bits (68), Expect = 0.33
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 34 FKKEVIIRYSTNNWTTFTDV 53
F E RY+ W TFTD
Sbjct: 136 FYDECKRRYNIKLWKTFTDC 155
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 29.9 bits (68), Expect = 0.33
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 34 FKKEVIIRYSTNNWTTFTDV 53
F+ E +YS + F
Sbjct: 144 FEDECKYKYSQRIFNMFAQS 163
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 29.5 bits (67), Expect = 0.40
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 34 FKKEVIIRYSTNNWTTFTDV 53
F+ EV +Y+ + F++V
Sbjct: 140 FEGEVKAKYTAQMYELFSEV 159
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 29.5 bits (67), Expect = 0.46
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 34 FKKEVIIRYSTNNWTTFTDV 53
FK+E I+YS + D
Sbjct: 149 FKQECKIKYSERVYDACMDA 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 29.3 bits (66), Expect = 0.60
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 34 FKKEVIIRYSTNNWTTFTDV 53
F+ EV +Y+ + F++V
Sbjct: 293 FEGEVKAKYTAQMYELFSEV 312
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 1.4
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 70 YDTFAFQI-----SIPKSAHQIEFCIAYKTENEE--FWDNNNSKNYIIK 111
++ A ++ ++ N++ FWD SK Y ++
Sbjct: 171 FENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWD-AISKLYYVQ 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 4.0
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 18/75 (24%)
Query: 90 IAY---KTENEE--------FWDNNNSKNYIIKKGIAPPRNSPILDDTISSKRYPD---- 134
I + E+ E F D + I A + IL+ K Y
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 135 ---INHAKIDSWTEF 146
+++ +F
Sbjct: 537 NDPKYERLVNAILDF 551
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein
crystallography, group specificity, saccharide free
form; HET: NAG; 2.30A {Psophocarpus tetragonolobus}
SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A*
2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A*
2e7t_A* 2e7q_A*
Length = 242
Score = 25.9 bits (56), Expect = 7.1
Identities = 14/80 (17%), Positives = 25/80 (31%)
Query: 72 TFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIKKGIAPPRNSPILDDTISSKR 131
F+F I P + + + I ++P + DT +
Sbjct: 72 RFSFSIRQPFPRPHPADGLVFFIAPPNTQTGEGGGYFGIYNPLSPYPFVAVEFDTFRNTW 131
Query: 132 YPDINHAKIDSWTEFASWTH 151
P I H ID + ++ T
Sbjct: 132 DPQIPHIGIDVNSVISTKTV 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.419
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,419,494
Number of extensions: 124037
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 22
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)